Basic Information | |
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Family ID | F083231 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 113 |
Average Sequence Length | 36 residues |
Representative Sequence | MASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI |
Number of Associated Samples | 95 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 72.57 % |
% of genes near scaffold ends (potentially truncated) | 31.86 % |
% of genes from short scaffolds (< 2000 bps) | 66.37 % |
Associated GOLD sequencing projects | 93 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.54 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (73.451 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (18.584 % of family members) |
Environment Ontology (ENVO) | Unclassified (53.982 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (61.062 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 44.44% β-sheet: 0.00% Coil/Unstructured: 55.56% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.54 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Lake Groundwater Marine Seawater Marine Marine Sediment Deep Subsurface Marine Marine Seawater Marine Marine Sediment Worm Burrow Marine Marine Seawater Estuarine Marine Marine Estuarine Water Pelagic Marine Hydrothermal Chimney Microbial Mat Hydrothermal Vent Plume Hydrothermal Vents Sediment Deep Subsurface Seawater Sediment (Intertidal) Sediment Mangrove Sediment Beach Aquifer Porewater |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
LPjun08P41300mDRAFT_10363802 | 3300000141 | Marine | MPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII* |
SI47jul10_100mDRAFT_10442291 | 3300000148 | Marine | MASKDGKIFDTIVYIGLGVNAXTALYLLLMYFEVI* |
SI53jan11_200mDRAFT_10130124 | 3300000151 | Marine | MASKDGKIFDTIVYIGLGVNALAATYLLLMYFEVI* |
SI54feb11_100mDRAFT_10498531 | 3300000158 | Marine | MASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI* |
LPjun09P162000mDRAFT_10494452 | 3300000163 | Marine | MASKDGKIFDTIVYIGLGVNAIAATYLLLMYFEVI* |
LPjun08P4500mDRAFT_10182942 | 3300000181 | Marine | MPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFDII* |
GBIDBA_100085688 | 3300001683 | Hydrothermal Vent Plume | MASKDGKIFDTIVYIGLGVNALTATYLLLMYFEVI* |
Ga0055584_1000887444 | 3300004097 | Pelagic Marine | LRTPMASKDGKIFDTIVLIGLGVNVLTATYLLLMYFEVI* |
Ga0066640_102461492 | 3300004208 | Groundwater | KKHLLRIFMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI* |
Ga0066607_11704462 | 3300004274 | Marine | PRGFFMASKDGKIFDTIVYIGLGVNALAATYLLLMYFEVI* |
Ga0066859_102659412 | 3300005425 | Marine | SQGNSMPSKNGKIFDTIVYIGLGVNGLTAVYLFLMYFEII* |
Ga0066868_100344451 | 3300005508 | Marine | QFSQGNSMPSKNGKIFDTIVYIGLGVNGLTAVYLFLMYFEII* |
Ga0066866_100050172 | 3300005514 | Marine | MPSKNGKIFDTIVFIGLGVNGLTALYLLLMYFEII* |
Ga0066866_100621172 | 3300005514 | Marine | MASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI* |
Ga0066866_100863231 | 3300005514 | Marine | MPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEVI* |
Ga0066831_100829811 | 3300005516 | Marine | MASKNGKIFDTIVYIGLGVNGLTATYLLLMYFEVI* |
Ga0070728_102317071 | 3300005588 | Marine Sediment | MASKDGKIFDTIVIIGLGVNVLTAVYLILMYFEVI* |
Ga0066838_100012065 | 3300005592 | Marine | MPSKNGKIFDTIVYIGLGVNGLTAVYLFLMYFEII* |
Ga0070722_100557402 | 3300005601 | Marine Sediment | MASKDGKIFDTIVLIGLGVNLLTATYLLLMYFEVI* |
Ga0070722_104332092 | 3300005601 | Marine Sediment | MASKDGKIFDTIVLIGLGVNVLTAAYLLLMYFEVI* |
Ga0074475_100776194 | 3300005828 | Sediment (Intertidal) | MFQGKDGKIFNAIVAIGLGVNVLFAAYLLLMYFEVI* |
Ga0008649_102012232 | 3300005838 | Marine | MPSKNGKIFDNIVYIGLGVNGLTALYLLLMYFEII* |
Ga0066369_100417322 | 3300005969 | Marine | MASKDGKIFDTIVYIGLSVNAIAATYLLLMYFEVI* |
Ga0066369_102649271 | 3300005969 | Marine | MASKDGKIFDTIVYIGLGVNALVATYLLLMYFEAYNSAEFI |
Ga0066373_100132321 | 3300006011 | Marine | EVSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI* |
Ga0066373_102516352 | 3300006011 | Marine | VPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII* |
Ga0066382_100610372 | 3300006013 | Marine | MPSKDGKIFDNIVYIGLGVNGLVASYLLLMYFEII* |
Ga0066836_105072882 | 3300006166 | Marine | MSSKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI* |
Ga0068470_10848582 | 3300006308 | Marine | VPSKDGKIFDNIVYVGLGVNGLTALYLLLMYFEII* |
Ga0068471_14481293 | 3300006310 | Marine | MASKDGKIFDTIVYIGLSVNALAATYLLLMYFEVI* |
Ga0068500_15929352 | 3300006332 | Marine | MASKDGKIFDTIVYIGLGVNALTALYLLLMYFEAYNP |
Ga0068482_10782722 | 3300006338 | Marine | MASKDGKIFDTIVYIGLGVNGLTAVYLLLMYFEVI* |
Ga0068481_10604781 | 3300006339 | Marine | MPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEIFNPRTLT |
Ga0068481_12028992 | 3300006339 | Marine | MSSKDGKIFDTIVYIGLGVNGLAATYLLLMYFEVI* |
Ga0068481_12586513 | 3300006339 | Marine | MPSKDGKIFDNIVYVGLGVNGLTALYLLLMYFEII* |
Ga0068481_12937402 | 3300006339 | Marine | MESKDGKIFDTIVYIGLGVNGLAALYLLLMYFEII* |
Ga0066376_100295165 | 3300006900 | Marine | MASKDGKIFDTIVYIGLGVNALVATYLLLMYFEVI* |
Ga0115659_1340951 | 3300008736 | Marine | LEDFMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI* |
Ga0114950_100157776 | 3300009030 | Deep Subsurface | MPSKDGKIFDTIVYIGLGVNALVAVYLLLMKFEVI* |
Ga0114950_100287435 | 3300009030 | Deep Subsurface | MASKDGKIFDTIVFIGLGVNALTATYLLLMYFNVI* |
Ga0114950_101629402 | 3300009030 | Deep Subsurface | MPSKDGKIFDTIVYIGLSINVVVATYLFLMYFEVI* |
Ga0114948_100748375 | 3300009102 | Deep Subsurface | MASKDGRIFDTIVFIGLGVNALTAVYLLLMYFDIL* |
Ga0118730_13511781 | 3300009132 | Marine | EFMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI* |
Ga0114949_103378262 | 3300009139 | Deep Subsurface | MASKDGKIFDTIVFIGLGVNALTAVYLLLMYFDVL* |
Ga0118722_13026222 | 3300009376 | Marine | SMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI* |
Ga0114932_102345093 | 3300009481 | Deep Subsurface | MASKDGKIFDTIVYIGLGVNCLTAIYLLLTYFEVI |
Ga0123573_1000631023 | 3300009509 | Mangrove Sediment | MASKDGKIFDTIVYIGLGVNGLTAAYLLLMYFEII* |
Ga0129284_100564553 | 3300009514 | Beach Aquifer Porewater | MPSKDGKLFDTIVYIGLGANFLVAVYLFLMYFEVI* |
Ga0129286_102324352 | 3300009515 | Sediment | MASKDGKIFDTIVLIGLGVNALTAAYLLLMYFEVI* |
Ga0114931_100197008 | 3300009702 | Deep Subsurface | MASKDGKIFDTIVYIGLGINCLTAAYLLLIYFEVI* |
Ga0114931_107888492 | 3300009702 | Deep Subsurface | MASKDGKIFDTIVLIGLAVNVLTAAYLLLMYFEVI* |
Ga0114933_100210367 | 3300009703 | Deep Subsurface | RTFFTLEVSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI* |
Ga0115000_101437344 | 3300009705 | Marine | DFMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI* |
Ga0118731_1104058001 | 3300010392 | Marine | MASKDGKIFDTMVYIGLGVNGLTATYLLLMYFEII* |
Ga0118731_1153123492 | 3300010392 | Marine | MASKDGKIFDTIVLIGLGVNLLTAAYLLLMYFEVI* |
Ga0136852_100864392 | 3300010412 | Mangrove Sediment | MPSKDGKIFDTIVYIGLGVNGLTAVYLLLMYFEII* |
Ga0118733_1032443182 | 3300010430 | Marine Sediment | MASKDGKIFDMIVLIGLGVNVLTATYLLLMYFEVI* |
Ga0139250_11081031 | 3300010968 | Hydrothermal Chimney Microbial Mat | MASKDGKIFDTIVLIGLAVNVLTAAYLLLMYFEVX* |
Ga0139246_10673321 | 3300010969 | Hydrothermal Chimney Microbial Mat | MASKDGKXFXTIVLIGLAVNVLTAAYLLLMYFEVI* |
Ga0188885_10171642 | 3300018687 | Freshwater Lake | MASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI |
Ga0212167_12477497 | 3300020230 | Sediment | MASKDGKIFDTIVFIGLGVNALTATYLLLMYFNVI |
Ga0212167_12682252 | 3300020230 | Sediment | MASKDGRIFDTIVLIGLGVNALTAVYLLLMYFNVL |
Ga0212168_10889062 | 3300020231 | Sediment | MPSKDGKIFDTIVYIGLGVNALVAVYLLLMKFEVI |
Ga0212168_11175554 | 3300020231 | Sediment | MASKDGRIFDTIVFIGLGVNALTAVYLLLMYFDIL |
Ga0212228_12760445 | 3300020235 | Sediment | MPSKDGKIFDTIVYIGLSINVVVATYLFLMYFEVI |
Ga0211679_10118312 | 3300020263 | Marine | MPSKDGKIFDNIVYIGLGVNGLVALYLLLMYFEII |
Ga0211566_10256062 | 3300020272 | Marine | MASKNGKIFDTIVYIGLGVNGLTATYLLLMYFEVI |
Ga0211662_10047876 | 3300020300 | Marine | MPSKNGKIFDTIVYIGLGVNGLTAVYLFLMYFEII |
Ga0211662_10105684 | 3300020300 | Marine | MPSKNGKIFDTIVFIGLGVNGLTALYLLLMYFEII |
Ga0211601_10044734 | 3300020351 | Marine | MASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI |
Ga0211554_100377505 | 3300020431 | Marine | MASKDGKIFDTIVYIGLGVNGLTALYLLLMYFDVI |
Ga0211544_102347481 | 3300020443 | Marine | TLEVSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI |
Ga0211585_100781584 | 3300020477 | Marine | MASKDGKIFDTIVLIGLGVNGLTALYLLLMYFEVI |
Ga0206686_10022818 | 3300021065 | Seawater | MASKDGKIFDTIVYIGLGVNALTATYLLLMYFEVI |
Ga0206683_101066323 | 3300021087 | Seawater | LLRIFMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI |
Ga0206683_106137861 | 3300021087 | Seawater | MPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII |
Ga0206696_16813401 | 3300021334 | Seawater | MPSKNGKIFDTIVYIGLGVNGLTAVYLLLMYFEII |
Ga0206691_15911731 | 3300021342 | Seawater | VPSKDGKIFDNIVYVGLGVNGLTALYLLLMYFEII |
Ga0206688_104344672 | 3300021345 | Seawater | FFTLEVSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI |
Ga0210365_109519651 | 3300021351 | Estuarine | GILHMASKDGKIFDTIVYIGLGVNGLTAAYLLLMYFEII |
Ga0206689_102068051 | 3300021359 | Seawater | MAGKDGKIFDTIVYIGLGVNGLAALYLLLMYFEVINPSNSTIR |
Ga0222718_103516731 | 3300021958 | Estuarine Water | MASKDGKIFDTIVLIGLGVNVLTATYLLLMYFEVI |
Ga0224511_103593872 | 3300022205 | Sediment | MASKDGKIFDTIVLIGLGVNVLTAAYLLLMYFEVI |
Ga0224499_100413972 | 3300022206 | Sediment | MASKDGKIFDTIVLIGLGVNILTAAYLLLMYFEVI |
Ga0224506_100421382 | 3300022221 | Sediment | MASKDGKIFDTIVLIGLGVNVLTAVYLLLMFFEII |
Ga0224501_1000307114 | 3300022223 | Sediment | MASKDGKIFDTIVLIGLGVNILTAVYLLLMYFEVI |
Ga0224512_103052352 | 3300022226 | Sediment | VNLSRTSMASKDGKIFDTIVLIGLGVNVLTAAYLLLMYFEVI |
Ga0224508_100940012 | 3300022413 | Sediment | MASKDGKIFDTIVLIGLGVNILTATYLLLMYFEVI |
(restricted) Ga0233431_10110176 | 3300022916 | Seawater | MASKDGKIFDTIVYIGLGVNALAATYLLLMYFEVI |
(restricted) Ga0233439_101105652 | 3300024261 | Seawater | MASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEII |
(restricted) Ga0233439_104695643 | 3300024261 | Seawater | MASKDGKIFDTIVYIGLSVNGLVALYLLLMYFEVI |
Ga0210019_10059948 | 3300025142 | Groundwater | MSSKDGKIFDTIVMIGLGINGLTAVYLLLMFFEII |
Ga0210044_100148207 | 3300025288 | Groundwater | MPSKDGKIFDTIVYIGLGVNGLTAVYLLLMYFDVI |
Ga0209775_10348291 | 3300025663 | Marine | KFKFLRFFMASKDGKIFDTIVYIGLGVNALAATYLLLMYFEVI |
Ga0209044_11371322 | 3300025709 | Marine | MPSKNGKIFDNIVYIGLGVNGLTALYLLLMYFEII |
Ga0210009_1000049140 | 3300025833 | Groundwater | MASKDGKIFDTIVYIGLGVNGLTAVYLLLMYFEVI |
Ga0208391_100112714 | 3300026108 | Marine | MASKDGKIFDTIVYIGLGVNAIAATYLLLMYFEVI |
Ga0207991_10413671 | 3300026264 | Marine | FMASKDGKIFDTIVYIGLGVNAIAATYLLLMYFEVI |
Ga0209090_105598072 | 3300027813 | Marine | SSMSSKDGKIFDNIVYIGLGVNALTALYLLLMYFEII |
Ga0209692_104502471 | 3300027828 | Marine Sediment | LFKGLQMASKDGKIFDTIVIIGLGVNVLTAVYLILMYFEVI |
Ga0209089_103566501 | 3300027838 | Marine | KYMPSKDGKIFDNIVYIGLGVNGLVASYLLLMYFEII |
(restricted) Ga0255058_100318475 | 3300027872 | Seawater | MASKDGKIFDTIVLIGLGVNVLTAAYLLLMYFDVI |
Ga0257127_10861861 | 3300028189 | Marine | FYPRGFFMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI |
Ga0256830_10589474 | 3300028399 | Hydrothermal Vents | MASKDGKLFDTIVLIGLGVNALMAVYLLLMYFEVI |
Ga0257109_10011591 | 3300028487 | Marine | YVPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII |
Ga0308021_101640601 | 3300031141 | Marine | KSIFMRSSMSSKDGKIFDNIVYIGLGVNALTALYLLLMYFEII |
Ga0302120_102371222 | 3300031701 | Marine | LVLSTRGKYMPSKDGKIFDNIVYIGLGINGLTALYLLLMYFEII |
Ga0315328_105523252 | 3300031757 | Seawater | EVSMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI |
Ga0315326_102259101 | 3300031775 | Seawater | YMPSKNGKIFDNIVYIGLGVNGLTALYLLLMYFEII |
Ga0302127_101231891 | 3300032151 | Marine | RIFMASKDGKIFDTIVYIGLGVNGLTALYLLLMYFEVI |
Ga0316190_100153244 | 3300032259 | Worm Burrow | MASKDGKIFDTIVYIGLSVNGLVAFYLLLMYFEVI |
Ga0315334_107922722 | 3300032360 | Seawater | MSSKDGKIFDTIVYIGLGVNGLAATYLLLMYFEVI |
Ga0315334_115958912 | 3300032360 | Seawater | VPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII |
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