NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F083251

Metagenome Family F083251

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083251
Family Type Metagenome
Number of Sequences 113
Average Sequence Length 45 residues
Representative Sequence MKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Number of Associated Samples 78
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 7.96 %
% of genes near scaffold ends (potentially truncated) 51.33 %
% of genes from short scaffolds (< 2000 bps) 87.61 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (68.142 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(41.593 % of family members)
Environment Ontology (ENVO) Unclassified
(92.035 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.150 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60
1DelMOSum2011_100197078
2DelMOWin2010_100760092
3JGI24006J15134_100405616
4JGI24006J15134_102495671
5JGI24004J15324_100628222
6JGI24005J15628_101760672
7KVRMV2_1004157345
8Ga0068511_10627791
9Ga0075466_11790261
10Ga0075441_102159714
11Ga0098038_10740763
12Ga0098038_11037682
13Ga0098038_11057175
14Ga0098038_11563081
15Ga0098038_11699662
16Ga0098038_12758062
17Ga0098037_11480862
18Ga0098037_11701031
19Ga0098037_11900883
20Ga0098037_12330132
21Ga0098037_12699931
22Ga0098035_12198972
23Ga0098042_11506551
24Ga0098055_11883761
25Ga0098055_12486391
26Ga0098055_12674823
27Ga0098055_13580331
28Ga0070750_101572944
29Ga0070746_103197241
30Ga0070746_103686762
31Ga0070748_11540101
32Ga0070748_11549861
33Ga0098060_10523141
34Ga0098060_11417492
35Ga0098060_11527781
36Ga0098060_11601351
37Ga0098060_12169981
38Ga0098041_11523761
39Ga0098041_11904071
40Ga0098036_11392763
41Ga0075444_104003941
42Ga0070747_11283851
43Ga0070747_12925891
44Ga0099847_10192214
45Ga0110931_11385271
46Ga0114910_10922383
47Ga0102816_11662324
48Ga0102960_11863631
49Ga0115566_102520561
50Ga0114903_10210492
51Ga0115570_104943242
52Ga0114900_10157101
53Ga0115012_110365723
54Ga0098043_10260975
55Ga0114934_102273132
56Ga0160422_103281991
57Ga0163110_111010193
58Ga0163109_114472282
59Ga0181398_11497871
60Ga0181419_10445541
61Ga0181416_10204675
62Ga0181416_10243991
63Ga0181415_10350724
64Ga0181415_11070653
65Ga0181426_10864171
66Ga0181428_11372161
67Ga0181421_11596561
68Ga0181402_11629401
69Ga0181397_10978321
70Ga0181393_10295514
71Ga0181393_10594332
72Ga0181405_10073363
73Ga0187219_11940252
74Ga0181411_10237106
75Ga0181408_11165711
76Ga0181422_11423041
77Ga0181413_12051261
78Ga0187220_10179926
79Ga0187220_10282345
80Ga0181425_12768112
81Ga0181423_10557171
82Ga0206125_1000839915
83Ga0206125_101574781
84Ga0211528_103859411
85Ga0213862_100206115
86Ga0222715_102643121
87Ga0212023_10426791
88Ga0233429_12745761
89Ga0208157_10905661
90Ga0208157_11341391
91Ga0208669_10030277
92Ga0208669_10039551
93Ga0208669_10368831
94Ga0208158_11139551
95Ga0208158_11230232
96Ga0208919_10731965
97Ga0208919_12408311
98Ga0209645_10649505
99Ga0209337_10286772
100Ga0209337_11368291
101Ga0209337_11915231
102Ga0208029_10128721
103Ga0208180_10116349
104Ga0208450_10226531
105Ga0208767_11114194
106Ga0209404_103333463
107Ga0209404_109158091
108Ga0307985_104120342
109Ga0307984_11148861
110Ga0307984_11472661
111Ga0315322_100407218
112Ga0315330_100077133
113Ga0315315_101834781
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 71.74%    β-sheet: 0.00%    Coil/Unstructured: 28.26%
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Position

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Variant

51015202530354045MKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTKSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
31.9%68.1%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Deep Ocean
Marine Water
Surface Seawater
Seawater
Seawater
Aqueous
Seawater
Seawater
Estuarine
Marine
Marine
Estuarine Water
Pelagic Marine
Seawater
Marine
Marine Sediment
Seawater
Deep Subsurface
Pond Water
41.6%5.3%9.7%20.4%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1001970783300000115MarineMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
DelMOWin2010_1007600923300000117MarineMKELNKINTIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
JGI24006J15134_1004056163300001450MarineMDNISMKELNKTNKIKFYTYKKLLYILINLNLLTYNQKNSILSKYYDKLNK*
JGI24006J15134_1024956713300001450MarineMKDLNKINTIKFYTYKNILYILINLKLLTHNKKNQIL
JGI24004J15324_1006282223300001472MarineMNELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
JGI24005J15628_1017606723300001589MarineMDNINMKDLNKINTIKFYTYKNILYILINLKLLTHNKKNQILSKYYDNLNK*
KVRMV2_10041573453300002231Marine SedimentSIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0068511_106277913300005057Marine WaterMKNLNKINSIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0075466_117902613300006029AqueousMKELNKTNKIKFYTYKKLLYILIHLKLLTYNQKNSILSKYYDNLTK*
Ga0075441_1021597143300006164MarineMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDKLNK*
Ga0098038_107407633300006735MarineVLDNINMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098038_110376823300006735MarineVLDNINMKELNKINTIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098038_110571753300006735MarineMKELNKINTIKFYTYKKLLYILINLKLLTPNQKNSILSKYYDNLTNN*
Ga0098038_115630813300006735MarineMKELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098038_116996623300006735MarineLDNISMKELTTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098038_127580623300006735MarineMKNLNKLNSIKFYTYKKLLYILINLKLLTYNQKNS
Ga0098037_114808623300006737MarineMLDNINMKELNKINTIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098037_117010313300006737MarineMKELTTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098037_119008833300006737MarineVLDNINMKELNKTNKIKFYTYKKLLYILIHLKLLTYNQKNSILSKYYDNLTK*
Ga0098037_123301323300006737MarineVLDNINMKELNKINTIKFYTYKKLLYILINLKLLTYNQK
Ga0098037_126999313300006737MarineLDNINMKELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098035_121989723300006738MarineLDNNNMKDLNKTNTIKFYTYKKLLYILINLKLLTSNQKNNILSLYYDNLTK*
Ga0098042_115065513300006749MarineKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098055_118837613300006793MarineMKELNTTNKIKFYTYKKLLYILIHLKLLTYNQKNSILSKYYDKLNK*
Ga0098055_124863913300006793MarineMKELTTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTNN*
Ga0098055_126748233300006793MarineLNKINTIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTNN*
Ga0098055_135803313300006793MarineMKELNTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLNK*
Ga0070750_1015729443300006916AqueousMKNLNKINSIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*N*
Ga0070746_1031972413300006919AqueousNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0070746_1036867623300006919AqueousMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*N*
Ga0070748_115401013300006920AqueousNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0070748_115498613300006920AqueousNKIKFYTYKKLLYILIHLKLLTYNQKNSILSKYYDNLTK*
Ga0098060_105231413300006921MarineTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098060_114174923300006921MarineMKELNKINTIKFYTYKKLLYILINLKLLTYNQKNSIL
Ga0098060_115277813300006921MarineIVLDNINMKELNTTNKIKFYTYKKLLYILIHLKLLTYNQKNSILSKYYDKLNK*
Ga0098060_116013513300006921MarineKELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098060_121699813300006921MarineDNINMKELNKINTIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098041_115237613300006928MarineIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTNN*
Ga0098041_119040713300006928MarineTTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0098036_113927633300006929MarineMNELNKINKLKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTNN*
Ga0075444_1040039413300006947MarineMKELNKLNTIKFYTYKKLLYILIKLNLLTYNNKNQILSKYYDELNK*
Ga0070747_112838513300007276AqueousKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0070747_129258913300007276AqueousIKFYTYKKLLYILIHLKLLTYNQKNSILSKYYDNLTK*
Ga0099847_101922143300007540AqueousMKELNTKNKIKFYTYKKLLYILIHLKLLTYNQKNSILSKYYDNLTK*
Ga0110931_113852713300007963MarineNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0114910_109223833300008220Deep OceanNKTNKIKFYTYKKLLYILIHLKLLTYNQKNSILSKYYDNLTK*
Ga0102816_116623243300008999EstuarineKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTNN*
Ga0102960_118636313300009000Pond WaterFAKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0115566_1025205613300009071Pelagic MarineNTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0114903_102104923300009412Deep OceanMKDLNKINTIKFYTYKQLLYILINLKLLTYNQKNSILSKYYDNLTNN*
Ga0115570_1049432423300009496Pelagic MarineMKELNKTNKIKFYTYKKLLYILIHLKLLTYNQKNSI
Ga0114900_101571013300009602Deep OceanMKELNTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTN*
Ga0115012_1103657233300009790MarineLKFYTYKKLLYILINLKLLTYNQKNSILSKYYDKLTK*
Ga0098043_102609753300010148MarineMKDLNKINTIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0114934_1022731323300011013Deep SubsurfaceMKNLNKINSIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLIK*
Ga0160422_1032819913300012919SeawaterMSMKELTTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0163110_1110101933300012928Surface SeawaterVLDNINMKQLNKINTIKFYTYKKLLYILINLKLLTYNQK
Ga0163109_1144722823300012936Surface SeawaterMKDLDKINKIKFYTYKQLLYILINLKLLTYNQKNSILSKYYDNLTK*
Ga0181398_114978713300017725SeawaterTNVIQIVLDNISMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0181419_104455413300017728SeawaterNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0181416_102046753300017731SeawaterMKELNTTNKIKFYTYKKLLYILIHLKLLTYNQKNSILSKYYDNLTK
Ga0181416_102439913300017731SeawaterMKELNTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNL
Ga0181415_103507243300017732SeawaterMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLKK
Ga0181415_110706533300017732SeawaterMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDKLNK
Ga0181426_108641713300017733SeawaterMKELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTKXN
Ga0181428_113721613300017738SeawaterMKELNTKNKIKFYTYKKLLYILINLKLLTYNQKNSI
Ga0181421_115965613300017741SeawaterMKELNTKNKIKFYTYKQLLYILINLKLLTYNQKNS
Ga0181402_116294013300017743SeawaterNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLNK
Ga0181397_109783213300017744SeawaterKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0181393_102955143300017748SeawaterMKELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYY
Ga0181393_105943323300017748SeawaterMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTKXN
Ga0181405_100733633300017750SeawaterMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDN
Ga0187219_119402523300017751SeawaterMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNS
Ga0181411_102371063300017755SeawaterMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSIL
Ga0181408_111657113300017760SeawaterMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDKLN
Ga0181422_114230413300017762SeawaterNTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0181413_120512613300017765SeawaterSMKELNKTNKIKFYTYKKILYILINLKLLTYNQKNLILSKYYDNLTK
Ga0187220_101799263300017768SeawaterMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSK
Ga0187220_102823453300017768SeawaterNINMKELNTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0181425_127681123300017771SeawaterMKELNKINKIKFYTYKKLLYILINLKLLTYNQRNSILSKY
Ga0181423_105571713300017781SeawaterMKELNTKNKIKFYTYKKLLYILINLKLLTYNQKNSILAKYYDNLTK
Ga0206125_10008399153300020165SeawaterMKELNTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0206125_1015747813300020165SeawaterKELNTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0211528_1038594113300020417MarineKNLNKINSIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLINKQ
Ga0213862_1002061153300021347SeawaterMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0222715_1026431213300021960Estuarine WaterNMKELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0212023_104267913300022061AqueousSMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
(restricted) Ga0233429_127457613300022902SeawaterMDNISMKELNKTNKIKFYTYKKLLYILINLNLLTYNQKNSILSKYYDKLNK
Ga0208157_109056613300025086MarineMKELTTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0208157_113413913300025086MarineMLDNINMKELNKINTIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0208669_100302773300025099MarineMKELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0208669_100395513300025099MarineMKELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILS
Ga0208669_103688313300025099MarineDNINMKELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0208158_111395513300025110MarineKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTNN
Ga0208158_112302323300025110MarineMKELTTKNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYY
Ga0208919_107319653300025128MarineMNELNKINKLKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTNN
Ga0208919_124083113300025128MarineMKELNKINTIKFYTYKKLLYILINLKLLTYNQKNLILSKYYDNLTK
Ga0209645_106495053300025151MarineMKDLNKINTIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0209337_102867723300025168MarineMKELNKTNKIKFYTYKKLLYILINLNLLTYNQKNSILSKYYDKLTK
Ga0209337_113682913300025168MarineMDNINMKDLNKINTIKFYTYKQLLYILINLKLLTHNKKNQILSKYYDNLNK
Ga0209337_119152313300025168MarineMDNINMKELNKTNKIKFYTYKKLLYILINLNLLTYNQKNSILSKYYDKLNK
Ga0208029_101287213300025264Deep OceanMKDLNKINTIKFYTYKQLLYILINLKLLTYNQKNSILSKYYDNLTNN
Ga0208180_101163493300025277Deep OceanMKELNKTNKIKFYTYKKLLYILIHLKLLTYNQKNSILSKYYDNLTK
Ga0208450_102265313300025301Deep OceanMNELNTTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
Ga0208767_111141943300025769AqueousMKNLNKINSIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTKXN
Ga0209404_1033334633300027906MarineMNELNKINKLKFYTYKKLLYILINLKLLTYNQKNSILSKYYDKLNK
Ga0209404_1091580913300027906MarineIRTKLDNINMKDLNKINTIKFYTYKQLLYILIKLNIITYNQKNSILSKYYDNLTNN
Ga0307985_1041203423300031629MarineMDNISMKKLNKLNTIKFYTYKKLLYILINLKLLTYNNKNQILSKYYDKLNK
Ga0307984_111488613300031658MarineMKELNKLNTIKFHTYKKLLYILIHLQLLTYNNKNKILSKYYDKLN
Ga0307984_114726613300031658MarineISMKELNKINTIKFYTYKKLLYILINLNLLTYNNKNQILSKYYDKLNK
Ga0315322_1004072183300031766SeawaterMKDLNKINKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTNN
Ga0315330_1000771333300032047SeawaterMKELNKINTIKFYTYKQLLYILIKLNIITYNQKNSILSKYYDNLTNN
Ga0315315_1018347813300032073SeawaterMKELNKINTIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDN


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