Metagenome / Metatranscriptome Family F083206

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083206
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	73 residues
Representative Sequence	RGDIVAKVFLGWRTKILRAANAFYARRREGPYRFIQNRSRISVVALKSDAAAEKSKDQLSRDF
Number of Associated Samples	103
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	18.92 %
% of genes near scaffold ends (potentially truncated)	81.42 %
% of genes from short scaffolds (< 2000 bps)	92.92 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.575 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.620 % of family members)
Environment Ontology (ENVO)	Unclassified (39.823 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.212 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.84% β-sheet: 0.00% Coil/Unstructured: 35.16%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04392	ABC_sub_bind	6.19
PF02371	Transposase_20	3.54
PF08546	ApbA_C	2.65
PF01548	DEDD_Tnp_IS110	1.77
PF08867	FRG	0.88
PF05853	BKACE	0.88
PF13414	TPR_11	0.88
PF13428	TPR_14	0.88
PF14534	DUF4440	0.88
PF13450	NAD_binding_8	0.88
PF02518	HATPase_c	0.88
PF01650	Peptidase_C13	0.88
PF12276	DUF3617	0.88
PF12850	Metallophos_2	0.88
PF04095	NAPRTase	0.88
PF07883	Cupin_2	0.88
PF12697	Abhydrolase_6	0.88
PF02823	ATP-synt_DE_N	0.88
PF14707	Sulfatase_C	0.88
PF12833	HTH_18	0.88
PF00211	Guanylate_cyc	0.88
PF02826	2-Hacid_dh_C	0.88
PF14559	TPR_19	0.88
PF01494	FAD_binding_3	0.88
PF00043	GST_C	0.88
PF14319	Zn_Tnp_IS91	0.88
PF00027	cNMP_binding	0.88
PF05598	DUF772	0.88
PF00491	Arginase	0.88
PF06411	HdeA	0.88
PF12695	Abhydrolase_5	0.88
PF03795	YCII	0.88
PF13857	Ank_5	0.88
PF01614	IclR	0.88
PF13561	adh_short_C2	0.88
PF00072	Response_reg	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.19
COG3547	Transposase	Mobilome: prophages, transposons [X]	5.31
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	2.65
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.77
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.88
COG5206	Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG3246	Uncharacterized conserved protein, DUF849 family	Function unknown [S]	0.88
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.88
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	0.88
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.88
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.88
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.88
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.88
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.88
COG0355	FoF1-type ATP synthase, epsilon subunit	Energy production and conversion [C]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.58 %
Unclassified	root	N/A	4.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.58 %
Unclassified	root	N/A	4.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.58 %
Unclassified	root	N/A	4.42 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.30 %
Unclassified	root	N/A	4.42 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	78.76 %
Unclassified	root	N/A	4.42 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	68.14 %
Unclassified	root	N/A	4.42 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.88 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	65.49 %
Unclassified	root	N/A	4.42 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.88 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.88 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	64.60 %
Unclassified	root	N/A	4.42 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.42 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	2.65 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.65 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.77 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.77 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.42 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	2.65 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.65 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.77 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.88 %
Bradyrhizobium sp. C-145	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	0.88 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10457924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300002568\|C688J35102_120369741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1020	Open in IMG/M
3300004153\|Ga0063455_101268948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	558	Open in IMG/M
3300005171\|Ga0066677_10111858	All Organisms → cellular organisms → Bacteria	1459	Open in IMG/M
3300005175\|Ga0066673_10521059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	699	Open in IMG/M
3300005179\|Ga0066684_10045895	All Organisms → cellular organisms → Bacteria → Proteobacteria	2480	Open in IMG/M
3300005289\|Ga0065704_10699686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	561	Open in IMG/M
3300005330\|Ga0070690_100603121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	834	Open in IMG/M
3300005338\|Ga0068868_101458991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	639	Open in IMG/M
3300005339\|Ga0070660_100543906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	968	Open in IMG/M
3300005340\|Ga0070689_101050255	Not Available	726	Open in IMG/M
3300005347\|Ga0070668_100948998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	771	Open in IMG/M
3300005353\|Ga0070669_100215516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1516	Open in IMG/M
3300005355\|Ga0070671_100283486	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300005356\|Ga0070674_102089080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	517	Open in IMG/M
3300005406\|Ga0070703_10049744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1336	Open in IMG/M
3300005539\|Ga0068853_101010688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	801	Open in IMG/M
3300005543\|Ga0070672_101037055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	728	Open in IMG/M
3300005561\|Ga0066699_10144087	All Organisms → cellular organisms → Bacteria	1619	Open in IMG/M
3300005719\|Ga0068861_100418388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1193	Open in IMG/M
3300005841\|Ga0068863_101363628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	716	Open in IMG/M
3300005843\|Ga0068860_100189185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1992	Open in IMG/M
3300005843\|Ga0068860_101463200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	705	Open in IMG/M
3300005843\|Ga0068860_102737637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	511	Open in IMG/M
3300005844\|Ga0068862_102554958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	522	Open in IMG/M
3300005949\|Ga0066791_10094002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	603	Open in IMG/M
3300006050\|Ga0075028_100651244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	630	Open in IMG/M
3300006057\|Ga0075026_100386399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	784	Open in IMG/M
3300006172\|Ga0075018_10091805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1334	Open in IMG/M
3300006174\|Ga0075014_100620254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	620	Open in IMG/M
3300006195\|Ga0075366_10458691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	786	Open in IMG/M
3300006237\|Ga0097621_101958354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	559	Open in IMG/M
3300006358\|Ga0068871_100786093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	876	Open in IMG/M
3300006358\|Ga0068871_101991369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	553	Open in IMG/M
3300006949\|Ga0075528_10236130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	500	Open in IMG/M
3300007788\|Ga0099795_10530196	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300009029\|Ga0066793_10772381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	546	Open in IMG/M
3300009093\|Ga0105240_12552948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	528	Open in IMG/M
3300009100\|Ga0075418_10301831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1707	Open in IMG/M
3300009101\|Ga0105247_11312549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	581	Open in IMG/M
3300009137\|Ga0066709_101669516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	906	Open in IMG/M
3300009143\|Ga0099792_10846921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	602	Open in IMG/M
3300009143\|Ga0099792_11051679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	546	Open in IMG/M
3300009143\|Ga0099792_11228774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	509	Open in IMG/M
3300009156\|Ga0111538_11475615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	857	Open in IMG/M
3300009162\|Ga0075423_10445408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1360	Open in IMG/M
3300009553\|Ga0105249_10082552	All Organisms → cellular organisms → Bacteria	2990	Open in IMG/M
3300009553\|Ga0105249_11597421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	725	Open in IMG/M
3300009661\|Ga0105858_1071428	Not Available	903	Open in IMG/M
3300009661\|Ga0105858_1149417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	659	Open in IMG/M
3300010039\|Ga0126309_11268125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	509	Open in IMG/M
3300010159\|Ga0099796_10372109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	621	Open in IMG/M
3300010371\|Ga0134125_12573069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	553	Open in IMG/M
3300010375\|Ga0105239_10734306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1130	Open in IMG/M
3300010375\|Ga0105239_13406585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	517	Open in IMG/M
3300010396\|Ga0134126_10356008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1707	Open in IMG/M
3300010397\|Ga0134124_12320311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	577	Open in IMG/M
3300010399\|Ga0134127_13034772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	547	Open in IMG/M
3300010399\|Ga0134127_13440101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	518	Open in IMG/M
3300012285\|Ga0137370_10975215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	523	Open in IMG/M
3300012582\|Ga0137358_10841315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300012897\|Ga0157285_10198391	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300012923\|Ga0137359_10481596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	1096	Open in IMG/M
3300012924\|Ga0137413_10032529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2879	Open in IMG/M
3300012944\|Ga0137410_10770181	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300012957\|Ga0164303_10208323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1088	Open in IMG/M
3300012960\|Ga0164301_11285840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	592	Open in IMG/M
3300012989\|Ga0164305_11354921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	624	Open in IMG/M
3300013296\|Ga0157374_11815472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	635	Open in IMG/M
3300013297\|Ga0157378_12558324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	563	Open in IMG/M
3300013297\|Ga0157378_12766289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	543	Open in IMG/M
3300013306\|Ga0163162_11244939	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	845	Open in IMG/M
3300014325\|Ga0163163_12045113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	632	Open in IMG/M
3300015077\|Ga0173483_10839181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	534	Open in IMG/M
3300015372\|Ga0132256_101043871	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300018028\|Ga0184608_10437710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	564	Open in IMG/M
3300018066\|Ga0184617_1064236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	963	Open in IMG/M
3300018476\|Ga0190274_12734849	Not Available	590	Open in IMG/M
3300019377\|Ga0190264_11576789	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300019767\|Ga0190267_10752816	All Organisms → cellular organisms → Bacteria → Proteobacteria	638	Open in IMG/M
3300019889\|Ga0193743_1071520	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300021479\|Ga0210410_10748280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	861	Open in IMG/M
3300025315\|Ga0207697_10010776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3894	Open in IMG/M
3300025940\|Ga0207691_10156564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2001	Open in IMG/M
3300025942\|Ga0207689_10217502	All Organisms → cellular organisms → Bacteria → Proteobacteria	1579	Open in IMG/M
3300025945\|Ga0207679_10278414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1434	Open in IMG/M
3300025972\|Ga0207668_11843802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	545	Open in IMG/M
3300026075\|Ga0207708_10369929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	1180	Open in IMG/M
3300026089\|Ga0207648_10676603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	955	Open in IMG/M
3300026142\|Ga0207698_10891689	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300026220\|Ga0209855_1034934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	879	Open in IMG/M
3300026496\|Ga0257157_1023874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1000	Open in IMG/M
3300026530\|Ga0209807_1343831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	508	Open in IMG/M
3300027388\|Ga0208995_1099508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	505	Open in IMG/M
3300027821\|Ga0209811_10350464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	571	Open in IMG/M
3300027894\|Ga0209068_10197476	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300027915\|Ga0209069_10344455	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300028011\|Ga0265344_102896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	558	Open in IMG/M
3300028885\|Ga0307304_10213481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300030522\|Ga0307512_10125204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1634	Open in IMG/M
3300031057\|Ga0170834_111779575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	618	Open in IMG/M
3300031095\|Ga0308184_1025847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	658	Open in IMG/M
3300031184\|Ga0307499_10058994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	962	Open in IMG/M
3300031507\|Ga0307509_10094289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3052	Open in IMG/M
3300031730\|Ga0307516_10963781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	523	Open in IMG/M
3300031740\|Ga0307468_100160948	All Organisms → cellular organisms → Bacteria → Proteobacteria	1458	Open in IMG/M
3300032012\|Ga0310902_10691680	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300032174\|Ga0307470_11539678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	554	Open in IMG/M
3300033180\|Ga0307510_10282527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1129	Open in IMG/M
3300034384\|Ga0372946_0336020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	733	Open in IMG/M
3300034817\|Ga0373948_0057716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.29%
Host-Associated	Host-Associated	40.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.21%
Plants	Host-Associated → Plants	40.71%
Aquatic	Environmental → Aquatic	7.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.39%
Roots	Host-Associated → Plants → Roots	7.96%
Sediment	Environmental → Aquatic → Sediment	7.08%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.62%
Loam	Environmental → Terrestrial → Soil → Loam	9.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.31%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.54%
Unclassified	Host-Associated → Plants → Roots → Unclassified	3.54%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.31%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.54%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.54%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	3.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.31%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.54%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	3.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.65%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.77%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005949	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300006949	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026220	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063 (SPAdes)	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028011	Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE1	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030522	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM	Host-Associated	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033180	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM	Host-Associated	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_104579242	3300001593	Forest Soil	SKSTLCADIVAKVFLGWRTKILRAADYARRREGPYRFIQNRSRTSVVALKSEAAAEKSKDQL*
C688J35102_1203697412	3300002568	Soil	AAPRIAGTREDQFLYLMLGLLLADIVAKVFSGERSKILRPVDAFYVPRREGPYRFIQNRSRNPVVALKGDAAVERSKDRLSREF*
Ga0063455_1012689481	3300004153	Soil	PRIAGTREDQFLYLMLGLLLADIVAKVFSGERSKILRPVDAFYVPRREGPYRFIQNRSRNPVVALKGDAAVERSKDRLSREF*
Ga0066677_101118582	3300005171	Soil	MLGLLLADIVAKVFSGERSKILRPVDAFYVPRREGPYRFIQNRSRNPVVALKGDAAAERSKDRLSREF*
Ga0066673_105210591	3300005175	Soil	MESIGPLTADIVAKVFSGERTKILRPVDALYVRRREGPYRFIQNRSRTPVVALKGDAAAERSKDRLSREF*
Ga0066684_100458953	3300005179	Soil	MLGLLLADIVAKVFSGERSKILRPVDAFYVPRREGPYRFIQNRSRNPVVALKGDAA
Ga0065704_106996862	3300005289	Switchgrass Rhizosphere	DIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIPW*
Ga0070690_1006031211	3300005330	Switchgrass Rhizosphere	ADIVAKVFLGWRTKILRAADALYARRREGSYRFIQNRSGISVVALKSSTAAEKSKDQLSRDFPGRSVFDFCNNIQPKADVQPSRLLTG*
Ga0068868_1014589912	3300005338	Miscanthus Rhizosphere	AKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDATAEKSKDQLSRDFPGRSIFDFCNNIEGKADCPVARSDF*
Ga0070660_1005439061	3300005339	Corn Rhizosphere	VADIVAKVSLGGQPKFFSAADAFCERRRERPHRFIQNRPGTSVAALKSDTAAEKSKDQLSRDFPGRSIFDFCN
Ga0070689_1010502551	3300005340	Switchgrass Rhizosphere	MTRCADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCN
Ga0070668_1009489981	3300005347	Switchgrass Rhizosphere	TDIVAKVFLGWRTKILSAADASSAQRREGPYRFIQNRSRSAVVALKSDAAAEKSKDRLSRDF*
Ga0070669_1002155162	3300005353	Switchgrass Rhizosphere	ADIVAKVFLGGRTKFLRAADAFYERRREGPYRFIQNRPGTSVVALKSDTAAEKAKDQLSRDFSGRSIFDFCNNICQLRSPPFFRRGQRCR*
Ga0070671_1002834861	3300005355	Switchgrass Rhizosphere	PLWVDIVAKVFSVWRPKIPRAVDASSARRREGPNRFIQNRSRTSVVALKSDAAAEKSEDRLSRDFYGCSIFDFCNKIGT*
Ga0070674_1020890801	3300005356	Miscanthus Rhizosphere	MACRLKACPLWVDIVAKVFLGGRTKFIRAVDAYSERRREGPYRFIQNRPGTSVVALKSDTAAEKAKDQLSRDFSGRSIFDFCNNI
Ga0070703_100497441	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	LVRRPLSADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAENSKDQLSRDFPGRSIFDFCNNICQKRK*
Ga0068853_1010106881	3300005539	Corn Rhizosphere	DIVAKVFLGWRTKILGAADALYARQHEGPYRFIQNRSRTSVVALKSDAAAEKSKDQPSRDFPGRPIFDCCNNIRCKVDLALECIEVRV*
Ga0070672_1010370553	3300005543	Miscanthus Rhizosphere	MSFDVCFRGDIVAKVFLGWRTKIPRAADASYARPREGPYRFIQNRSRTFAVTLKSDAAAEKSKDRLSRDF*
Ga0070704_1003592412	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MHGDVVRLGVDIVAKVFLGRRTKILGAADALYARQREGPYRFIQNRSRTSVVAL
Ga0066699_101440872	3300005561	Soil	MLGLLLADIVAKVFSGERSKILRPVDAFYVPRREGPYRFIQNRSRNPVVALKGDAAVERSKDRLSREF*
Ga0068861_1004183883	3300005719	Switchgrass Rhizosphere	GDIVAKVFLGWRTKILRAADAFCARRREGPYRFIQNRSPTSVAALKSDAAAEKSKDQLSREF*
Ga0068863_1013636281	3300005841	Switchgrass Rhizosphere	KVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGT*
Ga0068860_1001891851	3300005843	Switchgrass Rhizosphere	MWRPTARGLLLADIVAKVFLGGRTKFLRAADAFYERRREGPYRFIHNRPGTSIVALKSDTAAEESKDQLSRDFSGRSIFD
Ga0068860_1014632003	3300005843	Switchgrass Rhizosphere	RTCRRTRPGQLCADFVAKVFLGWRTKILKAADAFCARRHEGPHRFIQNRSRISAVALNSDAVGENSKDQLSRDF*
Ga0068860_1027376372	3300005843	Switchgrass Rhizosphere	DIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNICQ*
Ga0068862_1025549581	3300005844	Switchgrass Rhizosphere	MADIVAKVFLGWRTKILRAADALYAWQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPG
Ga0066791_100940021	3300005949	Soil	LLLTDIVAKVFLGWRTKILRAADAFYARRREGPYRFIQNRSLGSVVALKSDAAAEKSKDQLSRDF*
Ga0075028_1006512441	3300006050	Watersheds	TIVRETGRLRADIVAKVFLERRTKIPRAADAYYARRREGPCRFIQNRSLASVGALKSDAAAAEKSKDQLSRDF*
Ga0075026_1003863992	3300006057	Watersheds	MMVLLRRKSPGLADFVAKVFLGCRTKILRAVGAFCAQRCEGPYRLIQNRPRASVMALKSDAATERSKDQLP
Ga0075018_100918052	3300006172	Watersheds	VKKLFPVMADFVAKVFLGRRTKILRAADAFCARRCEGPYRLIQNRLRTSVMALKSNAAAERSKDQLSRDFWGCSIFDFCN
Ga0075014_1006202541	3300006174	Watersheds	IVAKVFLGCRTKILGAADAFYAWRREGPYRFIQNRPRTFLAALKSYGAAEKSKDQLSQDFWGCSIFDFCNNICQRATLPGYLK*
Ga0075366_104586911	3300006195	Populus Endosphere	LLADIVAKVFLGRRSKIPKAADALHARRGEGPYRFIQNRSRVPVTALKSDAATE*
Ga0097621_1019583541	3300006237	Miscanthus Rhizosphere	LADIVAKVFLGWRTKILRAADALYARQLEGPYRFIQNRSRASAVALKSDAAAEKSRDQLSRDFPGRSIFDFCNNI
Ga0068871_1007860932	3300006358	Miscanthus Rhizosphere	SADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNNICHYRK*
Ga0068871_1019913691	3300006358	Miscanthus Rhizosphere	ADIVAKVFLGGRTKFFRAADAFYERRREGPYRFIQNWSGISVVALKSSTAAEKSKDQLSRDFPGRSVFDFCNNIQPKADVQPSRLLTG*
Ga0066797_12798232	3300006864	Soil	RSLRVDTVAKVLLGRRTKILRTADAFQARRREGPHRFIQKRPRTFVSAL*
Ga0075528_102361301	3300006949	Arctic Peat Soil	DIVAKVFLGWRTKILRAADAFYARRRDGPYRFIQNRSRVSLVALKSDPAAEKSKDQLSPDF*
Ga0099795_105301961	3300007788	Vadose Zone Soil	MSPLLADIVAKVFLGWRTKTLRAAGAFSARRREGPYRFIQNRSRASVVALKSDAAAEKSKDQLWRDFQG
Ga0066793_107723811	3300009029	Prmafrost Soil	VADFVAKVFLGCRTKILRATDAFYARRREGPYRSVRNRPRSFVAALNSEAAAEK
Ga0105240_125529481	3300009093	Corn Rhizosphere	VKVPFAADIVAKVFLGGRTKFFRAADAFYERRREGPYRFIQNRPGASVVALKSDTAAEKAKDQLSRDFSGRSIFDFCNMG*
Ga0075418_103018313	3300009100	Populus Rhizosphere	DIVAKVFLGGRTKFLRAADAFYERRREGPYRFIQNRPGASVVALKSDTAAEKAKDQLSRDFSGRSIFDFCNNIGT*
Ga0105247_113125492	3300009101	Switchgrass Rhizosphere	MTRCADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNNI
Ga0066709_1016695161	3300009137	Grasslands Soil	KAPLTEWPLLADIVAKVFSARRSKIPRGADPLHAWRRQGPYRFIQNRSRTSVVALESDAAPEKFKDHLSRDI*
Ga0099792_108469211	3300009143	Vadose Zone Soil	MADIVAKVFLGWRTKILRAADGFFAWRREGPYRFIQNRSRTSVVALKANAAAEKSKDQLSRDF*
Ga0099792_110516791	3300009143	Vadose Zone Soil	MNRHRQLGATRPKSADIVAKVFLGWRTKILRALMRYTRQREGPYRFIQNRSRTSAVALKSDAAAEKS
Ga0099792_112287741	3300009143	Vadose Zone Soil	MSVLEDFVAEVFLGCRTKILRAADAFYAQRREGPYRFIQNRPRTSLVALKSDAAAERSTDQLSRDF*
Ga0111538_114756151	3300009156	Populus Rhizosphere	MADIVAKVFLGWRTKILRAADELYARQREGPYRFIQNRSRTSAVALKSDAAAENSKDQL
Ga0075423_104454083	3300009162	Populus Rhizosphere	LDIATRLKSADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGT*
Ga0105249_100825521	3300009553	Switchgrass Rhizosphere	TRDSSAYFRFRRDIVAKVFLGWRTKILGAADALYARQHEGPYRFIQNRLLTSVAALKSDAAAEKSKDQLSRDF*
Ga0105249_115974212	3300009553	Switchgrass Rhizosphere	LADFVAKVFLGCRTKILRAADTFWARRRKGPYRFIQNRSPTSVAALKSVAAAEKSKDQLSRDF*
Ga0105858_10714282	3300009661	Permafrost Soil	CMSLFLADIVAKVFLACRRKIPGAAGAFYARRGEGPYRFIQNRSLASFVALKGAAAAEKSKDQLSRDF*
Ga0105858_11494171	3300009661	Permafrost Soil	MKPRLPVMADIVAKVFLGWRTKILRAADAFYARRREGPYRFIQNRSLGSVVALKSDAAAEKSKDQLSRDF*
Ga0126309_112681251	3300010039	Serpentine Soil	MSPLVADIVAKVFSGWRTKIPRAADALYSRRREGPYRFIQNRSRTSVVELKSYAAAEKSK
Ga0099796_103721091	3300010159	Vadose Zone Soil	MSVEHILPIPLVADIVANVFLGRRTKILRAADALCARRSEGPYRFIRNRSRTSVVALRSDATAEKSKDQLSRDFQGRSIFDFCNKIGT
Ga0134125_125730691	3300010371	Terrestrial Soil	MWRPTARGLLLSDIVAKVFLGGRTKFLRDADAFYERRREGPYRFIHNRPGTSIVALKSDTAAEESKDQLSRDFSGRSIFD
Ga0105239_107343061	3300010375	Corn Rhizosphere	KVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDATAEKSKDQLSRDFPGRSIFDFCNNIEGKADCPVARSDF*
Ga0105239_134065851	3300010375	Corn Rhizosphere	MWRPTARGLLLADIVAKVFLGGRTKFLRAADAFYERRREGPYRFIHNRPGTSIVALKSDTAAEESKDQLSRD
Ga0134126_103560081	3300010396	Terrestrial Soil	LTDIVAKVFLGWRTKILGAADALYARQHEEPYRFIQNRSRTSVLALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGAKRTFGPLAIS*
Ga0134124_123203112	3300010397	Terrestrial Soil	LDIATRLKSADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNI
Ga0134127_130347721	3300010399	Terrestrial Soil	SADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGGKPEVIDGGPNRRD*
Ga0134127_134401011	3300010399	Terrestrial Soil	IVAKVFLGWRTKIPRAADASYARPREGPYRFIQNRSRTFAVTLKSDAAAEKSKDRLSRDF
Ga0137370_109752151	3300012285	Vadose Zone Soil	ERTRGREGQLLADIVAKVFSGERTKILRPVDALYVRRREGPYRFIQNRSRTPVVALKGDAAAERSKDRLSREF*
Ga0137358_108413152	3300012582	Vadose Zone Soil	TLKSRHRQSAPARLLCADIVAKAFLGWRMKIFRAAEAFCARRREGPYRVIQNRSRTSAVALESDAAAEKSKDQLSRDF*
Ga0157285_101983912	3300012897	Soil	MVDFVAKVFLGWRTKILRAADALCARRCEGPYRFIQNRARTFVAALKSDAAAEKAKDRLSRDYK
Ga0137359_104815963	3300012923	Vadose Zone Soil	MERLLVADIVAKVFLGGRTKFFRAADAFYEWRREGPYRFIQNRPGISIVALKSNTAAEKSKDHLSRDFPGRSIFDFCNNIGAKRSVGDLKRG*
Ga0137413_100325291	3300012924	Vadose Zone Soil	DIVAKVFLGGRTKFFRAADAFYERRREGPYRFIQNRPRISVVALKSNTAAEKSKDQLSRDFPGRSIFDFCNNICHFRISTRATCKE*
Ga0137410_107701811	3300012944	Vadose Zone Soil	MPGSGQKLTFTGCPLLADIVAKVFLGWRTKILRAADAFYARRREGPYRFIQNRSLTSIGALKSDAAAEKSKDQLSRDF*
Ga0164303_102083232	3300012957	Soil	ADIVAKVFLGWRTKILRAADAFYAGRREGPYRFIQNRSRTSVLALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGT*
Ga0164301_112858401	3300012960	Soil	CPRSLVVADIVAKVFLGRRTKILRAADAFYARRREGPHRFIQNRSPTFVAALKNDAAAEKSKDQLSRDF*
Ga0164305_113549211	3300012989	Soil	SVAKRVLGWRTKILGAAEAFYARRREGPYRFIQNRSPTSVAALKSDAAAEKSKDQLSRDFPGRSIFDFCNNICHKRKNSR*
Ga0157374_118154721	3300013296	Miscanthus Rhizosphere	VADIVAKVSLGGQPKFFSAADAFCERRRERPHRFIQNRPGTSVAALKSDTAAEKSKDQLSRDFPGRSIFDF
Ga0157378_125583242	3300013297	Miscanthus Rhizosphere	MDIRFRRDIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCN
Ga0157378_127662891	3300013297	Miscanthus Rhizosphere	MSGGGDCGQECPELADIVAEVFLGQQSKTPKAADALHARRGERPYRFIQNRSRASVTALKSDAAAEKSKDQLSRDF*
Ga0163162_112449391	3300013306	Switchgrass Rhizosphere	MTDIVEKVFSGWRPKILRAADASSARRREGPNRFIQNRSRTSVVALKSDAAAEKSKDRLSRDF*
Ga0163163_120451132	3300014325	Switchgrass Rhizosphere	LLPRLSQVRSYLDSRHRRARLARPFRADIVAKVFSSWRPKILRAADASSARRREGPKRFIQNRSRASVVALKSDAAAEKSKDRLSRDF*
Ga0173483_108391811	3300015077	Soil	LRPPGDIVAKVFSGWRTKILRPADAFCAWRREGPYRFIQNRSPTSVVALKSDAAAEKSKDQLWRDFQACSIFDFCNNIEGGADIPPQGRDFPLWFT*
Ga0132256_1010438711	3300015372	Arabidopsis Rhizosphere	MTDIVEKVFSGWRPKIPRAADASSGRRREGPNRFQNRSRTSVVALKSDAAAEKSKDRL
Ga0184608_104377101	3300018028	Groundwater Sediment	MLRCISPDVADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIRQ
Ga0184617_10642362	3300018066	Groundwater Sediment	ALQCPVLADIVAKVFLGWRTKILRAADALYARQREGPYRFIRNRSRASVVALRSDATAEKSKDQLSRDFPGRSVFDFCNMG
Ga0190274_127348491	3300018476	Soil	IVEKVILGWRTKILRAADALYSRRREGPYRFIQNRSRTSVAALKSDAAAEKSEDRHSRDF
Ga0190264_115767891	3300019377	Soil	VADIVAKVFLGWRSKIPKAADALHARRGEGPYRFIQNRSRTSVTALKSDAATEESEDQPWRDFLACSILGFCNNIR
Ga0190267_107528161	3300019767	Soil	NGHRWTALACLFGADIVAKVFLGRRTKFFRAADAFYEWRREGPYRFIQNRSRTSIVALKSDAAAEKSKDQLSRDF
Ga0193743_10715202	3300019889	Soil	MADIVAKVFLGRRTKIFRTADAFYTPRREGLYRFIQNRSRVSVVALKSDAAAEKP
Ga0210410_107482802	3300021479	Soil	RLLADIVAKVFLGWRTKILRAADASYARRREGPYRFTQNPSRISVVALKSDAAVEKSKDQLSRDF
Ga0207697_100107761	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MADIVAKVFLGRRTKILRAADALYARQRGGPYRFIQNRSRASAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNMG
Ga0207691_101565641	3300025940	Miscanthus Rhizosphere	DIVVKVFLGWRTKILRAADASSAQRREGRYRFIQNRSRSAVVALKSDAAAEKSKDRLSRD
Ga0207689_102175022	3300025942	Miscanthus Rhizosphere	MADIVAKVFLGRRTKILRAADALYARQRGGPYRFIQNRSRASAVALKSDAAAEKSKDQLSRDFPGRSI
Ga0207679_102784141	3300025945	Corn Rhizosphere	TAADIVAKVFSSWRPKILRAADASSARRREGPKRFIQNRSRASVVALKSDAAAEKSKDRLSRDF
Ga0207668_118438021	3300025972	Switchgrass Rhizosphere	AIENVRRRLPLLADIVAKVFLGWRTKIPRAADASYARPREGSYRFIQNRSRTFAVTLKSDAAAEKSKDRLSRDF
Ga0207708_103699291	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	QPRLSGPKSADSVAKVFLGGRTKFLRAADAFYERRREGPYRFIQNRPGTSIVALKSVTAAEESKDQLSRDFSGRSIFDFCNNICQ
Ga0207648_106766032	3300026089	Miscanthus Rhizosphere	MWRPTARGLLLADIVAKVFLGGRTKFLRAADAFYERRREGPYRFIHNRPGTSIVALKSDTAA
Ga0207698_108916892	3300026142	Corn Rhizosphere	MPTVRDGVRFRGDIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIEGKA
Ga0209855_10349341	3300026220	Permafrost Soil	PALADIVAKVFLGWRTKILRAADVFYAWRREGPYRFIQNRSRAPVAALKSDAEAEKSKDQLSRDF
Ga0257157_10238742	3300026496	Soil	HVRPLMADIVAKVFLGWRTKILRAADASYARRREGPYRFTQNRSRISVVALKSDAAAEKSKDQLSRDI
Ga0209807_13438311	3300026530	Soil	GLKSIIAPCPKSADIVAKVFSGERSKILRPVDALHVPRREGPYRFIQNRSRNPVVALKGDAAAERSKDRLSREF
Ga0208995_10995081	3300027388	Forest Soil	RGDIVAKVFLGWRTKILRAANAFYARRREGPYRFIQNRSRISVVALKSDAAAEKSKDQLSRDF
Ga0209811_103504641	3300027821	Surface Soil	LKGADIVAKVFLGWRTKILRAADASSARRREGPYRFIQNRSRTSVVALKSDAAAEKSKDRLSRDF
Ga0209068_101974761	3300027894	Watersheds	ADIVAKVFLGGRAKIFRTADAFYERRREGPYRFIQNRSRASLVALKRDAAAEKSKDQLSRDF
Ga0209069_103444551	3300027915	Watersheds	MESIVKMEPLKLADIVAKAFLGWRAKILKAADAFYARQREGPYRFIQNRSRTSVVALKSDTAAEKSKDQLS
Ga0265344_1028961	3300028011	Plant Litter	RQSRLLADIVAKVFSGWRTKILRAAEAFYARRREGPYRFIQNRSRTSVVALKRDTEAEKSEDQLSRDF
Ga0307304_102134811	3300028885	Soil	GLLCADIVAKVFLGWRTKILRAADALYARQREDHIVSSSRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNMG
Ga0307512_101252041	3300030522	Ectomycorrhiza	MLQKSFWGGRTKYFRAADAFYERRREGPYRFIQNRPRISVVALKSNTAAEKSKDQLSRDFPGRSIFDFCNNIGTFETC
Ga0170834_1117795752	3300031057	Forest Soil	PKGADIVAKVFSGRRTKILRAADAYSPQRREGPYRFIQNRSRTSVTALKSDAAAEKSKYRLSRDFQGCSIFDFCNNIATKRTCGNA
Ga0308184_10258472	3300031095	Soil	VFLGGRTKFFRAAGAFYERRREGPYRYIQNRPGISVVALKRNTAAEKSKDQLSRDFPGRSIFDFRNKIGTFRT
Ga0307499_100589942	3300031184	Soil	MPDIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDF
Ga0307509_100942898	3300031507	Ectomycorrhiza	MRTACLKGADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIRQ
Ga0307516_109637811	3300031730	Ectomycorrhiza	MAYHGDFRSTAVNGHLRAGRACLKGADIVAKVFLGWRTKILRAADALFARQREGPYRFIQNRSRTSAVALKSDAAAEKSK
Ga0307468_1001609482	3300031740	Hardwood Forest Soil	MADIVAKVFLGRRTKILRAADALYARQRGGPYRFIQNRSRASAVALKSDAAAEKSKDQLSRDFPGR
Ga0310902_106916801	3300032012	Soil	TSVVGHFSDLTGLPDEVRSRGDFVAKVFLGWRTKILKAADAFCARRHEGPHRFIQNRSRISAVALNSDAVGENSKDQLSRDF
Ga0307470_115396781	3300032174	Hardwood Forest Soil	VAKVFLGWRTKILRAADAVYARRREGPYRFIQNRSRTSVLALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGT
Ga0307510_102825272	3300033180	Ectomycorrhiza	LKGADIVAKVFLGCRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNMG
Ga0372946_0336020_37_306	3300034384	Soil	MIVRAIFGEGPLLADIVAKVFLGWRTKILRAADALYARQREGPHRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNNICQ
Ga0373948_0057716_64_318	3300034817	Rhizosphere Soil	MRLECGVGFRQLRTHRRTRRGSYVPTAKVFLGWRMKILRAADAFYARRREGPYRFIQNRSRASAVALKSDAAAEKSKDQLSRDF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083206

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences