NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F083737

Metagenome / Metatranscriptome Family F083737

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083737
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 41 residues
Representative Sequence MTKARDLANASTALSAVSATELGYVDGVTSAIQTQIDAKA
Number of Associated Samples 71
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Viruses
% of genes with valid RBS motifs 99.11 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 84.82 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Predicted Viral (33.929 % of family members)
NCBI Taxonomy ID 10239 (predicted)
Taxonomy All Organisms → Viruses → Predicted Viral

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(45.536 % of family members)
Environment Ontology (ENVO) Unclassified
(67.857 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(78.571 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.47%    β-sheet: 0.00%    Coil/Unstructured: 48.53%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF01476LysM 0.89
PF09723Zn-ribbon_8 0.89



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms68.75 %
UnclassifiedrootN/A31.25 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000756|JGI12421J11937_10013693All Organisms → Viruses → Predicted Viral3078Open in IMG/M
3300002408|B570J29032_109330293All Organisms → cellular organisms → Bacteria695Open in IMG/M
3300002835|B570J40625_100243919All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1882Open in IMG/M
3300003394|JGI25907J50239_1018292All Organisms → Viruses → Predicted Viral1579Open in IMG/M
3300003734|Ga0008279_1029293All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300005517|Ga0070374_10328060All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300005527|Ga0068876_10027487All Organisms → cellular organisms → Bacteria3555Open in IMG/M
3300005583|Ga0049085_10272140All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage553Open in IMG/M
3300005583|Ga0049085_10272209Not Available553Open in IMG/M
3300007516|Ga0105050_10781557All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes545Open in IMG/M
3300007708|Ga0102859_1124722All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403749Open in IMG/M
3300007722|Ga0105051_11066804All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes577Open in IMG/M
3300007960|Ga0099850_1313410All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage593Open in IMG/M
3300007973|Ga0105746_1278115Not Available579Open in IMG/M
3300008107|Ga0114340_1000902All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes20078Open in IMG/M
3300008107|Ga0114340_1016077All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6436Open in IMG/M
3300008107|Ga0114340_1016186All Organisms → Viruses → Predicted Viral3569Open in IMG/M
3300008107|Ga0114340_1266443Not Available512Open in IMG/M
3300008110|Ga0114343_1166233All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440683Open in IMG/M
3300008110|Ga0114343_1187050All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage616Open in IMG/M
3300008120|Ga0114355_1102267Not Available1123Open in IMG/M
3300008261|Ga0114336_1106958All Organisms → Viruses → Predicted Viral1305Open in IMG/M
3300008266|Ga0114363_1226596Not Available548Open in IMG/M
3300008339|Ga0114878_1139776All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage881Open in IMG/M
3300008448|Ga0114876_1014987All Organisms → Viruses → Predicted Viral4219Open in IMG/M
3300008448|Ga0114876_1028024All Organisms → Viruses → Predicted Viral2798Open in IMG/M
3300008448|Ga0114876_1052327All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C4401835Open in IMG/M
3300008448|Ga0114876_1167482All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage782Open in IMG/M
3300008448|Ga0114876_1174220All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage757Open in IMG/M
3300009163|Ga0114970_10665599Not Available555Open in IMG/M
3300009181|Ga0114969_10096385All Organisms → Viruses → Predicted Viral1910Open in IMG/M
3300010160|Ga0114967_10433698All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage651Open in IMG/M
(restricted) 3300013132|Ga0172372_10088456All Organisms → cellular organisms → Bacteria2682Open in IMG/M
3300013372|Ga0177922_10846378All Organisms → Viruses → Predicted Viral2383Open in IMG/M
3300013372|Ga0177922_10908895All Organisms → Viruses → Predicted Viral1231Open in IMG/M
3300017701|Ga0181364_1027650Not Available922Open in IMG/M
3300017722|Ga0181347_1017137All Organisms → Viruses → Predicted Viral2309Open in IMG/M
3300017723|Ga0181362_1028747All Organisms → Viruses → Predicted Viral1186Open in IMG/M
3300017723|Ga0181362_1051009Not Available860Open in IMG/M
3300017736|Ga0181365_1078794Not Available808Open in IMG/M
3300017736|Ga0181365_1089392All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440750Open in IMG/M
3300017736|Ga0181365_1097839Not Available712Open in IMG/M
3300017747|Ga0181352_1095720All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage818Open in IMG/M
3300017761|Ga0181356_1026402Not Available2102Open in IMG/M
3300017774|Ga0181358_1038696All Organisms → Viruses → Predicted Viral1840Open in IMG/M
3300017774|Ga0181358_1044734All Organisms → Viruses → Predicted Viral1690Open in IMG/M
3300017774|Ga0181358_1052171All Organisms → Viruses → Predicted Viral1545Open in IMG/M
3300017774|Ga0181358_1073940All Organisms → Viruses → Predicted Viral1254Open in IMG/M
3300017774|Ga0181358_1074777All Organisms → Viruses → Predicted Viral1245Open in IMG/M
3300017774|Ga0181358_1078178All Organisms → Viruses → Predicted Viral1212Open in IMG/M
3300017774|Ga0181358_1110627All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage975Open in IMG/M
3300017774|Ga0181358_1187360All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440684Open in IMG/M
3300017777|Ga0181357_1061471All Organisms → Viruses → Predicted Viral1454Open in IMG/M
3300017777|Ga0181357_1062150All Organisms → Viruses → Predicted Viral1445Open in IMG/M
3300017777|Ga0181357_1148683All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440864Open in IMG/M
3300017777|Ga0181357_1321512Not Available520Open in IMG/M
3300017778|Ga0181349_1158192Not Available809Open in IMG/M
3300017780|Ga0181346_1301694Not Available543Open in IMG/M
3300017784|Ga0181348_1056420All Organisms → Viruses → Predicted Viral1597Open in IMG/M
3300017784|Ga0181348_1068102All Organisms → Viruses → Predicted Viral1429Open in IMG/M
3300017784|Ga0181348_1159292Not Available839Open in IMG/M
3300017785|Ga0181355_1064658All Organisms → Viruses → Predicted Viral1541Open in IMG/M
3300017785|Ga0181355_1075354All Organisms → Viruses → Predicted Viral1414Open in IMG/M
3300017785|Ga0181355_1186698Not Available821Open in IMG/M
3300017785|Ga0181355_1209489Not Available762Open in IMG/M
3300019784|Ga0181359_1039609All Organisms → Viruses → Predicted Viral1825Open in IMG/M
3300019784|Ga0181359_1048835Not Available1633Open in IMG/M
3300019784|Ga0181359_1085377Not Available1177Open in IMG/M
3300019784|Ga0181359_1134206All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage869Open in IMG/M
3300019784|Ga0181359_1163127Not Available753Open in IMG/M
3300019784|Ga0181359_1196248Not Available654Open in IMG/M
3300019784|Ga0181359_1259521All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage522Open in IMG/M
3300020159|Ga0211734_10616395All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1227Open in IMG/M
3300022190|Ga0181354_1059825All Organisms → Viruses → Predicted Viral1267Open in IMG/M
3300022407|Ga0181351_1061597All Organisms → Viruses → Predicted Viral1541Open in IMG/M
3300022407|Ga0181351_1070860Not Available1411Open in IMG/M
3300023174|Ga0214921_10505015Not Available573Open in IMG/M
3300023184|Ga0214919_10314479Not Available1070Open in IMG/M
3300025647|Ga0208160_1077915Not Available892Open in IMG/M
3300027155|Ga0255081_1063842All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage739Open in IMG/M
3300027491|Ga0255097_1061486All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage678Open in IMG/M
3300027581|Ga0209651_1195847Not Available530Open in IMG/M
3300027679|Ga0209769_1065932All Organisms → Viruses → Predicted Viral1199Open in IMG/M
3300027732|Ga0209442_1252828Not Available629Open in IMG/M
3300027756|Ga0209444_10035837All Organisms → Viruses → Predicted Viral2337Open in IMG/M
3300027759|Ga0209296_1008677All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes6225Open in IMG/M
3300027785|Ga0209246_10042735All Organisms → Viruses → Predicted Viral1739Open in IMG/M
3300027798|Ga0209353_10466801Not Available507Open in IMG/M
3300027808|Ga0209354_10167029Not Available896Open in IMG/M
3300027816|Ga0209990_10125938All Organisms → Viruses → Predicted Viral1228Open in IMG/M
3300027963|Ga0209400_1026760All Organisms → Viruses → Predicted Viral3271Open in IMG/M
3300027983|Ga0209284_10350577All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage737Open in IMG/M
3300028025|Ga0247723_1132762Not Available598Open in IMG/M
3300028108|Ga0256305_1176059All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes507Open in IMG/M
3300029930|Ga0119944_1017564All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage999Open in IMG/M
3300031758|Ga0315907_10170985All Organisms → Viruses → Predicted Viral1833Open in IMG/M
3300031758|Ga0315907_10264772All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1422Open in IMG/M
3300031857|Ga0315909_10050315All Organisms → Viruses → Predicted Viral3864Open in IMG/M
3300031857|Ga0315909_10354812All Organisms → Viruses → Predicted Viral1070Open in IMG/M
3300031951|Ga0315904_10179259Not Available2106Open in IMG/M
3300031951|Ga0315904_10190221All Organisms → Viruses → Predicted Viral2027Open in IMG/M
3300031951|Ga0315904_10221528All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Siovirus → Siovirus germanense1838Open in IMG/M
3300031951|Ga0315904_10435566All Organisms → Viruses → Predicted Viral1177Open in IMG/M
3300032050|Ga0315906_10540752All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage975Open in IMG/M
3300032092|Ga0315905_11537348Not Available520Open in IMG/M
3300032116|Ga0315903_10275136All Organisms → Viruses → Predicted Viral1439Open in IMG/M
3300033981|Ga0334982_0272511Not Available806Open in IMG/M
3300034062|Ga0334995_0135530All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1801Open in IMG/M
3300034062|Ga0334995_0706602All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage567Open in IMG/M
3300034092|Ga0335010_0288983Not Available947Open in IMG/M
3300034118|Ga0335053_0234832All Organisms → Viruses → Predicted Viral1185Open in IMG/M
3300034279|Ga0335052_0096960Not Available1781Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake45.54%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater9.82%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater8.04%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton8.04%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake5.36%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.46%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.68%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater2.68%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater2.68%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic1.79%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.79%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.89%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.89%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment0.89%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic0.89%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.89%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.89%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.89%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment0.89%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000756Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011EnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300003734Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_RNA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005583Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRFEnvironmentalOpen in IMG/M
3300007516Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01EnvironmentalOpen in IMG/M
3300007708Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02EnvironmentalOpen in IMG/M
3300007722Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly)EnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008120Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NAEnvironmentalOpen in IMG/M
3300008261Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008339Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Sept 29, 2014 all contigsEnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300009163Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaGEnvironmentalOpen in IMG/M
3300009181Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaGEnvironmentalOpen in IMG/M
3300010160Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaGEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027155Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8hEnvironmentalOpen in IMG/M
3300027491Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8dEnvironmentalOpen in IMG/M
3300027581Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027679Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027732Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027756Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027816Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027983Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028108Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029930Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032092Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034092Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069EnvironmentalOpen in IMG/M
3300034118Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165EnvironmentalOpen in IMG/M
3300034279Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI12421J11937_1001369313300000756Freshwater And SedimentMTKARDLANASTALSAVSATELAFVDGVTSAIQTQ
B570J29032_10933029313300002408FreshwaterMSKARDIASAAPAPSTVSATELGYVDGVTSAIQTQLD
B570J40625_10024391913300002835FreshwaterMTKARDIASAAPAPSTVSATELGYLDGVTSAIQTQLDAKTAKSTL
JGI25907J50239_101829233300003394Freshwater LakeMTKARDLANAGTALGAVSATELAFVDGVTSAIQTQIDSKIGSASAIN
Ga0008279_102929323300003734MarineMTKARDLANYVSAGTVDSTELGYLDGVTSNIQDQLDNISVTS
Ga0070374_1032806013300005517Freshwater LakeMTKARDLANSAAAFAAVSATELAFVDGVTSAIQTQIDAKAPSSTAVTLTGTQTL
Ga0068876_1002748713300005527Freshwater LakeMTKARDIASATPAPSTVSATELGYLDGVSSAIQTQ
Ga0049085_1027214013300005583Freshwater LenticMTKARDLANSAAAFSAVSATELGYVDGVTSAIQTQLDA
Ga0049085_1027220913300005583Freshwater LenticMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKAPSSTAVTLT
Ga0105050_1078155713300007516FreshwaterMTKARDIASAIPAPATVSSVELGYLDGVTSAIQTQVDS
Ga0102859_112472223300007708EstuarineMSKARDLANAGTALTTVSATELGFLDGVTSAVQTQVDAK
Ga0105051_1106680413300007722FreshwaterMTKARDIASAIPAPATVSSVELGYLDGVTSAIQTQVDSKIGSA
Ga0099850_131341033300007960AqueousMSKARDLANAGTALTTVDATELGYLDGVTSAVQTQIDTKAPSS
Ga0105746_127811513300007973Estuary WaterLTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKASL
Ga0114340_1000902213300008107Freshwater, PlanktonMSKARDLANAASALSAVSATELGYIDGVTSAIQTQINTVNTSV
Ga0114340_101607713300008107Freshwater, PlanktonMSKARDLANAGTALGAVTATELGYVDGVTSAIQTQIDSKIGSA
Ga0114340_101618643300008107Freshwater, PlanktonMTKARDLANAASALSAVSATELGYIDGVTSAIQTQINTVNTSV
Ga0114340_126644313300008107Freshwater, PlanktonMSKARDLANAGTALTSVSATELGYLDGVTSAVQTQIN
Ga0114343_116623313300008110Freshwater, PlanktonMSKARDLANAGTALTTVSATELGYLDGVTSAVQTQINAQIPK
Ga0114343_118705033300008110Freshwater, PlanktonMSKARDLANAGTALTTVSATELGYLDGVTSAVQTQINSK
Ga0114355_110226743300008120Freshwater, PlanktonMTKARDIASAAPAPSTVSATELGYLDGVSSAIQTQIDSKIGSASAIN
Ga0114336_110695813300008261Freshwater, PlanktonMSKARDLANAGTALTTVSATELGYLDGVTSAVQTQIDSKIGSASAI
Ga0114363_122659623300008266Freshwater, PlanktonMTKARDLASAAPAPSTVSATELGYLDGVTSNIQTQIDSKTGGIATDTPP
Ga0114878_113977633300008339Freshwater LakeMSKARDIASAAPAPSTVSATELGYVDGVTSAIQTQL
Ga0114876_101498763300008448Freshwater LakeMTKARDIASATPAPSTVSATELGYLDGVSSAIQTQIDSKIGSASAIN
Ga0114876_102802473300008448Freshwater LakeMSKARDIASATPAPSTVSATELGYLDGVSSAIQTQIDSKIGSASAIN
Ga0114876_105232753300008448Freshwater LakeMSKARDLASATPAPSTVSATELGYLDGVTSAVQTQIDSKIGSASAIN
Ga0114876_116748213300008448Freshwater LakeMTKARDLANASTALSAVDATELGYLDGVTSNIQTQFSN
Ga0114876_117422023300008448Freshwater LakeMTKARDLANAATALSAVSATELAYLDGVTSAIQTQINTKAATTYVD
Ga0114970_1066559933300009163Freshwater LakeMSKARDLANIATTLATVSTTELGYVDGVTSPIQTQINNIDATP
Ga0114969_1009638553300009181Freshwater LakeMTKARDLANASTALSAVSATELGYVDGVTSAIQTQIDAKA
Ga0114967_1043369833300010160Freshwater LakeMTKARDLANAGTALGAVSATELGYVDGVTSAIQTQ
(restricted) Ga0172372_1008845613300013132FreshwaterMSKARDIASAAPAPSTVSATEIGYLDGVSSAIQTQLDGKTAKNTL
Ga0177922_1084637813300013372FreshwaterMTKARDLANASTALSAVSATELAFVDGVTSAIQTQIDAKAPSSTAVTLT
Ga0177922_1090889513300013372FreshwaterMSKARDIASAAPAPSTVSATELGYVDGVTSAIQTQID
Ga0181364_102765013300017701Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKAPS
Ga0181347_101713713300017722Freshwater LakeMTKARDLANAGTALGAVSATELAFVDGVTSAIQTQ
Ga0181362_102874713300017723Freshwater LakeMSKARDLANAGTALGAVTATELGYVDGVTSAIQTHLS
Ga0181362_105100913300017723Freshwater LakeMTKARDLANASTALSAVSATELAFLDGVTSAVQTQIDGKQAVNANV
Ga0181365_107879413300017736Freshwater LakeMTKARDLANAGTALGAVSATELAFVDGVTSAIQAQMD
Ga0181365_108939213300017736Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKAPSS
Ga0181365_109783933300017736Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKA
Ga0181352_109572013300017747Freshwater LakeMTKARDLASAAPAPSTVSATEIGYLDGVSSAIQTQ
Ga0181356_102640213300017761Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQI
Ga0181358_103869653300017774Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAK
Ga0181358_104473413300017774Freshwater LakeMSKARDLANAGTALGAVTATELAFVDGVTSAIQTQIDSKIGS
Ga0181358_105217113300017774Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKALSSTAVTL
Ga0181358_107394013300017774Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQM
Ga0181358_107477743300017774Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKAPSSTAVTL
Ga0181358_107817833300017774Freshwater LakeMTKARDLANASTALSAVSATELAFIDGATSNIQTQLDNVK
Ga0181358_111062713300017774Freshwater LakeMTKARDLANAGTALGAVTATELAFVDGVTSAIQTQIDSKIGS
Ga0181358_118736013300017774Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQIDAKAPSSTAAT
Ga0181357_106147153300017777Freshwater LakeMSKARDLANAGTALGAVSATELAFVDGVTSAIQTQIDAKT
Ga0181357_106215043300017777Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKAPSST
Ga0181357_114868313300017777Freshwater LakeMSKARDLANASTALSAVSATELAFVDGVTSAIQTQI
Ga0181357_132151233300017777Freshwater LakeMTKARDLANSAAAFASVSATELAFVDGVTSAIQTQMDAKAPS
Ga0181349_115819223300017778Freshwater LakeMTKARDLANASTALSAVSATELAFIDGATSNIQTQL
Ga0181346_130169423300017780Freshwater LakeMSKARDIASAIPAPSTVSSAELGYLDGVTSAIQTQLDAKTAKST
Ga0181348_105642013300017784Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKAPSSTA
Ga0181348_106810213300017784Freshwater LakeMTKARDIASAIPAPSTVSSAELGFLDGVTSAIQTQMDAKAASSTAVT
Ga0181348_115929213300017784Freshwater LakeMTKARDLANASTALSAVSATELAFIDGATSNIQTQLDN
Ga0181355_106465813300017785Freshwater LakeMTKARDIASAIPAPSTVDATELGYLDGVTSAIQTQIDAKT
Ga0181355_107535443300017785Freshwater LakeMTKARDLANASTALGAVSATELAFVDGVTSAIQTQIDG
Ga0181355_118669833300017785Freshwater LakeMTKARDLANSAAAFASVSATELAFVDGVTSAIQTQMDAKAPSSTAVTLTGTQTLTN
Ga0181355_120948923300017785Freshwater LakeMTKARDLANASTALSAVSATELAFIDGATSNIQTQLDNVKPAD
Ga0181359_103960913300019784Freshwater LakeMSKARDLANAGTALGAVSATELAFVDGVTSAIQTQ
Ga0181359_104883513300019784Freshwater LakeMTKARDLASAIPAPSTVDATELGFLDGVTSAIQTS
Ga0181359_108537733300019784Freshwater LakeMTKARDLANSAAAFAAVSATELAFVDGVTSAIQTQIDAKAPSSTEVTLTGTQT
Ga0181359_113420633300019784Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKAPSSTAV
Ga0181359_116312713300019784Freshwater LakeMSKARDIASAIPAPSTVSSAELGFLDGVTSAIQTQIDTKQASSTA
Ga0181359_119624813300019784Freshwater LakeMTKARDLANASTALGAVSATELAFLDGVTSAVQTQIDGKQA
Ga0181359_125952113300019784Freshwater LakeMTKARDIASAIPAPSTVSSVELGYLDGVTSAIQTQIDAKIGS
Ga0211734_1061639533300020159FreshwaterMTKARDIASAIPAPSTVSSAELGYLDGVTSAIQTQLDAKTAKSTL
Ga0181354_105982543300022190Freshwater LakeMTKARDLANASTALSAVSATELAFVDGVTSAIQTQMDAKAPSSTAVT
Ga0181351_106159713300022407Freshwater LakeMTKARDIASAIPAPSTVDATELGFLDGVTSAIQTQIDAKTAKATLTTK
Ga0181351_107086033300022407Freshwater LakeMTKARDIASAIPAPSTVSSAELGFLDGVTSAIQTQLDAKTAKS
Ga0214921_1050501533300023174FreshwaterMDSGGTMTKARDLANGATALSAVSATELAYLDGVTSAVQTQIDGKQ
Ga0214919_1031447913300023184FreshwaterMTKARDLANSAAAFSAVSATELGYVDGVTSAIQTQLDAKAASST
Ga0208160_107791513300025647AqueousMTKARDLANASTALSAVSATELGYLDGVTSAVQTQVDAKLATT
Ga0255081_106384213300027155FreshwaterMTKARDLANASTALSAVSATELGYVDGVTSAIQTQMDA
Ga0255097_106148623300027491FreshwaterMTKARDLANASTALSAVSATELGYVDGVTSAIQTQLDAKA
Ga0209651_119584713300027581Freshwater LakeMSKARDLANAGTALGAVSATELAFVDGVTSAIQTQLD
Ga0209769_106593213300027679Freshwater LakeMTKARDLANAGTALGAVSATELAFVDGVTSAIQTQIDA
Ga0209442_125282813300027732Freshwater LakeMTKARDLANAGTALGAVSATELAFVDGVTSAIQTQLDG
Ga0209444_1003583773300027756Freshwater LakeVSKARDLAGAATALNAVTPTELGYLDGVTSAVQTQVDAKIAKSTVTTKG
Ga0209296_1008677133300027759Freshwater LakeMSKARDLANAGTALTSVSATELGYVDGVTSAIQTQIN
Ga0209246_1004273543300027785Freshwater LakeMTKARDLANAGTALGAVSATELAFVDGVTSAIQTQIDAKA
Ga0209353_1046680123300027798Freshwater LakeMTKSRTLADAGTAFTSVSATELAFVDGVTSAIQTQIDGKQAVN
Ga0209354_1016702923300027808Freshwater LakeMTKARDLANASTALSAVSATELAFIDGATSNIQTQLDNVKPADS
Ga0209990_1012593843300027816Freshwater LakeMSKARDIASATPAPSTVSATELGYLDGVSSAIQTQIDSKI
Ga0209400_102676013300027963Freshwater LakeMTKARDLANSAAAFAAVSATELGYVDGVTSAIQTQMDAK
Ga0209284_1035057713300027983FreshwaterMTKARDIASAIPAPATVSSVELGYLDGVTSAIQTQVDSKI
Ga0247723_113276213300028025Deep Subsurface SedimentMSKARDLANAGTALTSVSATELGYLDGVTSAVQTQIDTKAASSTAV
Ga0256305_117605923300028108FreshwaterMTKARDLANASTALSAVSATELGYLDGVTSAVQTQVDAKIAKTL
Ga0119944_101756423300029930AquaticMTKARDIASAAPAPSTVSATEIGYLDGVSSAIQTQL
Ga0315907_1017098543300031758FreshwaterMTKARDIASASPAPSTVSATELGYLDGVSSAIQTQLDAKTAKSTL
Ga0315907_1026477243300031758FreshwaterMTKARDIASASPAPSTVSATELGYLDGVSSAIQTQVDGK
Ga0315909_1005031513300031857FreshwaterMSKARDLANAGTALTTVSATELGYLDGVTSAVQTQINTKA
Ga0315909_1035481213300031857FreshwaterMTKARDIASAAPAPSTVSATELGYLDGVSSAIQTQIDSKI
Ga0315904_1017925953300031951FreshwaterMTKARDLASAAPAPSTVSATELGYLDGVTSNIQTQIDSKTGGIATDTP
Ga0315904_1019022113300031951FreshwaterMSKARDIASATPAPSTVSSTELGYLDGVTSAIQTQINA
Ga0315904_1022152813300031951FreshwaterMTKARDIASATPAPSTVSATELGYLDGVSSAIQTQIDS
Ga0315904_1043556613300031951FreshwaterMSKARDLANAGTALTTVSATELGYLDGVTSAVQTQINAQI
Ga0315906_1054075213300032050FreshwaterMSKARDIASAAPAPSTVSATELGYVDGVTSAIQTQLDAKTAK
Ga0315905_1153734823300032092FreshwaterMTKARDLANAGTALGAVSATELAFVDGVTSAIQTQIDAK
Ga0315903_1027513623300032116FreshwaterMTKARDLANAGTGFTTVSATELGYLDGVTSAVQTQMDAQIPKSIVTTKGDL
Ga0334982_0272511_1_1143300033981FreshwaterMTRARDLASTALNSTVNTTELGYLDGVTSSVQTQLDAK
Ga0334995_0135530_3_1283300034062FreshwaterMTKARDIASAAPAPSTVSATELGYVDGVTSAIQTQLDAKTAK
Ga0334995_0706602_2_1183300034062FreshwaterMSKARDLANAGTALTTVSATELGYLDGVTSAVQTQIDSK
Ga0335010_0288983_1_1353300034092FreshwaterMTKSRDIASGIPAPSTVSSAELGYLDGVTSAIQTQIDTKLATATA
Ga0335053_0234832_2_1243300034118FreshwaterMTKARDIASAAPAPAGVTTTELGYVDGVTSALQTQIDSKIG
Ga0335052_0096960_3_1253300034279FreshwaterMSKARDLANAGTALTSVSATELGYLDGVTSAVQTQLDAKTA


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