Basic Information | |
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Family ID | F083232 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 113 |
Average Sequence Length | 35 residues |
Representative Sequence | MGFDPNRPYKANKTDYLNIIAAFLLTVIVVIWALN |
Number of Associated Samples | 99 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 2.65 % |
% of genes near scaffold ends (potentially truncated) | 22.12 % |
% of genes from short scaffolds (< 2000 bps) | 49.56 % |
Associated GOLD sequencing projects | 97 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.48 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (23.894 % of family members) |
Environment Ontology (ENVO) | Unclassified (53.097 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (93.805 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 34.92% β-sheet: 0.00% Coil/Unstructured: 65.08% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.48 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Marine Marine Environmental And Host-Associated Marine Surface Seawater Seawater Marine Marine Aqueous Seawater Marine Surface Water Estuary Water Marine Estuarine Salt Marsh Marine Estuarine Water Pelagic Marine Marine Marine Sediment Seawater Volcanic Co2 Seep Water Bioluminescent Bay Saline Water And Sediment Bioluminescent Bay |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ocean1-_00036540 | 2166559013 | Environmental And Host-Associated | MGFDPNRPYKANKTDYLNIALCIVLAVIAIIWALN |
DelMOSum2010_102481022 | 3300000101 | Marine | MGFDPNRPYRANKTDYFNIIFSIVLAVVAIIWALS* |
DelMOSpr2010_100005209 | 3300000116 | Marine | MGFDPNRPYKANRTDYVNIALSIVLAVIAIIWALS* |
LPaug08P2610mDRAFT_10130532 | 3300000159 | Marine | MGFDPNKPYKANRTDYFNIILCIALAVIAIIWALN* |
BB_Man_B_Liq_inBBDRAFT_100000641 | 3300000401 | Bioluminescent Bay | MGFDPNRPYKANKTDYINIVLAVALTAAVVIWALN* |
BB_Man_A_Liq_inBBDRAFT_10000173 | 3300000422 | Bioluminescent Bay | MGFDPNRPYKANKTDYINIILAVALTAAVVIWALN* |
JGI20158J14315_100653383 | 3300001355 | Pelagic Marine | MGFDPNRPYKANKTDYFNIVFCIILAAVAIIWALN* |
GOS2252_10058514 | 3300001937 | Marine | MGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALN* |
GOS2244_10015472 | 3300001946 | Marine | MGFDPNKPYKANKTDYLNIVAALLLTIIVIIWALN* |
GOS2249_10197122 | 3300001951 | Marine | MGFNPNREYKANKTDYVNIVAALILTVAVLIWALN* |
GOS2229_10588895 | 3300001963 | Marine | MGFDPNRPYKANRTDYVNIALSIVLAVIAIIWALSKR |
GOS2242_10299543 | 3300001967 | Marine | MGFDPNRPYKANKADYINIIFAFILTTIVVIWALN* |
GOS2233_10987581 | 3300001969 | Marine | MGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALRKD |
GOS2246_101602553 | 3300001974 | Marine | MGFDPNRPYKANKTDYVNIALCIVLAVVAIIWALN* |
GOScombined01_1012231212 | 3300002040 | Marine | MGFDPNRPYKANRTDYVNIALSIVLAIIAIIWALS* |
GOScombined01_1016850583 | 3300002040 | Marine | MGFDPNRPYKANKTDYINIIFAFLLTAIVVIWALS* |
GOScombined01_1070780286 | 3300002040 | Marine | MGFDPNKPYKANKTDYLNIVAALFLTIIVVIWALN* |
KVWGV2_109069792 | 3300002242 | Marine Sediment | MGFDPNRPYKANKYDYANIIFCFLLAIFAIYWALN* |
Ga0074648_10304781 | 3300005512 | Saline Water And Sediment | MGFDPNRPYKANKTDYINIIFAFILTAIVVIWALS* |
Ga0066861_100110064 | 3300005522 | Marine | MGFDPNKPYKANKTDYLNIISALLLTIIVVIWALN* |
Ga0066861_100234925 | 3300005522 | Marine | MGFDPNRPYKANKTDYLNIIAAFLLTVIVVIWALN* |
Ga0066861_100426792 | 3300005522 | Marine | MGFDPNKPYKANKTDYLNIVAALLLTIIVVIWALN* |
Ga0066861_102163132 | 3300005522 | Marine | MGFNPNREYKANKTDYVNIVAALILTIAVLIWALN* |
Ga0066835_102096811 | 3300005606 | Marine | MGFDPNKPYKANKTDYINISAALLLTIIVIIWALRKDLR |
Ga0078893_1000029816 | 3300005837 | Marine Surface Water | MGFDPNRPYKANKTDYLNIALCIVLAVIAIIWALN* |
Ga0078893_102989045 | 3300005837 | Marine Surface Water | MGFDPNRPYKANKADYFNIALSVTLALIAIIWALN* |
Ga0008649_1000023839 | 3300005838 | Marine | MGFDPNRPYKANRTDYFNIIFSIILAVVAIIWALS* |
Ga0066371_1000030914 | 3300006024 | Marine | MGFDPNKPYKANKTDYINIIIAFILTAIVVIWALS* |
Ga0075462_100121394 | 3300006027 | Aqueous | MGFDPNRPYKANKTDYLNIIFAIALTAAVVIWALS* |
Ga0075462_100620613 | 3300006027 | Aqueous | MGFDPNRPYKANKVDYINIIAALILTVVVIVWAIS* |
Ga0066836_102836212 | 3300006166 | Marine | MGFDPNKPYKANKTDYLNIISALLLTIIVVIWALNKRFAMD |
Ga0066836_109795521 | 3300006166 | Marine | NVNMGFDPNRPYKANKYDYINIVFCIILAMLAIYWALN* |
Ga0068487_12006372 | 3300006315 | Marine | MGFDPNRPYKANKYDYANIIFCFLLAVFAIYWALN* |
Ga0068475_13518191 | 3300006318 | Marine | MGFDPNRPYKANKYDYANIIFCFLLAVFAIYWAQIKRPT |
Ga0068486_11330995 | 3300006329 | Marine | MGFDPNRPYKANKYDYANIIFCFLLAVFAIYWALS* |
Ga0099953_10665681 | 3300006351 | Marine | GFDPNKPYKANKTDYLNIIAALLLTIIVVIWALS* |
Ga0075514_11817212 | 3300006403 | Aqueous | MGFDPNRPYKANRTDYVNLTLSIVLAVIAIIWALS* |
Ga0101444_10304018 | 3300006620 | Marine Surface Water | MGFDPNKPYKANKTDYLNIIAALILTVIVIIWALN* |
Ga0068494_1126402 | 3300006842 | Marine | MGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALS* |
Ga0075475_100292854 | 3300006874 | Aqueous | MGFDPNRPYKANKIDYLNIIGALLLIVIVITWALS* |
Ga0101670_10374202 | 3300007144 | Volcanic Co2 Seep | MGFDPNKPYKANKTDYLNIISALLLTITVVIWALN* |
Ga0102951_10150543 | 3300007725 | Water | MGFNPNREYKANKTDYVNIVAALILTIAVVIWALS* |
Ga0105737_10012191 | 3300007862 | Estuary Water | MGFDPNRPYKANSTDYFNIIFSIILAVVAIIWALS* |
Ga0075480_100501192 | 3300008012 | Aqueous | MGFDPNRPYKANKTDYVNIILAIALTAAVFIWAIS* |
Ga0117901_10403785 | 3300009103 | Marine | MGFDPNRKYEANKIDYLNIVLAFLLALIAIIWAIN* |
Ga0118729_10411133 | 3300009130 | Marine | MGFDPNRKYEPNKIDYLNIVLAFLLALIAIIWAIN* |
Ga0118730_10703006 | 3300009132 | Marine | VYMGFDPNRKYEANKIDYLNIVLALLLALIAIIWAIN* |
Ga0115011_101222342 | 3300009593 | Marine | MGFNPNREYKANKTDYVNIVAALILTTAVLIWALN* |
Ga0160422_106641032 | 3300012919 | Seawater | MGFNPNREYKANKTDYVNIVSALILTVAVLIWALN* |
Ga0163111_112727822 | 3300012954 | Surface Seawater | MGFDPNKPYKANKTDYLNIIAALLLTLVVVIWALN* |
Ga0171646_10623044 | 3300013116 | Marine | VYMGFDPNRKYEANKIDYLNIVLAFLLALIAIIWAIN* |
Ga0181395_100000234 | 3300017779 | Seawater | MGFDPNKPYKANNTDYINIIFAFILTAIVVIWALS |
Ga0181565_100978824 | 3300017818 | Salt Marsh | MGFDPNKPYKANKTDYLNIVAALLLTTIVLIWALN |
Ga0181565_101975113 | 3300017818 | Salt Marsh | MGFDPNKPYKANKTDYLNIVAALLLTIIVVIWALN |
Ga0181584_100937014 | 3300017949 | Salt Marsh | MGFDPNRPYKANKTDYVNIILAIALTTAVVIWAIS |
Ga0181584_102653631 | 3300017949 | Salt Marsh | MGFDPNRPYKANKTDYLNIILAVALTAAVVIWALN |
Ga0181584_103562312 | 3300017949 | Salt Marsh | MGFDPNRPYKANKTDYINIILAVALTAAVVIWALN |
Ga0181607_100062404 | 3300017950 | Salt Marsh | MGFNPNREYKANKTDYVNIVAALILTIAVLIWALN |
Ga0181577_100542035 | 3300017951 | Salt Marsh | MGFDPNRPYKANKTDYVNIILAIALTAAVVIWAIS |
Ga0181583_104642043 | 3300017952 | Salt Marsh | NVCMGFDPNKPYKANKTDYLNIVAALFLTIIVVIWALN |
Ga0181580_104332481 | 3300017956 | Salt Marsh | VCMGFDPNKPYKANKTDYLNIISALLLTIIVVIWALN |
Ga0181571_100874073 | 3300017957 | Salt Marsh | MGFDPNKPYKANKTDYLNIVAALLLTTIVIIWALN |
Ga0181581_107018912 | 3300017962 | Salt Marsh | MGFDPNRPYKANKTDYVNIILAVALTAAVVIWALN |
Ga0181553_101300354 | 3300018416 | Salt Marsh | MGFDTNKPYKANKTDYLNIVAALLLTTIVLIWALN |
Ga0181567_101377741 | 3300018418 | Salt Marsh | MGFDPNRPYKANKIDYLNIIGALLLIVIVITWALS |
Ga0181566_101017423 | 3300018426 | Salt Marsh | MGFDPNRPYKANKTDYVNIILAITLTAAVVIWAIS |
Ga0181568_111481431 | 3300018428 | Salt Marsh | MGFDPNRPYKANKIDYLNIIGALLLIIIVITWALS |
Ga0182073_13144272 | 3300019274 | Salt Marsh | MGFDPNRPYKANKTDYLNIIFAIALTAAVVIWALS |
Ga0194029_10008825 | 3300019751 | Freshwater | MGFDPNRPYKANRTDYVNIALSIVLAVIAIIWALS |
Ga0194024_100054610 | 3300019765 | Freshwater | MGFDPNRPYKANKTDYFNIIFAFILTAIVVIWALS |
Ga0181575_100164722 | 3300020055 | Salt Marsh | MGFDPNRPYKANKTDYINIIFAFILTAIVVIWALN |
Ga0211492_100009022 | 3300020238 | Marine | MGFDPNRPYKANKADYFNIALSVTLALIAIIWALN |
Ga0211654_10003101 | 3300020247 | Marine | MGFDPNRPYKANKTDYLNIIAAFLLTVIVVIWALN |
Ga0211586_100009029 | 3300020255 | Marine | MGFDPNRKYEANKIDYLNIVLAFLLALIAIIWAIN |
Ga0211588_10505741 | 3300020260 | Marine | MGFDPNRPYKANKYDYANIIFCFLLAVFAIYWALN |
Ga0211648_10094443 | 3300020267 | Marine | MGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALN |
Ga0211495_10882711 | 3300020268 | Marine | IMGFDPNRPYKANKYDYANIIFCFLLALFAIYWALN |
Ga0211509_10091622 | 3300020276 | Marine | MGFDPNKPYKANKTDYINIIFAFILTAIVVIWALS |
Ga0211650_10012221 | 3300020301 | Marine | VCMGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALN |
Ga0211517_10196103 | 3300020319 | Marine | MGFDPNKPYKANKTDYLNIIAALILTVIVIIWALN |
Ga0211510_10043623 | 3300020336 | Marine | MGFNPNKEYRANKTDYINIIFAVILTVAVVIWALN |
Ga0211613_10056583 | 3300020353 | Marine | MGFNPNRKYDANKIDYLNIVLAFLLALIAIIWAIN |
Ga0211647_100452364 | 3300020377 | Marine | MGFDPNKPYKANKTDYLNIVAALLLTIIVIIWALN |
Ga0211652_100115226 | 3300020379 | Marine | MGFDPNRPYKANKADYINIIFAFILTTIVVIWALN |
Ga0211705_100075362 | 3300020395 | Marine | MGFDPNRPYKANKTDYLNIVAALILTIIVVIWALN |
Ga0211659_100187912 | 3300020404 | Marine | MGFNPNREYKANKTDYVNIVAALILTVAVLIWALN |
Ga0211557_100428394 | 3300020418 | Marine | MGFDPNRPYKANKTDYINIIFAFILTAVVVIWALS |
Ga0211554_1000049233 | 3300020431 | Marine | MGFDPNRPYRANKTDYFNIIFSIVLAVVAIIWALS |
Ga0211642_104313132 | 3300020449 | Marine | NMGFDPNRPYKANKYDYINIVFCIILAMLAIYWALN |
Ga0211664_101547512 | 3300020455 | Marine | MGFNPNKPYKANKTDYLNIIAALLLTIIVVIWALN |
Ga0211514_100202635 | 3300020459 | Marine | MGFDPNKPYKANKTDYINIIFAFILTAIVVIWALN |
Ga0211486_104134051 | 3300020460 | Marine | MGFDPNRPYKANKYDYINISICIILAILAISWALN |
Ga0211640_105451432 | 3300020465 | Marine | VVMGFDPNKPYKANKTDYINIIFAFILTTIVVIWALS |
Ga0211713_1000136419 | 3300020467 | Marine | MGFNPNRKYDANKTDYLNIVLAFLLTLIAIIWAIN |
Ga0211577_1000170320 | 3300020469 | Marine | MGFDPNRPYKANRTDYFNIIFSIILAVVAIIWALS |
Ga0211577_108873821 | 3300020469 | Marine | NVVMGFDPNRPYKANKTDYFNIVFSIILAAVAIIWALN |
Ga0211547_105382672 | 3300020474 | Marine | MGFNPNKEYKANKTDYINIIIAVILTVAVVIWALN |
Ga0213860_102572782 | 3300021368 | Seawater | MGFDPNKPYKANKTDYINIVLAVALTAAVVIWALN |
Ga0213866_105450092 | 3300021425 | Seawater | VVMGFDPNRPYKANKTDYINIIFAFILTAIVVIWALS |
Ga0222717_100094939 | 3300021957 | Estuarine Water | MGFNPNREYKANKTDYVNIVAALILTIAVVIWALS |
Ga0222717_100163415 | 3300021957 | Estuarine Water | MGFDPNRPYKANKTDYINIIFSFILTAIVVIWALS |
Ga0222717_100591392 | 3300021957 | Estuarine Water | MGFDPNRPYKANKVDYINIIAALILTVVVIVWAIS |
Ga0222718_100127006 | 3300021958 | Estuarine Water | MGFNPNREYKANKTDYVNIVAALILTIAVVIWALN |
Ga0224906_100070015 | 3300022074 | Seawater | MGFNPNKEYKANKTDYVNILSALILTIAVVIWALN |
Ga0255780_101253211 | 3300022935 | Salt Marsh | VYMGFDPNRPYKANKTDYVNIILAISLTAAVVIWAIS |
Ga0228656_10123973 | 3300024322 | Seawater | MGFDPNRPYKANKTDYLNIALCIVLAVIGIIWALN |
Ga0244777_100276316 | 3300024343 | Estuarine | MGFDPNRPYKANSTDYFNIIFSIILAVVAIIWALS |
Ga0208261_11506832 | 3300026076 | Marine | MGFDPNRPYKANKTDYINIIFAFILIAIVVIWALS |
Ga0208130_10719423 | 3300026258 | Marine | MGFDPNKPYKANKTDYLNIILALLLTIIVVIWALN |
Ga0208641_10573563 | 3300026268 | Marine | MGFDPNRPYKANKFDYINIVFCFILALLAIFWALN |
Ga0208277_100187117 | 3300026292 | Marine | MGFDPNKPYKANKTDYINIIIAFILTAIVVIWALS |
Ga0209035_101185983 | 3300027827 | Marine | MGFNPNKPYKANKADYFNIALSVTLALIAIIWALN |
Ga0257106_10107013 | 3300028194 | Marine | MGFDPNKPYKANRTDYFNIILCIALAVIAIIWALN |
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