Basic Information | |
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Family ID | F083406 |
Family Type | Metagenome |
Number of Sequences | 113 |
Average Sequence Length | 49 residues |
Representative Sequence | VDQLGPNALGETLEPGRVADCYLGLLLPPGPAGEPEAGTVLIVAP |
Number of Associated Samples | 72 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 99.12 % |
% of genes near scaffold ends (potentially truncated) | 95.58 % |
% of genes from short scaffolds (< 2000 bps) | 98.23 % |
Associated GOLD sequencing projects | 72 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.23 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (55.752 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.009 % of family members) |
Environment Ontology (ENVO) | Unclassified (29.204 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.133 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.23 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Serpentine Soil Grasslands Soil Terrestrial Soil Soil Soil Groundwater Sand Sediment Soil Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
F24TB_112231492 | 3300000550 | Soil | VNQLGPNALGEVLEPGRVADCYLGLLLSPGPVGEPEAGTVLIVAPASLLHPRVPQPDGSL |
JGI10216J12902_1044587661 | 3300000956 | Soil | VNQFGPNALGETLTPGRVADCYLGLLLAPGPVGEPEAGTVLIVAPAALL |
JGI10216J12902_1051025321 | 3300000956 | Soil | VDQLGPNALGEVLEPGKISDCYLGLLLPPPSAGEPEAGTILIV |
JGI10216J12902_1102942112 | 3300000956 | Soil | VDQLGPNALGEVLEPGRVADCYLGLLQPPGSAGEPEAGTVLIVAPASLLHP |
F14TB_1001679312 | 3300001431 | Soil | VNQLGPNALGEVLEPGRVADCYLGLLLSPGPVGEPEAGTVLIVAPA |
Ga0075417_102488073 | 3300006049 | Populus Rhizosphere | VQHLGPNAFGETLEPGRVGDCYLGLLLPPGPAGEPEAGTI |
Ga0075433_103538821 | 3300006852 | Populus Rhizosphere | VDQLGPNALGEVLGPGRVADFYLGLLLPPGSAGEPEAATVLIVAPAALLHPRVPQ |
Ga0126307_102920811 | 3300009789 | Serpentine Soil | VDQLGPNALGEVLEPGRVADCYLGLLLAPRPAGEPEAGTVLIVAPAAL |
Ga0126307_108087931 | 3300009789 | Serpentine Soil | VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILIVAPAALLHPR |
Ga0105076_10004101 | 3300009816 | Groundwater Sand | VDQLGPNALGETLEPGRVTDCYLGLLLPPGPAGEPEAGTVLVVAPAALLHPA |
Ga0105076_10643072 | 3300009816 | Groundwater Sand | VSELGPNAFGEPVDPSRVADCYLGLLLPPPPAGEPEAGTVLVVGPTALLHPRVPQPAG |
Ga0105066_11117502 | 3300009822 | Groundwater Sand | VDQLGPNALGETLEPGRVTDCYLGLLLPPGPAGEPEAGTVLVV |
Ga0105068_10404872 | 3300009836 | Groundwater Sand | VDQLGPNALGEVIEPGRVADCYLGLLLVPGPAGELEAGTVLVVA |
Ga0105068_10883711 | 3300009836 | Groundwater Sand | VDQLGPNALGESLEPGRVADCYLGLRLPPGPTGEPEAGTVLIVAPAALLHPGVPQPAGSL |
Ga0126313_109389032 | 3300009840 | Serpentine Soil | VDQLGPNALGETLEPGRVADCYLGLLLPPGPAGEPE |
Ga0126313_118056632 | 3300009840 | Serpentine Soil | VQQLGPNAFGETLESGRVADCYLGLLLPPPPAGEPEAGTVLIVA |
Ga0105074_10519451 | 3300010029 | Groundwater Sand | VDQLGPNALGEVLEPGRVTDCYLGLLLPPGPAGEPEAGTILIVAPAALLHPAVPQP |
Ga0126315_111921832 | 3300010038 | Serpentine Soil | VGTDQFGLNALGETLEPSRVADCYLGLLLPPGPAGEPEAGTVLIVTPAALLHPDVPQPTG |
Ga0126308_102274231 | 3300010040 | Serpentine Soil | VDQLGPNALGEVLEPGRVADCYLGFLLPPGPAGEPEAGTILIVAPAALLHPRVPQPDGSLVY |
Ga0126308_110151572 | 3300010040 | Serpentine Soil | VDQLGPNALGETLEPGRVTDCYLGLLLPPGPAGELEAGTVLVVAP |
Ga0126312_101647751 | 3300010041 | Serpentine Soil | VDQLGPNALGETLESGRVGDCYLGLLLPPGSAGEPEAGTILILAPAALLHPRIPQPAGSLVYQL |
Ga0126312_101846221 | 3300010041 | Serpentine Soil | VDQLGPNALGETLEPGRVADCYLGLLLPPAPAGEPEAGTILILAPAALLHP |
Ga0126312_103933801 | 3300010041 | Serpentine Soil | VDSFGPNALGETLEPGRVADCYLGLLLPPGPAGEPEAGTVLVVAPAALLRPGVAQPA |
Ga0126312_104179091 | 3300010041 | Serpentine Soil | VDQLGPNALGEVLEPGRVAHCYLGLLLPPGSVGEPEAGTVLVVDPAALLHPRIPQPAGSL |
Ga0126314_102987833 | 3300010042 | Serpentine Soil | VDQLGPNALGEVLKPGRVADCYLGLLLPPGPAGEPEAGTILIVAP |
Ga0126314_108126492 | 3300010042 | Serpentine Soil | VDQLGPNALGEVLEPGRVADCYLGLPLPPGPAGEPEAGTILIVAPAALL |
Ga0126314_111184252 | 3300010042 | Serpentine Soil | VDQLGPNALGETLEPGRVTDCYLGLLLPPGPAGELE |
Ga0126310_101711323 | 3300010044 | Serpentine Soil | VDQLGPNALGQVLKAGRVADCYLGLLLPPGPAGEPEAGTILVVAPA |
Ga0126310_114545282 | 3300010044 | Serpentine Soil | VDQLGRNALGESLEPGRTNDCYLGLLLPPPPAGELEAGTI |
Ga0126311_112376041 | 3300010045 | Serpentine Soil | VDQLGPNALGETLESGRVGDCYLGLLLPPGPAGEPEAGTILIVAPATLLHRRIPQPAGS |
Ga0134080_103470821 | 3300010333 | Grasslands Soil | VDQLGPNALGAVLEPGRVADCYLGLLLSPGPVGEPEAGTVLIVAPAALLHPRVPQPD |
Ga0134062_103673362 | 3300010337 | Grasslands Soil | VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILIVAPATLLHPAVS* |
Ga0138505_1000344553 | 3300010999 | Soil | LAPNALGEALEPGRAADCYVGLLLPPGPVGELEAGTILIVAPAALLHPRVPQSDGAWCMH |
Ga0138513_1000540751 | 3300011000 | Soil | VDQLGPNALGEVLEPGRVADCYLGLLLPPGSAGEPEAGTILVVAPASLLHPRVP |
Ga0137369_107127131 | 3300012355 | Vadose Zone Soil | VDQLGANALGEVLEPGRVADCYLGLLLPPPPAGEPEAGIILIVGPSTLLHPRVPQPAGTL |
Ga0157286_104666351 | 3300012908 | Soil | VDQLGPNALGEILEPGRIADCYLGLLLPPGPAGEPEAGTILIVAPAALLHP |
Ga0162653_1000481482 | 3300012937 | Soil | LAPNALGEALEPGRAADCYVGLLLPPGPVGELEAGTIL |
Ga0162653_1000659332 | 3300012937 | Soil | VDQLGPNALGEILEPGRVADCYLGLLLPPGSVGELEAGTVLVVAPAALLHPGVPQPAGSLFY |
Ga0182000_103984951 | 3300014487 | Soil | VDQVGPNALGEILEPGRVADCFLGLLLPPGSAGELEAGTVLVVAPASLLHPGVPQ |
Ga0182000_104318161 | 3300014487 | Soil | VDQLGPQRAREALEPGRVADCYLGLLLPPEPTGEPEAGTILI |
Ga0182000_105231401 | 3300014487 | Soil | VDRLGPNALGEVLEPGKISDCYLGLLLRPPSAVEPEAGTILIVAPTALLHPAVPQP |
Ga0120193_100511772 | 3300014965 | Terrestrial | VDQLGANAFGENLEPGRVTDCSLGLLLPPGPAGEP |
Ga0184634_101351581 | 3300018031 | Groundwater Sediment | MDQFGPNALGETLVPGRVTDCYLGLLLPPGPAGEPEAGTILVVAP |
Ga0184620_100503721 | 3300018051 | Groundwater Sediment | VDQLGPNALGEVLEPGRVADCYLGLLLPPGSAGEPEAGTILIVAPA |
Ga0184635_103047593 | 3300018072 | Groundwater Sediment | VDQLGPNALGEVLEPGRVTDCYLGLLLPPGPAGEPEAGTILVVAPVGLLHPRVPQPDGSLVY |
Ga0184624_103588411 | 3300018073 | Groundwater Sediment | VDQLGPNALGEVLEAGRVVNCYLGLLLSPGPVGEPEAGTVLVVAPAALLHPRVPQPPGSL |
Ga0184624_104662471 | 3300018073 | Groundwater Sediment | VDQLGPNALGEALEPGRVPDCYLGLLLPPGPAGEPEA |
Ga0184612_100917331 | 3300018078 | Groundwater Sediment | VGTDQFGPNALGETLEPSRVADCYLGLLLPPGPAGEPEAGTVLIVTPAAL |
Ga0184625_102599882 | 3300018081 | Groundwater Sediment | VDQLGPNALGEVLEAGRVADCYLGLLLPPGPAGEPEAGTILVVA |
Ga0190275_123281552 | 3300018432 | Soil | VGTDQFGPNALGETLEPSRVADCYLGLLLPPGPAGEPEAGTVLIVAPAVLL |
Ga0190270_114316131 | 3300018469 | Soil | VGTDQFGPNALGETLEPSRVADCYLGLLLPPGPAGEPEA |
Ga0193704_10524151 | 3300019867 | Soil | VGLLGPNANGQLLQPGRVADCYLGLLVPPGLVGEPEAGTVLIVAAAALLHPRVPQ |
Ga0224452_11416662 | 3300022534 | Groundwater Sediment | VDQFGPNALGETLVPGRVTDCYLGLLLPPGPAGELEAGTVLVVAAAALLHPGVP |
Ga0222623_102196181 | 3300022694 | Groundwater Sediment | MRAVDQFGPNALGETLEPGRVADCYLGLLLPPGPAGEPEVGT |
Ga0222623_102969581 | 3300022694 | Groundwater Sediment | VDQLGPNALGEVLEAGRVADCYLGLLLPPGPAGEPEAGTILVVAPAALLHPRVPQPDGTL |
Ga0222622_108908911 | 3300022756 | Groundwater Sediment | VDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVLVVGP |
Ga0207668_114505841 | 3300025972 | Switchgrass Rhizosphere | VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILIVAPAALLHPRV |
Ga0209846_10346271 | 3300027277 | Groundwater Sand | VDQFGPNALGEVLEPGRVADCYLGLLLPPPPAGEPEA |
Ga0209382_117452212 | 3300027909 | Populus Rhizosphere | VNQLGPNALGEVLKPGRVADCHLSLLLPPGPVGEPEAGTILIV |
Ga0247828_111317662 | 3300028587 | Soil | VDQLGPNALGETLEPGRVADCYLGLLLPPGPAGEPEAGTVLIVAPAALLHPGVPQPAGATIR |
Ga0247821_111114342 | 3300028596 | Soil | VDQFGPNALGETLEPGRVTDCYLGLLLPPGPAGEPEAGTILI |
Ga0247819_108933781 | 3300028608 | Soil | VDQLGPNALGEVLEPGRVPDCYLGLLLPPGPAGEPEAGTILIVAPATL |
Ga0307307_101951271 | 3300028718 | Soil | VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILIVAPAALLHPAVLQPAGSL |
Ga0307301_101725522 | 3300028719 | Soil | VDQLGPNALGETLEPGRVADSYLGLLLPPGPAGEPEAGTVLIVSPSTLLHPGVPQPAGSLVY |
Ga0307317_101698792 | 3300028720 | Soil | MDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVLVVGPAALLHPRVP |
Ga0307317_101981622 | 3300028720 | Soil | VDQLGPNALGEVPESGRVTDCYLALLLPPGPAGEPEAGTVLIVGPAALLDPRVPQPEG |
Ga0307319_103208551 | 3300028722 | Soil | VDQLGPNALGEVLEPGRVADCYLGLLLPSGPAGEPEAGTILIVGPST |
Ga0307316_103225722 | 3300028755 | Soil | VDPLGPNTLGEVLEPGRVADCYLGLLLPPPHAGELEA |
Ga0307320_100533941 | 3300028771 | Soil | MRAVDQLGPNALGETLEPGRVVDCYLGLLLPPGPAGEPEAGTVLAVACR |
Ga0307320_103467651 | 3300028771 | Soil | VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEA |
Ga0307320_103543501 | 3300028771 | Soil | VDQFDPNALDETLAPGRVTDCYLGLLLPPGSAGEPEVGTF |
Ga0307323_101904291 | 3300028787 | Soil | VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAG |
Ga0307287_101063971 | 3300028796 | Soil | VDQLGPNALGEVLEPGRVADCYLGLLLPPGSAGEPEAGTILVVAPAALLHPRVPQPE |
Ga0307287_103520681 | 3300028796 | Soil | VDQLGPNALGEVLEAGRVADCYLGLLLPPGPAGEPEAGTILVVAPA |
Ga0307305_102084792 | 3300028807 | Soil | MDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVLVVGPAALLH |
Ga0307292_101108022 | 3300028811 | Soil | MDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVLVVGPAALLHPR |
Ga0307302_100140373 | 3300028814 | Soil | VDQLGPNALGETLEPGRVADCYLGLLLPPGPAGEPEAGTVLIVAP |
Ga0307302_101307592 | 3300028814 | Soil | MRAVDQLGPNALGKTLEPGRVVDCYLGLLLPPGPAGEPEAGTVLAVACR |
Ga0307302_105107541 | 3300028814 | Soil | VCEIGPNAFGETLKPGGVADCYLGLLVPPGPLGEPEAGTILVV |
Ga0307286_101350561 | 3300028876 | Soil | VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTVLI |
Ga0307286_101839921 | 3300028876 | Soil | MDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVL |
Ga0307286_103231231 | 3300028876 | Soil | VGVDQLGPNALGETLEPGRVADCYLGLLLPPGPAGEPEAGTVL |
Ga0307278_103684961 | 3300028878 | Soil | VDQLGPNALGEVLEPGRVADCYLGLRLPPGPTGEPEAG |
Ga0307300_102207241 | 3300028880 | Soil | VDQLGPNALGETLEAGRVADCYLGLLLPPGPAGEPEAGTVLVVAPAALLHPRVPQPDGSL |
Ga0247826_105361001 | 3300030336 | Soil | VDQLGPNALGEFLEPGRVADCYVGLQLPPGPAGELEAGTVLIVAPAALLHPRVPQP |
Ga0307408_1009790521 | 3300031548 | Rhizosphere | VGTDQFGPNALGETLKPSRVADCYLGLLLPPGPAGEPEAGTILVVAPASLLHPRVPQPD |
Ga0307408_1015373901 | 3300031548 | Rhizosphere | VDQLGPNALGETLEPGRVGDCYLGLLLPPGPAGEPEAGTILIVGPATLL |
Ga0307405_112572591 | 3300031731 | Rhizosphere | MPSRLEPGRVADCYLGLLLPPGPVGELEAGTVLVVAPAALLHPRVPQPDGSLVHA |
Ga0307413_101129571 | 3300031824 | Rhizosphere | VDQLGRNAFGEVLEPGRVADCYLGLLLPPGPAGELEA |
Ga0307413_109651971 | 3300031824 | Rhizosphere | VDQLGPNALGEVLEPGRVGDCYLGLLLPPGPAGEPEAGTIVIVAPATLLRPR |
Ga0307410_120135931 | 3300031852 | Rhizosphere | VDQLGRNALGESLEPGRTNDCYLGLLLPPPPAGELEAG |
Ga0307407_111588311 | 3300031903 | Rhizosphere | VDQLGPNALGEVLEPGRVADCYLGLLLPPGSAGEPEA |
Ga0307412_102792472 | 3300031911 | Rhizosphere | VDQLGPSALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILILAPATLLHPDVPQPTSMSCLRVVATH |
Ga0307412_103698631 | 3300031911 | Rhizosphere | MDQLGSNALGEVLEPGRVTDCYLGLLLPPGPVGEPEAGTVLVVAPA |
Ga0307412_110068612 | 3300031911 | Rhizosphere | VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILIV |
Ga0307409_1009781872 | 3300031995 | Rhizosphere | MDQLGPDALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTVLIVGPAALLHPRVPQPAGSL |
Ga0307409_1011141341 | 3300031995 | Rhizosphere | VDQLGPNALGQVLEPGRVADCYLGLPLPPGPVGESEAGTVLVVAPAALLHPRVPQ |
Ga0307409_1012453241 | 3300031995 | Rhizosphere | VGTDQFGPNALGETLKPSRVADCYLGLLLPPGPAGEPEA |
Ga0307409_1014523431 | 3300031995 | Rhizosphere | MDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVLV |
Ga0307416_1013243552 | 3300032002 | Rhizosphere | VDQLGPNALGETLEPGRVADCYLGLLLPPGPVANPRPG |
Ga0307416_1030709372 | 3300032002 | Rhizosphere | VGTDQFDPNALGETLVPGRVADCYLGLLLPPGPAGEPEAGTVLIVTPAALLHPDVPQ |
Ga0307416_1038163961 | 3300032002 | Rhizosphere | VDQLGPNALGEVLEPGRVADCYLGLLLPPGSTGEP |
Ga0307414_108898061 | 3300032004 | Rhizosphere | VGQLDVNAHGEVLEPGRVADCYLGLLLPPGPAGELEAGTVLIVAPAA |
Ga0307414_122699092 | 3300032004 | Rhizosphere | VDQLGPNARGETLEPGRVADCYLGLLLPPRPAGEPEAGTILILA |
Ga0307411_119345472 | 3300032005 | Rhizosphere | VDQLGRNAFGEVLEPGRVADCYLGLLLPPGPAGELEAGTVLVVA |
Ga0307415_1004570411 | 3300032126 | Rhizosphere | VGTDQFGPNALGETLEPSRVADCYLGLLLPPGPAGEPEAGTVLIVT |
Ga0307415_1007332832 | 3300032126 | Rhizosphere | VDQLGPNALGEVLKPGRVADCYLGLLLPPGPAGEPEAGTVLIVAPAALLHPRV |
Ga0307415_1008131181 | 3300032126 | Rhizosphere | VDQLGPNALGETLEPSRVGDCFLGLLLPPGPVGEPEAGTV |
Ga0307415_1008819313 | 3300032126 | Rhizosphere | MDRLGRNALGEVLEPGRVADCYLGLLLPPGPAGEP |
Ga0307415_1017927841 | 3300032126 | Rhizosphere | MQAVEQFGPNALGETLEPGRVTGCYLGLLLPPGPAGEPEAGTILIVAPAALLHPGVPQPAGNLGL |
Ga0247830_111535031 | 3300033551 | Soil | VDQPGPNALGEVLEPGRVADCYLGLLLPPGPAGELESGTVLILAPAVLLHPQVPQPEGSLVYE |
Ga0247830_114770862 | 3300033551 | Soil | VDQLGPNALGEVLEPGRVAECYLGLLLPPGPVGEPEAGTVLI |
Ga0364945_0140452_546_722 | 3300034115 | Sediment | MDQLGPNALGEVLEPGRVTDCYLGLLLPPGPAGEPEAGTILVVAPVGLLHPRVPQPDGS |
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