NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F083231

Metagenome / Metatranscriptome Family F083231

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083231
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 36 residues
Representative Sequence MASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI
Number of Associated Samples 95
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 72.57 %
% of genes near scaffold ends (potentially truncated) 31.86 %
% of genes from short scaffolds (< 2000 bps) 66.37 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (73.451 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(18.584 % of family members)
Environment Ontology (ENVO) Unclassified
(53.982 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(61.062 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52
1LPjun08P41300mDRAFT_10363802
2SI47jul10_100mDRAFT_10442291
3SI53jan11_200mDRAFT_10130124
4SI54feb11_100mDRAFT_10498531
5LPjun09P162000mDRAFT_10494452
6LPjun08P4500mDRAFT_10182942
7GBIDBA_100085688
8Ga0055584_1000887444
9Ga0066640_102461492
10Ga0066607_11704462
11Ga0066859_102659412
12Ga0066868_100344451
13Ga0066866_100050172
14Ga0066866_100621172
15Ga0066866_100863231
16Ga0066831_100829811
17Ga0070728_102317071
18Ga0066838_100012065
19Ga0070722_100557402
20Ga0070722_104332092
21Ga0074475_100776194
22Ga0008649_102012232
23Ga0066369_100417322
24Ga0066369_102649271
25Ga0066373_100132321
26Ga0066373_102516352
27Ga0066382_100610372
28Ga0066836_105072882
29Ga0068470_10848582
30Ga0068471_14481293
31Ga0068500_15929352
32Ga0068482_10782722
33Ga0068481_10604781
34Ga0068481_12028992
35Ga0068481_12586513
36Ga0068481_12937402
37Ga0066376_100295165
38Ga0115659_1340951
39Ga0114950_100157776
40Ga0114950_100287435
41Ga0114950_101629402
42Ga0114948_100748375
43Ga0118730_13511781
44Ga0114949_103378262
45Ga0118722_13026222
46Ga0114932_102345093
47Ga0123573_1000631023
48Ga0129284_100564553
49Ga0129286_102324352
50Ga0114931_100197008
51Ga0114931_107888492
52Ga0114933_100210367
53Ga0115000_101437344
54Ga0118731_1104058001
55Ga0118731_1153123492
56Ga0136852_100864392
57Ga0118733_1032443182
58Ga0139250_11081031
59Ga0139246_10673321
60Ga0188885_10171642
61Ga0212167_12477497
62Ga0212167_12682252
63Ga0212168_10889062
64Ga0212168_11175554
65Ga0212228_12760445
66Ga0211679_10118312
67Ga0211566_10256062
68Ga0211662_10047876
69Ga0211662_10105684
70Ga0211601_10044734
71Ga0211554_100377505
72Ga0211544_102347481
73Ga0211585_100781584
74Ga0206686_10022818
75Ga0206683_101066323
76Ga0206683_106137861
77Ga0206696_16813401
78Ga0206691_15911731
79Ga0206688_104344672
80Ga0210365_109519651
81Ga0206689_102068051
82Ga0222718_103516731
83Ga0224511_103593872
84Ga0224499_100413972
85Ga0224506_100421382
86Ga0224501_1000307114
87Ga0224512_103052352
88Ga0224508_100940012
89Ga0233431_10110176
90Ga0233439_101105652
91Ga0233439_104695643
92Ga0210019_10059948
93Ga0210044_100148207
94Ga0209775_10348291
95Ga0209044_11371322
96Ga0210009_1000049140
97Ga0208391_100112714
98Ga0207991_10413671
99Ga0209090_105598072
100Ga0209692_104502471
101Ga0209089_103566501
102Ga0255058_100318475
103Ga0257127_10861861
104Ga0256830_10589474
105Ga0257109_10011591
106Ga0308021_101640601
107Ga0302120_102371222
108Ga0315328_105523252
109Ga0315326_102259101
110Ga0302127_101231891
111Ga0316190_100153244
112Ga0315334_107922722
113Ga0315334_115958912
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 44.44%    β-sheet: 0.00%    Coil/Unstructured: 55.56%
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Variant

5101520253035MASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVICytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
73.5%26.5%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Lake
Groundwater
Marine
Seawater
Marine
Marine
Sediment
Deep Subsurface
Marine
Marine
Seawater
Marine
Marine Sediment
Worm Burrow
Marine
Marine
Seawater
Estuarine
Marine
Marine
Estuarine Water
Pelagic Marine
Hydrothermal Chimney Microbial Mat
Hydrothermal Vent Plume
Hydrothermal Vents
Sediment
Deep Subsurface
Seawater
Sediment (Intertidal)
Sediment
Mangrove Sediment
Beach Aquifer Porewater
3.5%18.6%3.5%4.4%4.4%4.4%5.3%4.4%5.3%6.2%8.0%5.3%3.5%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LPjun08P41300mDRAFT_103638023300000141MarineMPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII*
SI47jul10_100mDRAFT_104422913300000148MarineMASKDGKIFDTIVYIGLGVNAXTALYLLLMYFEVI*
SI53jan11_200mDRAFT_101301243300000151MarineMASKDGKIFDTIVYIGLGVNALAATYLLLMYFEVI*
SI54feb11_100mDRAFT_104985313300000158MarineMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI*
LPjun09P162000mDRAFT_104944523300000163MarineMASKDGKIFDTIVYIGLGVNAIAATYLLLMYFEVI*
LPjun08P4500mDRAFT_101829423300000181MarineMPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFDII*
GBIDBA_1000856883300001683Hydrothermal Vent PlumeMASKDGKIFDTIVYIGLGVNALTATYLLLMYFEVI*
Ga0055584_10008874443300004097Pelagic MarineLRTPMASKDGKIFDTIVLIGLGVNVLTATYLLLMYFEVI*
Ga0066640_1024614923300004208GroundwaterKKHLLRIFMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI*
Ga0066607_117044623300004274MarinePRGFFMASKDGKIFDTIVYIGLGVNALAATYLLLMYFEVI*
Ga0066859_1026594123300005425MarineSQGNSMPSKNGKIFDTIVYIGLGVNGLTAVYLFLMYFEII*
Ga0066868_1003444513300005508MarineQFSQGNSMPSKNGKIFDTIVYIGLGVNGLTAVYLFLMYFEII*
Ga0066866_1000501723300005514MarineMPSKNGKIFDTIVFIGLGVNGLTALYLLLMYFEII*
Ga0066866_1006211723300005514MarineMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI*
Ga0066866_1008632313300005514MarineMPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEVI*
Ga0066831_1008298113300005516MarineMASKNGKIFDTIVYIGLGVNGLTATYLLLMYFEVI*
Ga0070728_1023170713300005588Marine SedimentMASKDGKIFDTIVIIGLGVNVLTAVYLILMYFEVI*
Ga0066838_1000120653300005592MarineMPSKNGKIFDTIVYIGLGVNGLTAVYLFLMYFEII*
Ga0070722_1005574023300005601Marine SedimentMASKDGKIFDTIVLIGLGVNLLTATYLLLMYFEVI*
Ga0070722_1043320923300005601Marine SedimentMASKDGKIFDTIVLIGLGVNVLTAAYLLLMYFEVI*
Ga0074475_1007761943300005828Sediment (Intertidal)MFQGKDGKIFNAIVAIGLGVNVLFAAYLLLMYFEVI*
Ga0008649_1020122323300005838MarineMPSKNGKIFDNIVYIGLGVNGLTALYLLLMYFEII*
Ga0066369_1004173223300005969MarineMASKDGKIFDTIVYIGLSVNAIAATYLLLMYFEVI*
Ga0066369_1026492713300005969MarineMASKDGKIFDTIVYIGLGVNALVATYLLLMYFEAYNSAEFI
Ga0066373_1001323213300006011MarineEVSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI*
Ga0066373_1025163523300006011MarineVPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII*
Ga0066382_1006103723300006013MarineMPSKDGKIFDNIVYIGLGVNGLVASYLLLMYFEII*
Ga0066836_1050728823300006166MarineMSSKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI*
Ga0068470_108485823300006308MarineVPSKDGKIFDNIVYVGLGVNGLTALYLLLMYFEII*
Ga0068471_144812933300006310MarineMASKDGKIFDTIVYIGLSVNALAATYLLLMYFEVI*
Ga0068500_159293523300006332MarineMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEAYNP
Ga0068482_107827223300006338MarineMASKDGKIFDTIVYIGLGVNGLTAVYLLLMYFEVI*
Ga0068481_106047813300006339MarineMPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEIFNPRTLT
Ga0068481_120289923300006339MarineMSSKDGKIFDTIVYIGLGVNGLAATYLLLMYFEVI*
Ga0068481_125865133300006339MarineMPSKDGKIFDNIVYVGLGVNGLTALYLLLMYFEII*
Ga0068481_129374023300006339MarineMESKDGKIFDTIVYIGLGVNGLAALYLLLMYFEII*
Ga0066376_1002951653300006900MarineMASKDGKIFDTIVYIGLGVNALVATYLLLMYFEVI*
Ga0115659_13409513300008736MarineLEDFMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI*
Ga0114950_1001577763300009030Deep SubsurfaceMPSKDGKIFDTIVYIGLGVNALVAVYLLLMKFEVI*
Ga0114950_1002874353300009030Deep SubsurfaceMASKDGKIFDTIVFIGLGVNALTATYLLLMYFNVI*
Ga0114950_1016294023300009030Deep SubsurfaceMPSKDGKIFDTIVYIGLSINVVVATYLFLMYFEVI*
Ga0114948_1007483753300009102Deep SubsurfaceMASKDGRIFDTIVFIGLGVNALTAVYLLLMYFDIL*
Ga0118730_135117813300009132MarineEFMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI*
Ga0114949_1033782623300009139Deep SubsurfaceMASKDGKIFDTIVFIGLGVNALTAVYLLLMYFDVL*
Ga0118722_130262223300009376MarineSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI*
Ga0114932_1023450933300009481Deep SubsurfaceMASKDGKIFDTIVYIGLGVNCLTAIYLLLTYFEVI
Ga0123573_10006310233300009509Mangrove SedimentMASKDGKIFDTIVYIGLGVNGLTAAYLLLMYFEII*
Ga0129284_1005645533300009514Beach Aquifer PorewaterMPSKDGKLFDTIVYIGLGANFLVAVYLFLMYFEVI*
Ga0129286_1023243523300009515SedimentMASKDGKIFDTIVLIGLGVNALTAAYLLLMYFEVI*
Ga0114931_1001970083300009702Deep SubsurfaceMASKDGKIFDTIVYIGLGINCLTAAYLLLIYFEVI*
Ga0114931_1078884923300009702Deep SubsurfaceMASKDGKIFDTIVLIGLAVNVLTAAYLLLMYFEVI*
Ga0114933_1002103673300009703Deep SubsurfaceRTFFTLEVSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI*
Ga0115000_1014373443300009705MarineDFMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI*
Ga0118731_11040580013300010392MarineMASKDGKIFDTMVYIGLGVNGLTATYLLLMYFEII*
Ga0118731_11531234923300010392MarineMASKDGKIFDTIVLIGLGVNLLTAAYLLLMYFEVI*
Ga0136852_1008643923300010412Mangrove SedimentMPSKDGKIFDTIVYIGLGVNGLTAVYLLLMYFEII*
Ga0118733_10324431823300010430Marine SedimentMASKDGKIFDMIVLIGLGVNVLTATYLLLMYFEVI*
Ga0139250_110810313300010968Hydrothermal Chimney Microbial MatMASKDGKIFDTIVLIGLAVNVLTAAYLLLMYFEVX*
Ga0139246_106733213300010969Hydrothermal Chimney Microbial MatMASKDGKXFXTIVLIGLAVNVLTAAYLLLMYFEVI*
Ga0188885_101716423300018687Freshwater LakeMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI
Ga0212167_124774973300020230SedimentMASKDGKIFDTIVFIGLGVNALTATYLLLMYFNVI
Ga0212167_126822523300020230SedimentMASKDGRIFDTIVLIGLGVNALTAVYLLLMYFNVL
Ga0212168_108890623300020231SedimentMPSKDGKIFDTIVYIGLGVNALVAVYLLLMKFEVI
Ga0212168_111755543300020231SedimentMASKDGRIFDTIVFIGLGVNALTAVYLLLMYFDIL
Ga0212228_127604453300020235SedimentMPSKDGKIFDTIVYIGLSINVVVATYLFLMYFEVI
Ga0211679_101183123300020263MarineMPSKDGKIFDNIVYIGLGVNGLVALYLLLMYFEII
Ga0211566_102560623300020272MarineMASKNGKIFDTIVYIGLGVNGLTATYLLLMYFEVI
Ga0211662_100478763300020300MarineMPSKNGKIFDTIVYIGLGVNGLTAVYLFLMYFEII
Ga0211662_101056843300020300MarineMPSKNGKIFDTIVFIGLGVNGLTALYLLLMYFEII
Ga0211601_100447343300020351MarineMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI
Ga0211554_1003775053300020431MarineMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFDVI
Ga0211544_1023474813300020443MarineTLEVSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI
Ga0211585_1007815843300020477MarineMASKDGKIFDTIVLIGLGVNGLTALYLLLMYFEVI
Ga0206686_100228183300021065SeawaterMASKDGKIFDTIVYIGLGVNALTATYLLLMYFEVI
Ga0206683_1010663233300021087SeawaterLLRIFMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI
Ga0206683_1061378613300021087SeawaterMPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII
Ga0206696_168134013300021334SeawaterMPSKNGKIFDTIVYIGLGVNGLTAVYLLLMYFEII
Ga0206691_159117313300021342SeawaterVPSKDGKIFDNIVYVGLGVNGLTALYLLLMYFEII
Ga0206688_1043446723300021345SeawaterFFTLEVSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI
Ga0210365_1095196513300021351EstuarineGILHMASKDGKIFDTIVYIGLGVNGLTAAYLLLMYFEII
Ga0206689_1020680513300021359SeawaterMAGKDGKIFDTIVYIGLGVNGLAALYLLLMYFEVINPSNSTIR
Ga0222718_1035167313300021958Estuarine WaterMASKDGKIFDTIVLIGLGVNVLTATYLLLMYFEVI
Ga0224511_1035938723300022205SedimentMASKDGKIFDTIVLIGLGVNVLTAAYLLLMYFEVI
Ga0224499_1004139723300022206SedimentMASKDGKIFDTIVLIGLGVNILTAAYLLLMYFEVI
Ga0224506_1004213823300022221SedimentMASKDGKIFDTIVLIGLGVNVLTAVYLLLMFFEII
Ga0224501_10003071143300022223SedimentMASKDGKIFDTIVLIGLGVNILTAVYLLLMYFEVI
Ga0224512_1030523523300022226SedimentVNLSRTSMASKDGKIFDTIVLIGLGVNVLTAAYLLLMYFEVI
Ga0224508_1009400123300022413SedimentMASKDGKIFDTIVLIGLGVNILTATYLLLMYFEVI
(restricted) Ga0233431_101101763300022916SeawaterMASKDGKIFDTIVYIGLGVNALAATYLLLMYFEVI
(restricted) Ga0233439_1011056523300024261SeawaterMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEII
(restricted) Ga0233439_1046956433300024261SeawaterMASKDGKIFDTIVYIGLSVNGLVALYLLLMYFEVI
Ga0210019_100599483300025142GroundwaterMSSKDGKIFDTIVMIGLGINGLTAVYLLLMFFEII
Ga0210044_1001482073300025288GroundwaterMPSKDGKIFDTIVYIGLGVNGLTAVYLLLMYFDVI
Ga0209775_103482913300025663MarineKFKFLRFFMASKDGKIFDTIVYIGLGVNALAATYLLLMYFEVI
Ga0209044_113713223300025709MarineMPSKNGKIFDNIVYIGLGVNGLTALYLLLMYFEII
Ga0210009_10000491403300025833GroundwaterMASKDGKIFDTIVYIGLGVNGLTAVYLLLMYFEVI
Ga0208391_1001127143300026108MarineMASKDGKIFDTIVYIGLGVNAIAATYLLLMYFEVI
Ga0207991_104136713300026264MarineFMASKDGKIFDTIVYIGLGVNAIAATYLLLMYFEVI
Ga0209090_1055980723300027813MarineSSMSSKDGKIFDNIVYIGLGVNALTALYLLLMYFEII
Ga0209692_1045024713300027828Marine SedimentLFKGLQMASKDGKIFDTIVIIGLGVNVLTAVYLILMYFEVI
Ga0209089_1035665013300027838MarineKYMPSKDGKIFDNIVYIGLGVNGLVASYLLLMYFEII
(restricted) Ga0255058_1003184753300027872SeawaterMASKDGKIFDTIVLIGLGVNVLTAAYLLLMYFDVI
Ga0257127_108618613300028189MarineFYPRGFFMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI
Ga0256830_105894743300028399Hydrothermal VentsMASKDGKLFDTIVLIGLGVNALMAVYLLLMYFEVI
Ga0257109_100115913300028487MarineYVPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII
Ga0308021_1016406013300031141MarineKSIFMRSSMSSKDGKIFDNIVYIGLGVNALTALYLLLMYFEII
Ga0302120_1023712223300031701MarineLVLSTRGKYMPSKDGKIFDNIVYIGLGINGLTALYLLLMYFEII
Ga0315328_1055232523300031757SeawaterEVSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI
Ga0315326_1022591013300031775SeawaterYMPSKNGKIFDNIVYIGLGVNGLTALYLLLMYFEII
Ga0302127_1012318913300032151MarineRIFMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI
Ga0316190_1001532443300032259Worm BurrowMASKDGKIFDTIVYIGLSVNGLVAFYLLLMYFEVI
Ga0315334_1079227223300032360SeawaterMSSKDGKIFDTIVYIGLGVNGLAATYLLLMYFEVI
Ga0315334_1159589123300032360SeawaterVPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII


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