NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F083232

Metagenome / Metatranscriptome Family F083232

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083232
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 35 residues
Representative Sequence MGFDPNRPYKANKTDYLNIIAAFLLTVIVVIWALN
Number of Associated Samples 99
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.65 %
% of genes near scaffold ends (potentially truncated) 22.12 %
% of genes from short scaffolds (< 2000 bps) 49.56 %
Associated GOLD sequencing projects 97
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(23.894 % of family members)
Environment Ontology (ENVO) Unclassified
(53.097 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(93.805 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44
1Ocean1-_00036540
2DelMOSum2010_102481022
3DelMOSpr2010_100005209
4LPaug08P2610mDRAFT_10130532
5BB_Man_B_Liq_inBBDRAFT_100000641
6BB_Man_A_Liq_inBBDRAFT_10000173
7JGI20158J14315_100653383
8GOS2252_10058514
9GOS2244_10015472
10GOS2249_10197122
11GOS2229_10588895
12GOS2242_10299543
13GOS2233_10987581
14GOS2246_101602553
15GOScombined01_1012231212
16GOScombined01_1016850583
17GOScombined01_1070780286
18KVWGV2_109069792
19Ga0074648_10304781
20Ga0066861_100110064
21Ga0066861_100234925
22Ga0066861_100426792
23Ga0066861_102163132
24Ga0066835_102096811
25Ga0078893_1000029816
26Ga0078893_102989045
27Ga0008649_1000023839
28Ga0066371_1000030914
29Ga0075462_100121394
30Ga0075462_100620613
31Ga0066836_102836212
32Ga0066836_109795521
33Ga0068487_12006372
34Ga0068475_13518191
35Ga0068486_11330995
36Ga0099953_10665681
37Ga0075514_11817212
38Ga0101444_10304018
39Ga0068494_1126402
40Ga0075475_100292854
41Ga0101670_10374202
42Ga0102951_10150543
43Ga0105737_10012191
44Ga0075480_100501192
45Ga0117901_10403785
46Ga0118729_10411133
47Ga0118730_10703006
48Ga0115011_101222342
49Ga0160422_106641032
50Ga0163111_112727822
51Ga0171646_10623044
52Ga0181395_100000234
53Ga0181565_100978824
54Ga0181565_101975113
55Ga0181584_100937014
56Ga0181584_102653631
57Ga0181584_103562312
58Ga0181607_100062404
59Ga0181577_100542035
60Ga0181583_104642043
61Ga0181580_104332481
62Ga0181571_100874073
63Ga0181581_107018912
64Ga0181553_101300354
65Ga0181567_101377741
66Ga0181566_101017423
67Ga0181568_111481431
68Ga0182073_13144272
69Ga0194029_10008825
70Ga0194024_100054610
71Ga0181575_100164722
72Ga0211492_100009022
73Ga0211654_10003101
74Ga0211586_100009029
75Ga0211588_10505741
76Ga0211648_10094443
77Ga0211495_10882711
78Ga0211509_10091622
79Ga0211650_10012221
80Ga0211517_10196103
81Ga0211510_10043623
82Ga0211613_10056583
83Ga0211647_100452364
84Ga0211652_100115226
85Ga0211705_100075362
86Ga0211659_100187912
87Ga0211557_100428394
88Ga0211554_1000049233
89Ga0211642_104313132
90Ga0211664_101547512
91Ga0211514_100202635
92Ga0211486_104134051
93Ga0211640_105451432
94Ga0211713_1000136419
95Ga0211577_1000170320
96Ga0211577_108873821
97Ga0211547_105382672
98Ga0213860_102572782
99Ga0213866_105450092
100Ga0222717_100094939
101Ga0222717_100163415
102Ga0222717_100591392
103Ga0222718_100127006
104Ga0224906_100070015
105Ga0255780_101253211
106Ga0228656_10123973
107Ga0244777_100276316
108Ga0208261_11506832
109Ga0208130_10719423
110Ga0208641_10573563
111Ga0208277_100187117
112Ga0209035_101185983
113Ga0257106_10107013
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 34.92%    β-sheet: 0.00%    Coil/Unstructured: 65.08%
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5101520253035MGFDPNRPYKANKTDYLNIIAAFLLTVIVVIWALNExtracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Freshwater
Marine
Marine
Environmental And Host-Associated
Marine
Surface Seawater
Seawater
Marine
Marine
Aqueous
Seawater
Marine Surface Water
Estuary Water
Marine
Estuarine
Salt Marsh
Marine
Estuarine Water
Pelagic Marine
Marine
Marine Sediment
Seawater
Volcanic Co2 Seep
Water
Bioluminescent Bay
Saline Water And Sediment
Bioluminescent Bay
13.3%3.5%3.5%4.4%8.0%15.9%23.9%3.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ocean1-_000365402166559013Environmental And Host-AssociatedMGFDPNRPYKANKTDYLNIALCIVLAVIAIIWALN
DelMOSum2010_1024810223300000101MarineMGFDPNRPYRANKTDYFNIIFSIVLAVVAIIWALS*
DelMOSpr2010_1000052093300000116MarineMGFDPNRPYKANRTDYVNIALSIVLAVIAIIWALS*
LPaug08P2610mDRAFT_101305323300000159MarineMGFDPNKPYKANRTDYFNIILCIALAVIAIIWALN*
BB_Man_B_Liq_inBBDRAFT_1000006413300000401Bioluminescent BayMGFDPNRPYKANKTDYINIVLAVALTAAVVIWALN*
BB_Man_A_Liq_inBBDRAFT_100001733300000422Bioluminescent BayMGFDPNRPYKANKTDYINIILAVALTAAVVIWALN*
JGI20158J14315_1006533833300001355Pelagic MarineMGFDPNRPYKANKTDYFNIVFCIILAAVAIIWALN*
GOS2252_100585143300001937MarineMGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALN*
GOS2244_100154723300001946MarineMGFDPNKPYKANKTDYLNIVAALLLTIIVIIWALN*
GOS2249_101971223300001951MarineMGFNPNREYKANKTDYVNIVAALILTVAVLIWALN*
GOS2229_105888953300001963MarineMGFDPNRPYKANRTDYVNIALSIVLAVIAIIWALSKR
GOS2242_102995433300001967MarineMGFDPNRPYKANKADYINIIFAFILTTIVVIWALN*
GOS2233_109875813300001969MarineMGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALRKD
GOS2246_1016025533300001974MarineMGFDPNRPYKANKTDYVNIALCIVLAVVAIIWALN*
GOScombined01_10122312123300002040MarineMGFDPNRPYKANRTDYVNIALSIVLAIIAIIWALS*
GOScombined01_10168505833300002040MarineMGFDPNRPYKANKTDYINIIFAFLLTAIVVIWALS*
GOScombined01_10707802863300002040MarineMGFDPNKPYKANKTDYLNIVAALFLTIIVVIWALN*
KVWGV2_1090697923300002242Marine SedimentMGFDPNRPYKANKYDYANIIFCFLLAIFAIYWALN*
Ga0074648_103047813300005512Saline Water And SedimentMGFDPNRPYKANKTDYINIIFAFILTAIVVIWALS*
Ga0066861_1001100643300005522MarineMGFDPNKPYKANKTDYLNIISALLLTIIVVIWALN*
Ga0066861_1002349253300005522MarineMGFDPNRPYKANKTDYLNIIAAFLLTVIVVIWALN*
Ga0066861_1004267923300005522MarineMGFDPNKPYKANKTDYLNIVAALLLTIIVVIWALN*
Ga0066861_1021631323300005522MarineMGFNPNREYKANKTDYVNIVAALILTIAVLIWALN*
Ga0066835_1020968113300005606MarineMGFDPNKPYKANKTDYINISAALLLTIIVIIWALRKDLR
Ga0078893_10000298163300005837Marine Surface WaterMGFDPNRPYKANKTDYLNIALCIVLAVIAIIWALN*
Ga0078893_1029890453300005837Marine Surface WaterMGFDPNRPYKANKADYFNIALSVTLALIAIIWALN*
Ga0008649_10000238393300005838MarineMGFDPNRPYKANRTDYFNIIFSIILAVVAIIWALS*
Ga0066371_10000309143300006024MarineMGFDPNKPYKANKTDYINIIIAFILTAIVVIWALS*
Ga0075462_1001213943300006027AqueousMGFDPNRPYKANKTDYLNIIFAIALTAAVVIWALS*
Ga0075462_1006206133300006027AqueousMGFDPNRPYKANKVDYINIIAALILTVVVIVWAIS*
Ga0066836_1028362123300006166MarineMGFDPNKPYKANKTDYLNIISALLLTIIVVIWALNKRFAMD
Ga0066836_1097955213300006166MarineNVNMGFDPNRPYKANKYDYINIVFCIILAMLAIYWALN*
Ga0068487_120063723300006315MarineMGFDPNRPYKANKYDYANIIFCFLLAVFAIYWALN*
Ga0068475_135181913300006318MarineMGFDPNRPYKANKYDYANIIFCFLLAVFAIYWAQIKRPT
Ga0068486_113309953300006329MarineMGFDPNRPYKANKYDYANIIFCFLLAVFAIYWALS*
Ga0099953_106656813300006351MarineGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALS*
Ga0075514_118172123300006403AqueousMGFDPNRPYKANRTDYVNLTLSIVLAVIAIIWALS*
Ga0101444_103040183300006620Marine Surface WaterMGFDPNKPYKANKTDYLNIIAALILTVIVIIWALN*
Ga0068494_11264023300006842MarineMGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALS*
Ga0075475_1002928543300006874AqueousMGFDPNRPYKANKIDYLNIIGALLLIVIVITWALS*
Ga0101670_103742023300007144Volcanic Co2 SeepMGFDPNKPYKANKTDYLNIISALLLTITVVIWALN*
Ga0102951_101505433300007725WaterMGFNPNREYKANKTDYVNIVAALILTIAVVIWALS*
Ga0105737_100121913300007862Estuary WaterMGFDPNRPYKANSTDYFNIIFSIILAVVAIIWALS*
Ga0075480_1005011923300008012AqueousMGFDPNRPYKANKTDYVNIILAIALTAAVFIWAIS*
Ga0117901_104037853300009103MarineMGFDPNRKYEANKIDYLNIVLAFLLALIAIIWAIN*
Ga0118729_104111333300009130MarineMGFDPNRKYEPNKIDYLNIVLAFLLALIAIIWAIN*
Ga0118730_107030063300009132MarineVYMGFDPNRKYEANKIDYLNIVLALLLALIAIIWAIN*
Ga0115011_1012223423300009593MarineMGFNPNREYKANKTDYVNIVAALILTTAVLIWALN*
Ga0160422_1066410323300012919SeawaterMGFNPNREYKANKTDYVNIVSALILTVAVLIWALN*
Ga0163111_1127278223300012954Surface SeawaterMGFDPNKPYKANKTDYLNIIAALLLTLVVVIWALN*
Ga0171646_106230443300013116MarineVYMGFDPNRKYEANKIDYLNIVLAFLLALIAIIWAIN*
Ga0181395_1000002343300017779SeawaterMGFDPNKPYKANNTDYINIIFAFILTAIVVIWALS
Ga0181565_1009788243300017818Salt MarshMGFDPNKPYKANKTDYLNIVAALLLTTIVLIWALN
Ga0181565_1019751133300017818Salt MarshMGFDPNKPYKANKTDYLNIVAALLLTIIVVIWALN
Ga0181584_1009370143300017949Salt MarshMGFDPNRPYKANKTDYVNIILAIALTTAVVIWAIS
Ga0181584_1026536313300017949Salt MarshMGFDPNRPYKANKTDYLNIILAVALTAAVVIWALN
Ga0181584_1035623123300017949Salt MarshMGFDPNRPYKANKTDYINIILAVALTAAVVIWALN
Ga0181607_1000624043300017950Salt MarshMGFNPNREYKANKTDYVNIVAALILTIAVLIWALN
Ga0181577_1005420353300017951Salt MarshMGFDPNRPYKANKTDYVNIILAIALTAAVVIWAIS
Ga0181583_1046420433300017952Salt MarshNVCMGFDPNKPYKANKTDYLNIVAALFLTIIVVIWALN
Ga0181580_1043324813300017956Salt MarshVCMGFDPNKPYKANKTDYLNIISALLLTIIVVIWALN
Ga0181571_1008740733300017957Salt MarshMGFDPNKPYKANKTDYLNIVAALLLTTIVIIWALN
Ga0181581_1070189123300017962Salt MarshMGFDPNRPYKANKTDYVNIILAVALTAAVVIWALN
Ga0181553_1013003543300018416Salt MarshMGFDTNKPYKANKTDYLNIVAALLLTTIVLIWALN
Ga0181567_1013777413300018418Salt MarshMGFDPNRPYKANKIDYLNIIGALLLIVIVITWALS
Ga0181566_1010174233300018426Salt MarshMGFDPNRPYKANKTDYVNIILAITLTAAVVIWAIS
Ga0181568_1114814313300018428Salt MarshMGFDPNRPYKANKIDYLNIIGALLLIIIVITWALS
Ga0182073_131442723300019274Salt MarshMGFDPNRPYKANKTDYLNIIFAIALTAAVVIWALS
Ga0194029_100088253300019751FreshwaterMGFDPNRPYKANRTDYVNIALSIVLAVIAIIWALS
Ga0194024_1000546103300019765FreshwaterMGFDPNRPYKANKTDYFNIIFAFILTAIVVIWALS
Ga0181575_1001647223300020055Salt MarshMGFDPNRPYKANKTDYINIIFAFILTAIVVIWALN
Ga0211492_1000090223300020238MarineMGFDPNRPYKANKADYFNIALSVTLALIAIIWALN
Ga0211654_100031013300020247MarineMGFDPNRPYKANKTDYLNIIAAFLLTVIVVIWALN
Ga0211586_1000090293300020255MarineMGFDPNRKYEANKIDYLNIVLAFLLALIAIIWAIN
Ga0211588_105057413300020260MarineMGFDPNRPYKANKYDYANIIFCFLLAVFAIYWALN
Ga0211648_100944433300020267MarineMGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALN
Ga0211495_108827113300020268MarineIMGFDPNRPYKANKYDYANIIFCFLLALFAIYWALN
Ga0211509_100916223300020276MarineMGFDPNKPYKANKTDYINIIFAFILTAIVVIWALS
Ga0211650_100122213300020301MarineVCMGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALN
Ga0211517_101961033300020319MarineMGFDPNKPYKANKTDYLNIIAALILTVIVIIWALN
Ga0211510_100436233300020336MarineMGFNPNKEYRANKTDYINIIFAVILTVAVVIWALN
Ga0211613_100565833300020353MarineMGFNPNRKYDANKIDYLNIVLAFLLALIAIIWAIN
Ga0211647_1004523643300020377MarineMGFDPNKPYKANKTDYLNIVAALLLTIIVIIWALN
Ga0211652_1001152263300020379MarineMGFDPNRPYKANKADYINIIFAFILTTIVVIWALN
Ga0211705_1000753623300020395MarineMGFDPNRPYKANKTDYLNIVAALILTIIVVIWALN
Ga0211659_1001879123300020404MarineMGFNPNREYKANKTDYVNIVAALILTVAVLIWALN
Ga0211557_1004283943300020418MarineMGFDPNRPYKANKTDYINIIFAFILTAVVVIWALS
Ga0211554_10000492333300020431MarineMGFDPNRPYRANKTDYFNIIFSIVLAVVAIIWALS
Ga0211642_1043131323300020449MarineNMGFDPNRPYKANKYDYINIVFCIILAMLAIYWALN
Ga0211664_1015475123300020455MarineMGFNPNKPYKANKTDYLNIIAALLLTIIVVIWALN
Ga0211514_1002026353300020459MarineMGFDPNKPYKANKTDYINIIFAFILTAIVVIWALN
Ga0211486_1041340513300020460MarineMGFDPNRPYKANKYDYINISICIILAILAISWALN
Ga0211640_1054514323300020465MarineVVMGFDPNKPYKANKTDYINIIFAFILTTIVVIWALS
Ga0211713_10001364193300020467MarineMGFNPNRKYDANKTDYLNIVLAFLLTLIAIIWAIN
Ga0211577_10001703203300020469MarineMGFDPNRPYKANRTDYFNIIFSIILAVVAIIWALS
Ga0211577_1088738213300020469MarineNVVMGFDPNRPYKANKTDYFNIVFSIILAAVAIIWALN
Ga0211547_1053826723300020474MarineMGFNPNKEYKANKTDYINIIIAVILTVAVVIWALN
Ga0213860_1025727823300021368SeawaterMGFDPNKPYKANKTDYINIVLAVALTAAVVIWALN
Ga0213866_1054500923300021425SeawaterVVMGFDPNRPYKANKTDYINIIFAFILTAIVVIWALS
Ga0222717_1000949393300021957Estuarine WaterMGFNPNREYKANKTDYVNIVAALILTIAVVIWALS
Ga0222717_1001634153300021957Estuarine WaterMGFDPNRPYKANKTDYINIIFSFILTAIVVIWALS
Ga0222717_1005913923300021957Estuarine WaterMGFDPNRPYKANKVDYINIIAALILTVVVIVWAIS
Ga0222718_1001270063300021958Estuarine WaterMGFNPNREYKANKTDYVNIVAALILTIAVVIWALN
Ga0224906_1000700153300022074SeawaterMGFNPNKEYKANKTDYVNILSALILTIAVVIWALN
Ga0255780_1012532113300022935Salt MarshVYMGFDPNRPYKANKTDYVNIILAISLTAAVVIWAIS
Ga0228656_101239733300024322SeawaterMGFDPNRPYKANKTDYLNIALCIVLAVIGIIWALN
Ga0244777_1002763163300024343EstuarineMGFDPNRPYKANSTDYFNIIFSIILAVVAIIWALS
Ga0208261_115068323300026076MarineMGFDPNRPYKANKTDYINIIFAFILIAIVVIWALS
Ga0208130_107194233300026258MarineMGFDPNKPYKANKTDYLNIILALLLTIIVVIWALN
Ga0208641_105735633300026268MarineMGFDPNRPYKANKFDYINIVFCFILALLAIFWALN
Ga0208277_1001871173300026292MarineMGFDPNKPYKANKTDYINIIIAFILTAIVVIWALS
Ga0209035_1011859833300027827MarineMGFNPNKPYKANKADYFNIALSVTLALIAIIWALN
Ga0257106_101070133300028194MarineMGFDPNKPYKANRTDYFNIILCIALAVIAIIWALN


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