NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F083919

Metagenome Family F083919

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083919
Family Type Metagenome
Number of Sequences 112
Average Sequence Length 37 residues
Representative Sequence MGYEPPLEDDIALDKDIEEEDDGYQEPDRMWGDE
Number of Associated Samples 70
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Viruses
% of genes with valid RBS motifs 77.14 %
% of genes near scaffold ends (potentially truncated) 16.07 %
% of genes from short scaffolds (< 2000 bps) 70.54 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Duplodnaviria (45.536 % of family members)
NCBI Taxonomy ID 2731341
Taxonomy All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(22.321 % of family members)
Environment Ontology (ENVO) Unclassified
(45.536 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(64.286 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.
1Draft_101128832
2Draft_101700882
3JGI12421J11937_100071645
4JGI12421J11937_100972333
5JGI12421J11937_101004183
6FwDRAFT_101226691
7JGI24766J26685_100172357
8B570J29032_1099440497
9JGI25920J50251_100667761
10Ga0070374_101098066
11Ga0070374_103123071
12Ga0068876_100364477
13Ga0068876_101022714
14Ga0068876_103188773
15Ga0068876_103580754
16Ga0068876_105913011
17Ga0068872_101356064
18Ga0049081_100922223
19Ga0049081_101410143
20Ga0049081_101903782
21Ga0049081_102049752
22Ga0049082_101577901
23Ga0078894_100043957
24Ga0078894_105330382
25Ga0078894_105526212
26Ga0079957_100056718
27Ga0079957_10177534
28Ga0075470_101509071
29Ga0070749_105260502
30Ga0075464_100723893
31Ga0075464_101152395
32Ga0075464_103496455
33Ga0075459_10069084
34Ga0075459_10829832
35Ga0102863_11679671
36Ga0105747_12507852
37Ga0108970_101288642
38Ga0108970_117625542
39Ga0114340_10074807
40Ga0114340_10142266
41Ga0114340_10220326
42Ga0114340_10223285
43Ga0114340_11355583
44Ga0114340_11369114
45Ga0114343_10086493
46Ga0114343_10257701
47Ga0114343_10785092
48Ga0114346_10633297
49Ga0114346_13015121
50Ga0114347_12653761
51Ga0114350_10060059
52Ga0114350_10224388
53Ga0114355_100778713
54Ga0114355_10145176
55Ga0114841_11201861
56Ga0114876_10097426
57Ga0114962_101519003
58Ga0105102_100881424
59Ga0114983_11367572
60Ga0114982_12024312
61Ga0157210_10146514
62Ga0164293_1003777810
63Ga0164293_104110943
64Ga0164293_108850903
65Ga0164294_105075191
66Ga0181362_10760773
67Ga0181349_11314344
68Ga0181348_11879751
69Ga0181355_13287181
70Ga0181359_10351154
71Ga0181359_10481883
72Ga0211729_112936532
73Ga0211731_104034052
74Ga0222713_102250822
75Ga0181354_10216418
76Ga0181354_11584621
77Ga0208916_101857493
78Ga0208966_11159501
79Ga0209135_11356451
80Ga0209356_10707094
81Ga0209499_10011437
82Ga0209770_103266661
83Ga0209107_100858504
84Ga0209107_101082914
85Ga0209107_104228773
86Ga0209229_102704661
87Ga0209229_104673401
88Ga0209990_101946743
89Ga0209550_106713061
90Ga0247723_10057456
91Ga0247723_10504192
92Ga0315291_102888724
93Ga0315907_100982301
94Ga0315907_101431525
95Ga0315907_104766592
96Ga0315900_105674712
97Ga0315900_108730993
98Ga0315909_100818949
99Ga0315909_105138323
100Ga0315909_109607182
101Ga0315904_108672431
102Ga0315904_110390412
103Ga0315274_100835776
104Ga0315906_105539063
105Ga0315902_106710393
106Ga0335003_0304059_10_120
107Ga0334985_0032508_1352_1477
108Ga0334995_0117123_1812_1952
109Ga0335022_0491088_449_556
110Ga0335056_0337311_3_122
111Ga0335052_0618339_132_257
112Ga0335007_0219849_972_1079
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
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51015202530MGYEPPLEDDIALDKDIEEEDDGYQEPDRMWGDESequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
83.9%16.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater And Sediment
Freshwater And Sediment
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater Lake
Freshwater
Lake
Sediment
Freshwater
Freshwater And Marine
Freshwater
Aqueous
Estuary Water
Estuarine
Estuarine Water
Deep Subsurface
Deep Subsurface Sediment
Estuary
Hydrocarbon Resource Environments
22.3%5.4%5.4%9.8%15.2%10.7%7.1%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Draft_1011288323300000558Hydrocarbon Resource EnvironmentsMGYEPPLEDDIALDKDIEEEDDGYQEPDRMWGDE*
Draft_1017008823300000558Hydrocarbon Resource EnvironmentsMGYEPPLEDDITLDKEIEVEDDGYQEPDRMWGDE*
JGI12421J11937_1000716453300000756Freshwater And SedimentMSYEPPLDDDIALGKDEEEDEGYQEPDEMWEDHFND*
JGI12421J11937_1009723333300000756Freshwater And SedimentMSYEPRLDDDIALGIELEEEEEDDFDGPDRMWGDEDE*
JGI12421J11937_1010041833300000756Freshwater And SedimentMSYEPRLEDDIALGLDEEEVDDGYQEPDRMWGDE*
FwDRAFT_1012266913300000882Freshwater And MarineMSYEPPLEDDVALDKDTEEEDDGYQEPDRMWGDE*
JGI24766J26685_1001723573300002161Freshwater And SedimentMMTQSTYYEGETMSYEPPLEDDIALGKDEEEDGYEEPDRMWDDD*
B570J29032_10994404973300002408FreshwaterMGYEPPLEDDIALDKDIEDEDEGYQEPDRMWGDE*
JGI25920J50251_1006677613300003404Freshwater LakeSLGHMTEPRLEDDIALGLDEEDDEGYQEPDQMWEDHFND*
Ga0070374_1010980663300005517Freshwater LakeGHMTEPRLEDDIALGLDEEDDEGYQEPDQMWEDHFND*
Ga0070374_1031230713300005517Freshwater LakeMTEPRLEDDIALGLDEEDDEGYQEPDQMWEDHFND*
Ga0068876_1003644773300005527Freshwater LakeMGYEPPLEDDIALDKDIEEEEDGYQEPDRMWGDE*
Ga0068876_1010227143300005527Freshwater LakeMGYEPPLEDDIALGKDIEEDDSDIYTEPDRMWGDE*
Ga0068876_1031887733300005527Freshwater LakeFMYYEGETMSYEPPLEDDIALGKDIEDDSDVYTEPDRMWDDE*
Ga0068876_1035807543300005527Freshwater LakeFMYYEGETMSYEPPLEDDIALGKDIEDDSDVYTEPDRMWGDE*
Ga0068876_1059130113300005527Freshwater LakeMGYEPPLEDDIALDKDIDEEEDGYQEPDRMWGDE*
Ga0068872_1013560643300005528Freshwater LakeMMTRFMYYEGETMSYEPPLEDDIALGKDIEDDSDVYTEPDRMWGDE*
Ga0049081_1009222233300005581Freshwater LenticMSYEPRLDDDIALDIELEEEDDGYQEPDRMWGDD*
Ga0049081_1014101433300005581Freshwater LenticMSYEPPLDDDIALDKNTEDDSDVYTEPDRMWDDE*
Ga0049081_1019037823300005581Freshwater LenticMPYEPRLEDDVALGLDEEEVDDGYQEPDRMWGDE*
Ga0049081_1020497523300005581Freshwater LenticMPYEPRLEDDIALGLDEEEELDDGYQEPDRMWGDE*
Ga0049082_1015779013300005584Freshwater LenticGKLVIMSYEPRLEDDIALGLDEEDDEGYQEPDEMWEDHLND*
Ga0078894_1000439573300005662Freshwater LakeMSYEPTLEDDVALDKDTEEEDDGYQEPDRMWGDE*
Ga0078894_1053303823300005662Freshwater LakeMGYEPPLEDDIALDKDIEDDSDVYTEPDRMWGDE*
Ga0078894_1055262123300005662Freshwater LakeMGYEPPLEDDIALDKNVEDDSDIYTEPDRMWGDE*
Ga0079957_1000567183300005805LakeMSYEPPLEDDIALGKDEEEDDDGYQEPDRMWGDD*
Ga0079957_101775343300005805LakeMSYEPPLDDDIALGKDEEEEEDEGYQEPDRMWGDD*
Ga0075470_1015090713300006030AqueousMSYEPPLEDDIALDKEIEDEDDGYQEPDRMWGDE*
Ga0070749_1052605023300006802AqueousMTYEPPLDDDVALDKDIEEEDDGYQEPDRMWGDE*
Ga0075464_1007238933300006805AqueousMGYEPRLEDDIALGLDEEEDEGYQEPDEMWEDHFND*
Ga0075464_1011523953300006805AqueousMSYEPPLEDDIALGKDEEEEDDGGYQEPDRMWGDD*
Ga0075464_1034964553300006805AqueousMPYEPRLEDDIALGLDEEENDDGYQEPDRMWGDE*
Ga0075459_100690843300006863AqueousMTYEPPLDDDVALDKNIEEEDDGYQEPDRMWGDE*
Ga0075459_108298323300006863AqueousMSYEPPLEDDVALDKDIEEEDDGYQEPDRMWGDE*
Ga0102863_116796713300007622EstuarineMGYEPRLEDDIALGLDEEEDEGYQEPDQMWEDHFND*
Ga0105747_125078523300007974Estuary WaterMSYEPRLEDDIALGLDEEDDEGYQEPDQMWEDHFND*
Ga0108970_1012886423300008055EstuaryMSYEPPLEDDVALDKDTEEKDDGYQEPDRMWGDE*
Ga0108970_1176255423300008055EstuaryMSYEPPLEDDIALDKDIEEQDDGYQEPDRMWGDE*
Ga0114340_100748073300008107Freshwater, PlanktonMSYEPRLDDDIALGIELEEEEDDTGEPDRMWGDD*
Ga0114340_101422663300008107Freshwater, PlanktonMGYEPPLEDDIALDKDIEDEDDGYQEPDRMWGDE*
Ga0114340_102203263300008107Freshwater, PlanktonMSYEPQLEDDFALGKYDDEEEDEDMGEPDRMWGDD*
Ga0114340_102232853300008107Freshwater, PlanktonMSYEPPLEDDVALDKDIEDEDDGYQEPDRMWGDE*
Ga0114340_113555833300008107Freshwater, PlanktonMSYEPPLEDDIALDKDIEDDSDVYTEPDRMWGDE*
Ga0114340_113691143300008107Freshwater, PlanktonMMTQYMYHEGETMSYEPPLEDDIALDKDIEDDSDVYTEPDRMWGDE*
Ga0114343_100864933300008110Freshwater, PlanktonMSYEPPLDDDIALGKDEEEEDEGYQEPDRMWGDD*
Ga0114343_102577013300008110Freshwater, PlanktonMYYKGGEMGYEPPLEDDIALDKDIEDEGYQEPDRMWGDE*
Ga0114343_107850923300008110Freshwater, PlanktonMTHYTYHEGDIMGYEPPLEDDIALDKDIEEDDSDVYTEPDRMWGDE*
Ga0114346_106332973300008113Freshwater, PlanktonMSYEPRLDDDIALDIELEEEDDDGYQEPDRMWGDD*
Ga0114346_130151213300008113Freshwater, PlanktonMYHEGETMSYEPPLEDDIALDKDIEDDSDVYTEPDRMWGDE*
Ga0114347_126537613300008114Freshwater, PlanktonMMTQYMYHEGETMSYDPPLEDAIALGKDIEEEDDSDIYTEPDRMWGDE*
Ga0114350_100600593300008116Freshwater, PlanktonMTEPRLEDDIALDIEEEEELDDTDPGDGPDRMWGDEN*
Ga0114350_102243883300008116Freshwater, PlanktonMGYEPPFEDDIALGKDIEEEDDSDIYTEPDRMWGDE*
Ga0114355_1007787133300008120Freshwater, PlanktonMGYEPPLEDDIALGKDIEEEDDSDIYTEPDRMWGDE*
Ga0114355_101451763300008120Freshwater, PlanktonMTEPRLEDDIALDIEEEELDDTDPGDGPDRMWGDEN*
Ga0114841_112018613300008259Freshwater, PlanktonMMTQYMYHEGETMSYEPPLEDDIALGKDIEEEDDSDIYTEPDRMWGDE*
Ga0114876_100974263300008448Freshwater LakeMSYEPPLDDDIALGKDEEEEDEGYHEPDRMWGDDD*
Ga0114962_1015190033300009151Freshwater LakeMSYEPPLDDDVALDIELEEEDDDGYQEPDRMWGDD*
Ga0105102_1008814243300009165Freshwater SedimentMGYEPPLEDDIALDKDIKDDSDVYTEPDRMWGDE*
Ga0114983_113675723300009194Deep SubsurfaceGYEPPLEDDIALGKDIEEDDSDIYTEPDRMWGDE*
Ga0114982_120243123300009419Deep SubsurfaceMSYEPRLEDDIALGLDEEEDEDDTGEPDRMWGDE*
Ga0157210_101465143300012665FreshwaterMSYEPPLDDDIALGKDEEENEDEGYQEPDRMWGDE*
Ga0164293_10037778103300013004FreshwaterMGYEPPLEDDIALDKDVEDDSDIYTEPDRMWGDE*
Ga0164293_1041109433300013004FreshwaterMYYKGGEMGYEPPLEDDIALGKDEEDDSDVYTEPDRMFGDE*
Ga0164293_1088509033300013004FreshwaterMRDPRLEDDIALGLDEEEEELDDGYQEPDRMWGDD*
Ga0164294_1050751913300013006FreshwaterMSEPRLEDDIALGLDEEDDEGYQEPDQMWEDHFND*
Ga0181362_107607733300017723Freshwater LakeMTEPRLEDDIALGLDEEEDEGYQEPDQMWEDHFND
Ga0181349_113143443300017778Freshwater LakeARKGRTMSYEPRLEDDVALGLDEEEVDDGYQEPDRMWGDE
Ga0181348_118797513300017784Freshwater LakeMSYEPRLDDDIALGIELEEEDDFDGPDRMWGDEDD
Ga0181355_132871813300017785Freshwater LakeSLGLMTEPRLEDDIALGLDEEDDEGYQEPDQMWEDHFND
Ga0181359_103511543300019784Freshwater LakeMSYEPPLDDDIALGKDEEEDEGYQEPDQMWEDHFND
Ga0181359_104818833300019784Freshwater LakeMSYEPRLEDDIALGLDEEDDEGYQEPDEMWEDHLND
Ga0211729_1129365323300020172FreshwaterQSRRGGRMSYEPPLEDDIALDKETEEDDGYQEPDRMWGDE
Ga0211731_1040340523300020205FreshwaterMSEPRLEDDIALGLDEEEEDEGYQEPDQMWEDHFND
Ga0222713_1022508223300021962Estuarine WaterMMTQSTYYEGETMSYEPPLEDDIALGKDIEEEDDSDVYTEPDRMWGDE
Ga0181354_102164183300022190Freshwater LakeRRKKMPYEPRLEDDIALGLDEEEDDGYQEPDRMWGDE
Ga0181354_115846213300022190Freshwater LakeMSYEPRLDDDIALGIELEDEDDFEGPDRMWGDEDD
Ga0208916_1018574933300025896AqueousMSYEPPLEDDIALGKDEEEEDDGGYQEPDRMWGDD
Ga0208966_111595013300027586Freshwater LenticGKLVIMSYEPRLEDDIALGLDEEDDEGYQEPDEMWEDHLND
Ga0209135_113564513300027642Freshwater LakeHMTEPRLEDDIALGLDEEDDEGYQEPDQMWEDHFND
Ga0209356_107070943300027644Freshwater LakeMSYEPPLDDDIALGKDEEEDEGYQEPDEMWEDHFND
Ga0209499_100114373300027712Freshwater LakeMSYEPPLDDDVALDIELEEEDDDGYQEPDRMWGDD
Ga0209770_1032666613300027769Freshwater LakeMWKEETMSYEPTLEDDVALDKDTEEEDDGYQEPDRMWGDE
Ga0209107_1008585043300027797Freshwater And SedimentMGYEPRLEDDIALGLDEEEDEGYQEPDQMWEDHFND
Ga0209107_1010829143300027797Freshwater And SedimentMSYEPRLDDDIALGIELEEEEDDFDGPDRMWGDEDE
Ga0209107_1042287733300027797Freshwater And SedimentKTMRDPRLEDDIALGLDEEEEEELDDGYQEPDRMWGDE
Ga0209229_1027046613300027805Freshwater And SedimentMLARRRRIMGYEPPLDDDVALDKDIEEEDDGYQEPDRMWGDE
Ga0209229_1046734013300027805Freshwater And SedimentMMTQSTYYEGETMSYEPPLEDDIALGKDEEEDGYEEPDRMWDDD
Ga0209990_1019467433300027816Freshwater LakeMMTRFMYYEGETMSYEPPLEDDIALGKDIEDDSDVYTEPDRMWDDE
Ga0209550_1067130613300027892Freshwater LakeGHMTEPRLEDDIALGLDEEDDEGYQEPDQMWEDHFND
Ga0247723_100574563300028025Deep Subsurface SedimentMGYEPPLDDDIALGKDEEEDEDEGYQEPDRMWGDE
Ga0247723_105041923300028025Deep Subsurface SedimentMGYEPPLEDDIALGKDIEENDSDIYTEPDRMWGDE
Ga0315291_1028887243300031707SedimentMSEPRLEDDIALGLDEEDDEGYQEPDQMWEDHFND
Ga0315907_1009823013300031758FreshwaterMTEPRLEDDIALDIEEEEELDDTDPGDGPDRMWGDEN
Ga0315907_1014315253300031758FreshwaterMGYEPPLEDDIALGKDIEEDDSDIYTEPDRMWGDE
Ga0315907_1047665923300031758FreshwaterMGYEPPFEDDIALGKDIEEEDDSDIYTEPDRMWGDE
Ga0315900_1056747123300031787FreshwaterMTEPRLEDDIALDIEEEELDDTDPGDGPDRMWGDEN
Ga0315900_1087309933300031787FreshwaterNKLMPYEPRLEDDIALGIDEEEEDDTGEPDRMWGDE
Ga0315909_1008189493300031857FreshwaterMYYKGGKMGYEPPLEDDIALNKDTEDEGYQEPDRMWGDE
Ga0315909_1051383233300031857FreshwaterMETKCMYYKGGEMGYEPPLEDDIALDKDIEDEGYQEPDRMWGDE
Ga0315909_1096071823300031857FreshwaterVCMETRCMYYKGGKMGYEPPLEDDIALDKDTEDEGYQEPDRMWGDE
Ga0315904_1086724313300031951FreshwaterMMTRFMYYEGETMSYEPPLEDDIALDKDIEDDSDVYTEPDRMWGDE
Ga0315904_1103904123300031951FreshwaterMSYEPPLEDDIALGKDIEEEDDSDIYTEPDRMWGDE
Ga0315274_1008357763300031999SedimentMKKRWKMPYEPRLEDDVALGLDEEEVDDGYQEPDRMWGDE
Ga0315906_1055390633300032050FreshwaterMETRCMYYKGGKMGYEPPLEDDIALNKDTEDEGYQEPDRMWGDE
Ga0315902_1067103933300032093FreshwaterMGYEPPLEDDIALGKDIEEEDDSDIYTEPDRMWGDE
Ga0335003_0304059_10_1203300033995FreshwaterMMSEPRLEDDIALGLDEEEEELDDGYQEPDRMWGDE
Ga0334985_0032508_1352_14773300034018FreshwaterMYYKGGKMGYEPPLEDDIALDKDIEDDSDVYTEPDRMWGDE
Ga0334995_0117123_1812_19523300034062FreshwaterMETKCMYYKGGKMGYEPPLEDDIALDKDIEDDSDVYTEPDRMWGDE
Ga0335022_0491088_449_5563300034095FreshwaterMSEPRLEDDIALGLDEEEEELDDGYQEPDRMWGDE
Ga0335056_0337311_3_1223300034120FreshwaterMYYKGGKMGYEPPLEDDIALDKDIEDDSDVYTEPDRMWGD
Ga0335052_0618339_132_2573300034279FreshwaterMYYKGGEMGYEPPLEDDIALDKDIEDDSNVYTEPDRMWGDE
Ga0335007_0219849_972_10793300034283FreshwaterMSYEPRLDDDIALDIELEEEEDDGYQEPDRMWGDD


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