Metagenome / Metatranscriptome Family F083442

Basic Information
Family ID	F083442
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	39 residues
Representative Sequence	RNYFFDTLFLNPANLPPGTPMFQDVVSLSYHQNFTPQ
Number of Associated Samples	101
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.12 %
% of genes from short scaffolds (< 2000 bps)	85.84 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Most Common Taxonomy
Group	Bacteria (95.575 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.044 % of family members)
Environment Ontology (ENVO)	Unclassified (23.894 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.407 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.62% β-sheet: 0.00% Coil/Unstructured: 75.38%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF11376	DUF3179	16.81
PF13419	HAD_2	5.31
PF08501	Shikimate_dh_N	4.42
PF03544	TonB_C	1.77
PF14534	DUF4440	1.77
PF13447	Multi-haem_cyto	1.77
PF00561	Abhydrolase_1	0.88
PF03466	LysR_substrate	0.88
PF01797	Y1_Tnp	0.88
PF00083	Sugar_tr	0.88
PF00376	MerR	0.88
PF01488	Shikimate_DH	0.88
PF00246	Peptidase_M14	0.88
PF01301	Glyco_hydro_35	0.88
PF08448	PAS_4	0.88
PF07592	DDE_Tnp_ISAZ013	0.88
PF00027	cNMP_binding	0.88
PF13474	SnoaL_3	0.88
PF00196	GerE	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0169	Shikimate 5-dehydrogenase	Amino acid transport and metabolism [E]	4.42
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.77
COG1874	Beta-galactosidase GanA	Carbohydrate transport and metabolism [G]	0.88
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.58 %
Unclassified	root	N/A	4.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.58 %
Unclassified	root	N/A	4.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.58 %
Unclassified	root	N/A	4.42 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	61.95 %
Unclassified	root	N/A	4.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	31.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.08 %
Unclassified	root	N/A	4.42 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.97 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.19 %
Unclassified	root	N/A	4.42 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.88 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.97 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.42 %
Unclassified	root	N/A	4.42 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	1.77 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.88 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.88 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.97 %
Unclassified	root	N/A	4.42 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	2.65 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.77 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.88 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.88 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.88 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.88 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.97 %
Unclassified	root	N/A	4.42 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2.65 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.77 %
unclassified Gemmataceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae	0.88 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.88 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.88 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.97 %
Unclassified	root	N/A	4.42 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2.65 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.77 %
Gemmataceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium	0.88 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.88 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.88 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001082\|JGI12664J13189_1000958	All Organisms → cellular organisms → Bacteria	3826	Open in IMG/M
3300001356\|JGI12269J14319_10026107	All Organisms → cellular organisms → Bacteria	4008	Open in IMG/M
3300001356\|JGI12269J14319_10370726	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300001546\|JGI12659J15293_10121483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300001867\|JGI12627J18819_10410149	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300002245\|JGIcombinedJ26739_101324076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300005534\|Ga0070735_10068273	All Organisms → cellular organisms → Bacteria	2298	Open in IMG/M
3300005569\|Ga0066705_10545567	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300005591\|Ga0070761_10368132	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300005602\|Ga0070762_10130148	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1488	Open in IMG/M
3300005712\|Ga0070764_10761552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300005764\|Ga0066903_108094053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300006034\|Ga0066656_10705774	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300006174\|Ga0075014_101026314	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300006354\|Ga0075021_10042351	All Organisms → cellular organisms → Bacteria	2616	Open in IMG/M
3300006358\|Ga0068871_101516979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300006358\|Ga0068871_102355122	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300009143\|Ga0099792_10326404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	919	Open in IMG/M
3300009156\|Ga0111538_10343969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1888	Open in IMG/M
3300009624\|Ga0116105_1009934	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M
3300009700\|Ga0116217_10589046	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300009824\|Ga0116219_10759873	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300010361\|Ga0126378_10951492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	964	Open in IMG/M
3300010361\|Ga0126378_11839270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300010877\|Ga0126356_11033956	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300012211\|Ga0137377_10377129	All Organisms → cellular organisms → Bacteria → Acidobacteria	1356	Open in IMG/M
3300012361\|Ga0137360_11069788	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300012362\|Ga0137361_11669066	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300012517\|Ga0157354_1038195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300012917\|Ga0137395_11035196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300012925\|Ga0137419_10641431	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300012930\|Ga0137407_12346328	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	510	Open in IMG/M
3300012960\|Ga0164301_11213740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300012971\|Ga0126369_10092566	All Organisms → cellular organisms → Bacteria	2714	Open in IMG/M
3300012971\|Ga0126369_11135763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300012975\|Ga0134110_10029182	All Organisms → cellular organisms → Bacteria	2151	Open in IMG/M
3300012984\|Ga0164309_11972533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300013105\|Ga0157369_10526577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1222	Open in IMG/M
3300013297\|Ga0157378_11272875	All Organisms → cellular organisms → Bacteria → Acidobacteria	776	Open in IMG/M
3300013306\|Ga0163162_10095801	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3055	Open in IMG/M
3300014164\|Ga0181532_10302925	Not Available	904	Open in IMG/M
3300014489\|Ga0182018_10176339	Not Available	1208	Open in IMG/M
3300014489\|Ga0182018_10268309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300014501\|Ga0182024_11496126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300015241\|Ga0137418_11007371	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300015245\|Ga0137409_11437583	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300015264\|Ga0137403_10805099	All Organisms → cellular organisms → Bacteria → Acidobacteria	794	Open in IMG/M
3300015374\|Ga0132255_105469974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300016357\|Ga0182032_10102341	All Organisms → cellular organisms → Bacteria	2024	Open in IMG/M
3300017972\|Ga0187781_10243688	All Organisms → cellular organisms → Bacteria → Acidobacteria	1272	Open in IMG/M
3300017972\|Ga0187781_10517994	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	857	Open in IMG/M
3300017996\|Ga0187891_1221300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300018003\|Ga0187876_1046217	All Organisms → cellular organisms → Bacteria → Acidobacteria	1823	Open in IMG/M
3300018013\|Ga0187873_1258030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300018025\|Ga0187885_10525325	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300018042\|Ga0187871_10021579	All Organisms → cellular organisms → Bacteria → Acidobacteria	4151	Open in IMG/M
3300018057\|Ga0187858_10432386	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300018064\|Ga0187773_10677208	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300018085\|Ga0187772_10920047	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300018085\|Ga0187772_10937894	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300018086\|Ga0187769_10593485	All Organisms → cellular organisms → Bacteria → Acidobacteria	837	Open in IMG/M
3300020580\|Ga0210403_10959523	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300020581\|Ga0210399_10265424	All Organisms → cellular organisms → Bacteria → Acidobacteria	1432	Open in IMG/M
3300020583\|Ga0210401_10488836	All Organisms → cellular organisms → Bacteria → Acidobacteria	1093	Open in IMG/M
3300021088\|Ga0210404_10651036	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300021178\|Ga0210408_11005349	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300021401\|Ga0210393_11372000	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300021402\|Ga0210385_10003162	All Organisms → cellular organisms → Bacteria → Acidobacteria	9894	Open in IMG/M
3300021403\|Ga0210397_10910912	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
3300021406\|Ga0210386_10148530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1959	Open in IMG/M
3300021407\|Ga0210383_10550964	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300021420\|Ga0210394_11361052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300021474\|Ga0210390_11281313	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300021475\|Ga0210392_10766687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300021479\|Ga0210410_11346078	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300021559\|Ga0210409_11285360	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300021559\|Ga0210409_11566391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300024225\|Ga0224572_1001704	All Organisms → cellular organisms → Bacteria → Acidobacteria	3339	Open in IMG/M
3300025464\|Ga0208076_1024519	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1046	Open in IMG/M
3300025927\|Ga0207687_10447518	All Organisms → cellular organisms → Bacteria → Acidobacteria	1071	Open in IMG/M
3300025928\|Ga0207700_10620330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	963	Open in IMG/M
3300026371\|Ga0257179_1041435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	585	Open in IMG/M
3300026809\|Ga0207820_109910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300027370\|Ga0209010_1001377	All Organisms → cellular organisms → Bacteria	6242	Open in IMG/M
3300027370\|Ga0209010_1047025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	735	Open in IMG/M
3300027505\|Ga0209218_1084418	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300027583\|Ga0209527_1154519	Not Available	507	Open in IMG/M
3300027824\|Ga0209040_10125759	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300027829\|Ga0209773_10367197	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300027854\|Ga0209517_10162245	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium	1418	Open in IMG/M
3300027898\|Ga0209067_10091965	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300027898\|Ga0209067_10964678	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300028906\|Ga0308309_11236098	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300029955\|Ga0311342_10433773	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300030007\|Ga0311338_10131768	Not Available	3022	Open in IMG/M
3300030399\|Ga0311353_10243886	All Organisms → cellular organisms → Bacteria → Acidobacteria	1668	Open in IMG/M
3300030518\|Ga0302275_10033276	All Organisms → cellular organisms → Bacteria	4104	Open in IMG/M
3300030659\|Ga0316363_10158912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	964	Open in IMG/M
3300031232\|Ga0302323_101089684	Not Available	890	Open in IMG/M
3300031474\|Ga0170818_114112772	All Organisms → cellular organisms → Bacteria → Acidobacteria	741	Open in IMG/M
3300031718\|Ga0307474_10986139	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300031718\|Ga0307474_11274001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300031823\|Ga0307478_10217097	All Organisms → cellular organisms → Bacteria	1544	Open in IMG/M
3300031996\|Ga0308176_10390953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1385	Open in IMG/M
3300032001\|Ga0306922_10845145	All Organisms → cellular organisms → Bacteria → Proteobacteria	954	Open in IMG/M
3300032160\|Ga0311301_10227318	All Organisms → cellular organisms → Bacteria	3129	Open in IMG/M
3300032805\|Ga0335078_10663560	All Organisms → cellular organisms → Bacteria → Acidobacteria	1301	Open in IMG/M
3300032895\|Ga0335074_10221870	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2268	Open in IMG/M
3300032897\|Ga0335071_11427371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300032954\|Ga0335083_10679401	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	838	Open in IMG/M
3300032954\|Ga0335083_11525263	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300033134\|Ga0335073_11066788	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	827	Open in IMG/M
3300034091\|Ga0326724_0513282	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.04%
Host-Associated	Host-Associated	7.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.65%
Aquatic	Environmental → Aquatic	12.39%
Plants	Host-Associated → Plants	7.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.34%
Freshwater	Environmental → Aquatic → Freshwater	8.85%
Peat	Environmental → Terrestrial → Peat	5.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.42%
Sediment	Environmental → Aquatic → Sediment	3.54%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.77%
Roots	Host-Associated → Plants → Roots	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.27%
Loam	Environmental → Terrestrial → Soil → Loam	13.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.39%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.04%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.08%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.19%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.31%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.31%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.77%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.77%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.77%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026809	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 47 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083442

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12664J13189_10009581	3300001082	Forest Soil	RNYFFDTQFLNPNNLPPGTPMFQDVVSLSYHQTFTPQ*
JGI12269J14319_100261071	3300001356	Peatlands Soil	YFFDTQFLNPANLPPGTPMFQDTVSLSYHQSFTPQ*
JGI12269J14319_103707261	3300001356	Peatlands Soil	PPSRSYSFDTLFLNPSGLPPGTPMLQDLVNLSYHQNFTPR*
JGI12659J15293_101214831	3300001546	Forest Soil	PATRNYFFDVLFLNPANLPPATPEFQDIDSLSYHQNFTPH*
JGI12627J18819_104101491	3300001867	Forest Soil	NYFFDTQFLNPANLPPGTPMFQDVVSLSYHQNFTPQ*
JGIcombinedJ26739_1013240761	3300002245	Forest Soil	RNYFFDVLFLNPANLPPATPEFQDIDSLSYHQNFTPH*
Ga0070735_100682731	3300005534	Surface Soil	SVYGAPKRNYFFDTQFLNPANLPPGTPSFQDVVSLSYHQNFTPQ*
Ga0066705_105455672	3300005569	Soil	CTAVYGAPVRNYFFDTQFLNPNNLPPGTPLFQDVVSLSYHQNFTPQ*
Ga0070761_103681321	3300005591	Soil	GAPNRNYFFDTQFQNPNFLPPGTPMFQDVVALSSHQNFTPQ*
Ga0070762_101301481	3300005602	Soil	PTRNYFFDNQFLNPNNLPPGTPMFQDVVSLGFNQNFTPQ*
Ga0070764_107615522	3300005712	Soil	VYDAPTRNYFFDTQFLNPNNLPPGTPMFQDVVSLSYHQNFTPQ*
Ga0066903_1080940531	3300005764	Tropical Forest Soil	FYFDTLFLNPADLPPGTPMFQDVVNLSYHQNFTPQ*
Ga0066656_107057741	3300006034	Soil	YSFDTLFLNPANLPPGTPTFQDVVNLSYHQNFTPQ*
Ga0075014_1010263142	3300006174	Watersheds	NYFFDTQFLNPANLPPGTPQFQDTVSLSYHQSFTPQ*
Ga0075021_100423511	3300006354	Watersheds	YYFDSAFLDPAKLPPGTPMLQDVVNLTYWQDFKPY*
Ga0068871_1015169792	3300006358	Miscanthus Rhizosphere	RHYAFDTLFSNPANLPPGTPMFRDVDNLSYRQDLTPR*
Ga0068871_1023551222	3300006358	Miscanthus Rhizosphere	GAPNRSYAFDRLFLDPANLPPGTPMFKDVNNLTYRQDFTPH*
Ga0099792_103264043	3300009143	Vadose Zone Soil	VVYAPPTRNYFFDTLFLNPANLPPGTPMFQDVVSLSYHQNFTPQ*
Ga0111538_103439692	3300009156	Populus Rhizosphere	DRDYSFDTLFLDPAQLPPGTPMFRDVANTSYRQDLTPSPY*
Ga0116105_10099344	3300009624	Peatland	FFDTQFLNPNNLPPGTPMFQDVVSLGFHQNFTPQ*
Ga0116217_105890461	3300009700	Peatlands Soil	YYFDVLFLNPANLPPGTPMFQDVVNLSYHQNFTPQ*
Ga0116219_107598731	3300009824	Peatlands Soil	SPPDKRNYFFDTQFLNPANLPPGTPMFQDTVSLSYHQSFTPQ*
Ga0126378_109514922	3300010361	Tropical Forest Soil	PTRQFYFDTLFLNPADLPPGTPVFQDIVNLSYHQNFTPQ*
Ga0126378_118392701	3300010361	Tropical Forest Soil	KRNYFFDTQFLNPANLPPGTPMFQDVVSLSYHQSFTTQ*
Ga0126356_110339561	3300010877	Boreal Forest Soil	TRSYAFDTLFLNPANLPPGTPMFQDVVNLSYHQNFTPQ*
Ga0137377_103771293	3300012211	Vadose Zone Soil	PPTRNYYFDTLFLNPANLPPGTPMFQDVVNLSYRQNFQPQ*
Ga0137360_110697881	3300012361	Vadose Zone Soil	PNRNYAFDQLFLDPANLPPGTPMFKDVNNLTYRQDFTPH*
Ga0137361_116690661	3300012362	Vadose Zone Soil	KYYFDTLFLNPANLPPGTPMFQDVVNLSYRQNFQPQ*
Ga0157354_10381952	3300012517	Unplanted Soil	VYGAPVRNYFFDTQFLNPANLPPGTPMFQDVVSLSYHQNFTPQ*
Ga0137395_110351962	3300012917	Vadose Zone Soil	FKCCSVVYAPPTRNYFFDTLFLNPANLPPGTPMFQDVVSLSYHQNFTPQ*
Ga0137419_106414312	3300012925	Vadose Zone Soil	RNYFFDTLFLNPANLPPGTPMFQDVVSLSYHQNFTPQ*
Ga0137407_123463282	3300012930	Vadose Zone Soil	YFDTAFLDPAKLPPGTPMLQDVVNLTYWQDFKPY*
Ga0164301_112137401	3300012960	Soil	RAYQFDQLFLKTQKLPPATPMFQDVDNLSYHQNFTPQ*
Ga0126369_100925661	3300012971	Tropical Forest Soil	HFDVLFLNPANLPPGTPMFQDIVNLSYQQSFTPQ*
Ga0126369_111357631	3300012971	Tropical Forest Soil	RNYFFDTQFLNPANLPPGTPMFQDVVSLSYHQNFTPQ*
Ga0134110_100291824	3300012975	Grasslands Soil	PPDRKYYFDTQFLNPANLPPGTPMLQDVVNLTYWQDFKPY*
Ga0164309_119725331	3300012984	Soil	RNYFFDTMFLNPANLPPGPPMLQDVVSLSYHQNFTPQ*
Ga0157369_105265771	3300013105	Corn Rhizosphere	PRYYYFDTAFLDPAKLPPGTPMLQDVVNLTYWQDFKPY*
Ga0157378_112728752	3300013297	Miscanthus Rhizosphere	YYYFDTAFLDPAKLPPGTPMLQDVVNLSYWQDFKPY*
Ga0163162_100958013	3300013306	Switchgrass Rhizosphere	YYFDTAFLDPAKLPPGTPMLQDVVNLSYWQDFKPY*
Ga0181532_103029252	3300014164	Bog	STYNAPVRNYFFDTQFLNPANLPPGTPMFQDVVSLSYHQNFTPQ*
Ga0182018_101763391	3300014489	Palsa	APVRNYFFDTQFLNPANLPPGTPMFQDVVSLSYHQNFTPQ*
Ga0182018_102683091	3300014489	Palsa	NAVYGAPNRNYFFDTQFLNPANLPPGTPMFQDVVSLGFHQNFTPQ*
Ga0182024_114961261	3300014501	Permafrost	DGGGPNGSSVYTPPTRNYFFDVLFLNPANLPPATPEFQAIDSLSSHQNFTPR*
Ga0137418_110073711	3300015241	Vadose Zone Soil	NAVYGAPNRNYFFDTQFLNPNNLPPGTPMFQDVVSLSYHQNFTPQ*
Ga0137409_114375831	3300015245	Vadose Zone Soil	RKYYFDTLFLNPANLPPGTPMFQDVVNLSYRQNFQPQ*
Ga0137403_108050991	3300015264	Vadose Zone Soil	YYFDTAFLDPAKLPPGTPMLQDVVNLTYWQDFKPY*
Ga0132255_1054699742	3300015374	Arabidopsis Rhizosphere	PTRDYHFDVLFLNPVNLPPGTPMFEDIVNLSYQQNFTPQ*
Ga0182032_101023415	3300016357	Soil	APKRNYFFDTQFLNPANLPPGTPMFQDVVSLSYHQNFTPQ
Ga0187781_102436881	3300017972	Tropical Peatland	GAPQRNYFFDTLFENPQNLPPGTPSFQDVVSLSYHQSFTPQ
Ga0187781_105179941	3300017972	Tropical Peatland	YFFDTLFENPANLPPGTPMFQDVVSLGYHQTFTPQ
Ga0187891_12213002	3300017996	Peatland	FLFDTDFSIPANLPPGTPMFKDVEALGYRQGLQARAN
Ga0187876_10462171	3300018003	Peatland	RNYFFDTQFLNPNNLPPGTPMFQDVVSLGFHQNFTPQ
Ga0187873_12580301	3300018013	Peatland	NSVYDAPTRNYFFDTQFLNPNNLPPGTPMFQDVVSLGFHQNFTPQ
Ga0187885_105253252	3300018025	Peatland	APTRNYFFDTQFLNPNNLPPGTPMFQDVVSLGFHQNFTPQ
Ga0187871_100215798	3300018042	Peatland	PPPRNYYFDVLFLTPSNLPPATPQFQDIDNLSYHQNFTPQ
Ga0187858_104323861	3300018057	Peatland	SAPNRNFYFDTLFLNPNNLPPGTPMFQDIVNLSYHQNFTPQ
Ga0187773_106772082	3300018064	Tropical Peatland	RKYYFDTLFLNPANLPPGTPTFEDINNLAYRQSFTPQ
Ga0187772_109200471	3300018085	Tropical Peatland	PTRDYYFDTLFLNPSNLPPGTPMLEDIVSMSYRQNFTPQ
Ga0187772_109378942	3300018085	Tropical Peatland	YSFDTLFLNPSNLPPGTPMFQEVDNLSYHQNFTPQ
Ga0187769_105934853	3300018086	Tropical Peatland	KYYFDVLFLNPNNLPPATPEFQDVVNLSYHQNFQPH
Ga0210403_109595231	3300020580	Soil	FYFDTLFLQYQNLPPGTPEFQDIDNLSYQQNFKPQ
Ga0210399_102654241	3300020581	Soil	YYFDNAFLDPTKLPPGTPMLQDVVNLTYWQDFKPY
Ga0210401_104888361	3300020583	Soil	PGRDYHFDVLFLNPPNLPPGTPMFQDIVNLSYQQNFMPQ
Ga0210404_106510361	3300021088	Soil	VYNAPNRNFYFDTLFLNPNNLPPGTPMFQDIVNLSYHQNFTPQ
Ga0210408_110053491	3300021178	Soil	RYYYFDNAFLDPTKLPPGTPMLQDVVNLTYWQDFKPY
Ga0210393_113720001	3300021401	Soil	YFFDTNFLNPNNLPPGTPMFQDVVSLGYHQSFSSQ
Ga0210385_100031621	3300021402	Soil	APTRNYFFDTQFLNPTQLPPGTPMFQDVVSLSYHQNFTPQ
Ga0210397_109109121	3300021403	Soil	APYRNYSFDTLFLNPNNLPPATPEFQDVNNVTYRQDFTPY
Ga0210386_101485301	3300021406	Soil	RKYFFDTLFLNPKNLPPGTPMFQDIVNLSYRQNFQAQ
Ga0210383_105509641	3300021407	Soil	RNYFFDTNFLNPNNLPPGTPMFQDVVSLGYHQSFSSQ
Ga0210394_113610522	3300021420	Soil	SPPGRDYHFDVLFLNPPNLPPGTPMFQDIVNLSYQQNFMPQ
Ga0210390_112813132	3300021474	Soil	PVREFYFDTLFLNPNNLPPGTPMFQDIVNLSYHQNFTPQ
Ga0210392_107666872	3300021475	Soil	YSAPTRNYFFDVLFLTPSNLPPATPQFQDIDNLSSHQNFTPQ
Ga0210410_113460781	3300021479	Soil	VREFYFDTLFLNPNNLPPGTPMFQDIVNLSYHQNFTPQ
Ga0210409_112853602	3300021559	Soil	RNYFFDTQFLNPANLPPGTPQFQDTVSLSYHQAFAPQ
Ga0210409_115663911	3300021559	Soil	NYYFDVLFLNPSNLPPATPEFQDIDTLSYHQNFTPQ
Ga0224572_10017041	3300024225	Rhizosphere	MVYNAPVREFYFDTLFLNPNNLPPGTPMFQDIVNLSYHQNFTPQ
Ga0208076_10245193	3300025464	Arctic Peat Soil	YNPPTRNYYFDVLFLIPANLPPATPEFQDINSLSYHENFTPR
Ga0207687_104475182	3300025927	Miscanthus Rhizosphere	GPPPRYYYFDTAFLDPTKLPPGTPMLQDVVNLTYWQDFKPY
Ga0207700_106203303	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	NYSFDTLFLNPANLPPGTPTFQDVVNLSYHQNFTPQ
Ga0257179_10414352	3300026371	Soil	SPPNRNYYFDTAFLDPTKLPPGTPMLQDVVNLTYWQDFKPY
Ga0207820_1099101	3300026809	Tropical Forest Soil	RSYAFDILFLNPANLPPGTPMFQDVVNLSYHQNFTPQ
Ga0209010_10013778	3300027370	Forest Soil	RNYFFDTQFLNPNNLPPGTPMFQDVVSLSYHQTFTPQ
Ga0209010_10470252	3300027370	Forest Soil	SSVYTPPTRNYFFDVLFLNPANLPPATPEFQDIDSLSSHQNFTPR
Ga0209218_10844181	3300027505	Forest Soil	YNAPVRHFYFDTLFLNPNNLPPGTPMFQDIVNLSYHQNFTPQ
Ga0209527_11545191	3300027583	Forest Soil	SPPTRSYAFDTLFLNPANLPPGTPMFQDVVNLSYHQNFTPQ
Ga0209040_101257594	3300027824	Bog Forest Soil	APTRNYFFDTQFLNPNQLPPGTPMFQDVVSLSYHQNFTPQ
Ga0209773_103671971	3300027829	Bog Forest Soil	TTVYNAPTRHFYFDTLFLNPNNLPPGTPMFQDIVNLSYHQNFTPQ
Ga0209517_101622453	3300027854	Peatlands Soil	KRNYFFDTQFLNPANLPPGTPMFQDTVSLSYHQSFTPQ
Ga0209067_100919651	3300027898	Watersheds	RKYYFDTQFLNPANLPPGTPMFQDIVSLSYHQNFTPQ
Ga0209067_109646781	3300027898	Watersheds	VYVAPIRDYYFDSLFLTPSNLPPGTPMFQDIDNLSYHQNFTPQ
Ga0308309_112360981	3300028906	Soil	FYFDTLFLNPNNLPPGTPMFQDIVNLSYHQNFTPQ
Ga0311342_104337733	3300029955	Bog	PTRNYFFDTQFLNPNNLPPGTPMFQDVVSLGFHQNFTPQ
Ga0311338_101317687	3300030007	Palsa	PSARNYFFDTQFLNPNNLPPGTPAFQDVVSLSYHQNFTPQ
Ga0311353_102438861	3300030399	Palsa	CNSVYAAPTRNYFFDTQFQNPNNLPPGTPMFQDVVSLSFHQNFTPQ
Ga0302275_100332761	3300030518	Bog	FFDTQFLNPNNLPPGTPMFQDVVSLSYHQNFNPNPNN
Ga0316363_101589121	3300030659	Peatlands Soil	YFFDTQFLNPANLPPGTPMFQDTVSLSYHQSFTPQ
Ga0302323_1010896842	3300031232	Fen	SPPARKYYFDTLFLTPSNLPPATPEFQEVESLSYHQNFQPQ
Ga0170818_1141127721	3300031474	Forest Soil	TRSYAFDTLFLNPANLPPGTPMFQDVVNLSYHQNFTPQ
Ga0307474_109861391	3300031718	Hardwood Forest Soil	YGAPVRNYSFDTLFLNPANLPPGTPMFQDVVSLSYHQGFVPQ
Ga0307474_112740012	3300031718	Hardwood Forest Soil	SYAFDTLFLNPANLPPGTPMFQDVVNLSYHQNFTPQ
Ga0307478_102170971	3300031823	Hardwood Forest Soil	RSYAFDTLFLNPANLPPGTPMFQDVVNLSYHQNFTPQ
Ga0308176_103909534	3300031996	Soil	RNYSFDTLFLNPANLPPGTPTFQDVVNLSYHQNFTPQ
Ga0306922_108451451	3300032001	Soil	NYFFDTQFLNPANLPPGTPSFQDVVSLSYHQNFTPQ
Ga0311301_102273185	3300032160	Peatlands Soil	YSPPDKRNYFFDTQFLNPANLPPGTPMFQDTVSLSYHQSFTPQ
Ga0335078_106635602	3300032805	Soil	VYGAPVRNYFFDNLFLNPNNLPPGTPMFQDVVSLSYHQNFTPQ
Ga0335074_102218703	3300032895	Soil	NYFFDTQFLNPQNLPPGTPMFQDVISLSYHQNFTPQ
Ga0335071_114273711	3300032897	Soil	QRNYFFDTQFLNPNNLPPGTPMFQDVVSLSYHESFTPQ
Ga0335083_106794011	3300032954	Soil	APTRNYFFDTLFQDPSNLPPGTPSFQDVVSLSYHQSFTPQ
Ga0335083_115252631	3300032954	Soil	RNYYFDVLFLNPANLPPATPEFQDVVNLSYHQNFTPR
Ga0335073_110667883	3300033134	Soil	PTRNYYFDVLFLNPANLPPATPEFQDVENLSYHQNFTPQ
Ga0326724_0513282_483_611	3300034091	Peat Soil	VYPPTRDYYFDVLFLNQANLPPATPMFQDVVNLSYHQNFAPQ

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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