Metagenome / Metatranscriptome Family F083146

Basic Information
Family ID	F083146
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	43 residues
Representative Sequence	MQAGDYLNTALVFSGIIMIAILGLVLDACLRGLLLLADPSRRR
Number of Associated Samples	95
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.42 %
% of genes near scaffold ends (potentially truncated)	80.53 %
% of genes from short scaffolds (< 2000 bps)	89.38 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Most Common Taxonomy
Group	Bacteria (81.416 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (12.389 % of family members)
Environment Ontology (ENVO)	Unclassified (21.239 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.558 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.93% β-sheet: 0.00% Coil/Unstructured: 45.07%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF09130	DUF1932	13.27
PF02566	OsmC	7.96
PF00581	Rhodanese	4.42
PF00390	malic	2.65
PF00496	SBP_bac_5	2.65
PF09664	DUF2399	2.65
PF13304	AAA_21	1.77
PF00561	Abhydrolase_1	1.77
PF05544	Pro_racemase	1.77
PF00753	Lactamase_B	1.77
PF01553	Acyltransferase	1.77
PF00296	Bac_luciferase	1.77
PF04951	Peptidase_M55	1.77
PF12706	Lactamase_B_2	1.77
PF00005	ABC_tran	1.77
PF02668	TauD	1.77
PF03640	Lipoprotein_15	1.77
PF02366	PMT	1.77
PF02771	Acyl-CoA_dh_N	1.77
PF04199	Cyclase	1.77
PF00106	adh_short	1.77
PF02517	Rce1-like	0.88
PF07702	UTRA	0.88
PF09348	DUF1990	0.88
PF13380	CoA_binding_2	0.88
PF01613	Flavin_Reduct	0.88
PF00202	Aminotran_3	0.88
PF12697	Abhydrolase_6	0.88
PF13777	Obsolete Pfam Family	0.88
PF04185	Phosphoesterase	0.88
PF13419	HAD_2	0.88
PF01654	Cyt_bd_oxida_I	0.88
PF07077	DUF1345	0.88
PF02452	PemK_toxin	0.88
PF05726	Pirin_C	0.88
PF00722	Glyco_hydro_16	0.88
PF01593	Amino_oxidase	0.88
PF01738	DLH	0.88
PF13298	LigD_N	0.88
PF04138	GtrA	0.88
PF05995	CDO_I	0.88
PF13191	AAA_16	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	13.27
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	7.96
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	7.96
COG0281	Malic enzyme	Energy production and conversion [C]	2.65
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	1.77
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	1.77
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.77
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.77
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.77
COG3938	Proline racemase/hydroxyproline epimerase	Amino acid transport and metabolism [E]	1.77
COG5553	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily	General function prediction only [R]	0.88
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.88
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.88
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.88
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	0.88
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.88
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.88
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.88
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.42 %
Unclassified	root	N/A	18.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.42 %
Unclassified	root	N/A	18.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.42 %
Unclassified	root	N/A	18.58 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.33 %
Unclassified	root	N/A	18.58 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	49.56 %
Unclassified	root	N/A	18.58 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.54 %
Candidatus Dormibacteraeota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota	0.88 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.97 %
Unclassified	root	N/A	18.58 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.54 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	0.88 %
Candidatus Dormibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.58 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	4.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.54 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.65 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.65 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.77 %
unclassified Candidatus Dormibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter	0.88 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	0.88 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.58 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	4.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.65 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.77 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	0.88 %
Candidatus Terrybacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Terrybacteria	0.88 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.58 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.65 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.77 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.77 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.88 %
Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Terrybacteria → Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15	0.88 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	0.88 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.58 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.65 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.77 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.88 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.88 %
Streptosporangium canum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	0.88 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.88 %
Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Terrybacteria → Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15	0.88 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.58 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.65 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.77 %
Streptomyces sp. NBS 14/10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. NBS 14/10	0.88 %
Frankia sp. Iso899	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso899	0.88 %
Streptosporangium canum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	0.88 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.88 %
Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Terrybacteria → Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15	0.88 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02F8IM5	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
2170459010\|GIO7OMY02IHQRE	Not Available	500	Open in IMG/M
3300005434\|Ga0070709_10179517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1485	Open in IMG/M
3300005434\|Ga0070709_10609226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	841	Open in IMG/M
3300005437\|Ga0070710_10576019	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300005439\|Ga0070711_101930401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	519	Open in IMG/M
3300005445\|Ga0070708_100661007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	984	Open in IMG/M
3300005468\|Ga0070707_100675077	Not Available	996	Open in IMG/M
3300005471\|Ga0070698_100026818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5992	Open in IMG/M
3300005536\|Ga0070697_100390280	Not Available	1207	Open in IMG/M
3300005563\|Ga0068855_102440671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	521	Open in IMG/M
3300005614\|Ga0068856_101670303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	650	Open in IMG/M
3300005921\|Ga0070766_10665248	Not Available	703	Open in IMG/M
3300005921\|Ga0070766_10886545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	611	Open in IMG/M
3300005995\|Ga0066790_10092562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1299	Open in IMG/M
3300005995\|Ga0066790_10173696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	922	Open in IMG/M
3300006028\|Ga0070717_10325074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1371	Open in IMG/M
3300006050\|Ga0075028_101074248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	504	Open in IMG/M
3300006173\|Ga0070716_100589141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	835	Open in IMG/M
3300006755\|Ga0079222_10440518	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300006804\|Ga0079221_10052584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1833	Open in IMG/M
3300009520\|Ga0116214_1440466	Not Available	510	Open in IMG/M
3300009522\|Ga0116218_1007013	All Organisms → cellular organisms → Bacteria	5155	Open in IMG/M
3300009545\|Ga0105237_10273484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1692	Open in IMG/M
3300009631\|Ga0116115_1193501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300009764\|Ga0116134_1001425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12120	Open in IMG/M
3300010048\|Ga0126373_10125490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2407	Open in IMG/M
3300010358\|Ga0126370_11786518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	594	Open in IMG/M
3300010366\|Ga0126379_10102020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2555	Open in IMG/M
3300010371\|Ga0134125_12015308	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300010373\|Ga0134128_12399631	Not Available	581	Open in IMG/M
3300010375\|Ga0105239_10745023	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1121	Open in IMG/M
3300010376\|Ga0126381_104001736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	574	Open in IMG/M
3300010379\|Ga0136449_101206671	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300010379\|Ga0136449_102686642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	707	Open in IMG/M
3300010379\|Ga0136449_102732819	Not Available	699	Open in IMG/M
3300010397\|Ga0134124_10419767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1277	Open in IMG/M
3300010398\|Ga0126383_10779026	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300011106\|Ga0151489_1550777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	677	Open in IMG/M
3300012198\|Ga0137364_10272857	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300012210\|Ga0137378_11032125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300012351\|Ga0137386_10682781	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300012929\|Ga0137404_10681418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	929	Open in IMG/M
3300012958\|Ga0164299_11513117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300012971\|Ga0126369_11315709	Not Available	813	Open in IMG/M
3300012977\|Ga0134087_10777002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516	Open in IMG/M
3300013308\|Ga0157375_11211029	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300014162\|Ga0181538_10675174	Not Available	536	Open in IMG/M
3300014491\|Ga0182014_10006620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12381	Open in IMG/M
3300014491\|Ga0182014_10435060	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300014501\|Ga0182024_11179997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	897	Open in IMG/M
3300015264\|Ga0137403_10609710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	956	Open in IMG/M
3300017926\|Ga0187807_1014009	All Organisms → cellular organisms → Bacteria	2466	Open in IMG/M
3300017926\|Ga0187807_1021804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso899	1975	Open in IMG/M
3300017926\|Ga0187807_1137816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	777	Open in IMG/M
3300017948\|Ga0187847_10743427	Not Available	553	Open in IMG/M
3300017948\|Ga0187847_10906645	Not Available	502	Open in IMG/M
3300017966\|Ga0187776_11359176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	539	Open in IMG/M
3300017970\|Ga0187783_10798537	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300017972\|Ga0187781_11338592	Not Available	529	Open in IMG/M
3300017995\|Ga0187816_10327828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	674	Open in IMG/M
3300018006\|Ga0187804_10168299	Not Available	928	Open in IMG/M
3300018030\|Ga0187869_10135169	Not Available	1229	Open in IMG/M
3300018033\|Ga0187867_10506047	Not Available	664	Open in IMG/M
3300018034\|Ga0187863_10196354	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300018037\|Ga0187883_10561783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300018060\|Ga0187765_10105659	Not Available	1540	Open in IMG/M
3300018060\|Ga0187765_10259027	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300018086\|Ga0187769_10556327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	867	Open in IMG/M
3300019082\|Ga0187852_1320695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	614	Open in IMG/M
3300020062\|Ga0193724_1120144	Not Available	520	Open in IMG/M
3300020582\|Ga0210395_10750164	Not Available	729	Open in IMG/M
3300021374\|Ga0213881_10436322	Not Available	591	Open in IMG/M
3300021377\|Ga0213874_10086367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1024	Open in IMG/M
3300021402\|Ga0210385_10602313	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300021405\|Ga0210387_10756301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	860	Open in IMG/M
3300021474\|Ga0210390_10300703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1359	Open in IMG/M
3300025627\|Ga0208220_1132327	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300025900\|Ga0207710_10283188	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300025914\|Ga0207671_10659839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	833	Open in IMG/M
3300025915\|Ga0207693_10310825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1234	Open in IMG/M
3300025915\|Ga0207693_10617006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	844	Open in IMG/M
3300025916\|Ga0207663_11233512	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300025923\|Ga0207681_11487659	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300025928\|Ga0207700_10389408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	1220	Open in IMG/M
3300026294\|Ga0209839_10112331	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300026548\|Ga0209161_10276922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	843	Open in IMG/M
3300026555\|Ga0179593_1055044	Not Available	3496	Open in IMG/M
3300027058\|Ga0209111_1033563	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300027096\|Ga0208099_1007803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	1370	Open in IMG/M
3300027696\|Ga0208696_1170859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	697	Open in IMG/M
3300027783\|Ga0209448_10257948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	574	Open in IMG/M
3300027853\|Ga0209274_10279229	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300027879\|Ga0209169_10484568	All Organisms → cellular organisms → Bacteria → Proteobacteria	649	Open in IMG/M
3300027895\|Ga0209624_10443860	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300028562\|Ga0302151_10133267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	861	Open in IMG/M
3300028562\|Ga0302151_10228762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300028906\|Ga0308309_10224973	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1558	Open in IMG/M
3300030494\|Ga0310037_10135901	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300030707\|Ga0310038_10271577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. NBS 14/10	776	Open in IMG/M
3300031713\|Ga0318496_10082886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1703	Open in IMG/M
3300032160\|Ga0311301_10081264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6638	Open in IMG/M
3300032160\|Ga0311301_11073277	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300032160\|Ga0311301_11425313	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300032770\|Ga0335085_10128405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3221	Open in IMG/M
3300032770\|Ga0335085_11365485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	744	Open in IMG/M
3300032783\|Ga0335079_10381377	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300032895\|Ga0335074_10108656	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Terrybacteria → Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15	3630	Open in IMG/M
3300032898\|Ga0335072_10106086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3573	Open in IMG/M
3300032898\|Ga0335072_11241656	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300033134\|Ga0335073_10372477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1682	Open in IMG/M
3300033134\|Ga0335073_11031518	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300033546\|Ga0316213_1015131	Not Available	549	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.15%
Host-Associated	Host-Associated	8.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.11%
Aquatic	Environmental → Aquatic	15.04%
Plants	Host-Associated → Plants	8.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.45%
Freshwater	Environmental → Aquatic → Freshwater	14.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.31%
Peat	Environmental → Terrestrial → Peat	1.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.77%
Roots	Host-Associated → Plants → Roots	1.77%
Sediment	Environmental → Aquatic → Sediment	0.89%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.28%
Loam	Environmental → Terrestrial → Soil → Loam	19.47%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.77%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.39%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.08%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.31%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.39%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.08%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.31%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.31%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.42%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.77%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.77%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.77%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.89%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.89%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027058	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028562	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033546	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE2	Host-Associated	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083146

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_03018860	2170459010	Grass Soil	NTALVFSGIIMIAIIALVLDACLRGLLLLADPSRRR
F62_08196720	2170459010	Grass Soil	MIMQAGDYLNTALVFAGIITIALAGLILDGCLRGLLILADPSRRR
Ga0070709_101795173	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	DYLNTALVFAGIITIAIAGLVLDTGLRGLLMLADPSRRR*
Ga0070709_106092262	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LIMQAGDYLNTALVFSGIITIAILGLILDALLRGLLLLADPSRRR*
Ga0070710_105760192	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GDYLNTALVFSGIIMIAILGLALDACLRGLLLLADPSRRR*
Ga0070711_1019304012	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LIMQAGDYLNTALVFAGIITIAIAGLVLDIGLRGLLILADPSRRR*
Ga0070708_1006610072	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQSGDYPDTALAFAGILTIAVTALILDAALGLLLLAEPGRRG*
Ga0070707_1006750771	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MQSGDYPDTALAFAGSLTIVVTALILDAALRGLLLLAGPGRSG*
Ga0070698_1000268185	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MQSGDYPDTALAFAGTLTIVVTALILDAALRGLLLLAGPGRSG*
Ga0070697_1003902801	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MQSGDYPDTALAFAGSLTIVVTALILDAALRLLLLADPGRRG*
Ga0068855_1024406711	3300005563	Corn Rhizosphere	SQAGNYLDTALVFACIILIAVTELTIDAGLRVLASRVDPSRLASRVG*
Ga0068856_1016703031	3300005614	Corn Rhizosphere	MQAGDYLNTALVFSGIITIAILGLILDACLRGLLLLADPSRRR*
Ga0070766_106652482	3300005921	Soil	TNGVGYLIMQAGDYLNVALVFSGIITIAIMGLALDAGLRGMLYLADPSKRG*
Ga0070766_108865451	3300005921	Soil	LGYLIQQAGDYLNTALVLSGIICIAVIALTLDAGLRGLLLLADPSRRG*
Ga0066790_100925623	3300005995	Soil	LGFVIMQAGDYLDTALVFAGIITIAIAGLALDAGLRGLLLLADPSRRG*
Ga0066790_101736961	3300005995	Soil	QAGDYLNTSLVFAGVITIAIAGLVLDACLRGLLLFVDPSRRS*
Ga0070717_103250742	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MQSGDYPDTALAFAGSLTIAVTALILDAALRLLLLAEPGRRG*
Ga0075028_1010742482	3300006050	Watersheds	NTALVFSGIIMIAILGLVLDACLRGLLLLADPSRRR*
Ga0070716_1005891412	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	TALVFAGIITIALAGLILDGCLRGLLILADPSRRR*
Ga0079222_104405183	3300006755	Agricultural Soil	DYLNTALVFSGIIMIAILGLALDACLRGLLLLADPSRRR*
Ga0079221_100525844	3300006804	Agricultural Soil	MQAGDYLNTALVFSGIIMIAILGLILDACLRGLLLLADPSRRR*
Ga0116214_14404661	3300009520	Peatlands Soil	ALVFSGLICIALIALTLDACIRGLLLLTDPSRRT*
Ga0116218_10070131	3300009522	Peatlands Soil	NIALVFSGLICIALIALTLDACIRGLLLLTDPSRRT*
Ga0105237_102734841	3300009545	Corn Rhizosphere	LIMQAGDYLNTALVFSGIIMIAIIALVLDACLRGLLLLADPSRRR*
Ga0116115_11935012	3300009631	Peatland	GYLIMQAGDYLNTALTLSGIIAIAILGLTLDICLRGLLSLVDPSRRR*
Ga0116134_10014256	3300009764	Peatland	VLRRERALISQADDYLNTSLVFAGIITIAIAGLVLDACLRGLLLWVDPSRRS*
Ga0126373_101254904	3300010048	Tropical Forest Soil	NTALVFAGIITIAGAGLVLDACLRLLLVLADPSRRR*
Ga0126370_117865182	3300010358	Tropical Forest Soil	MQAGDYLNTALVFSGIIAIAILGLVLDACLRGLLLLADPSRRR*
Ga0126379_101020204	3300010366	Tropical Forest Soil	MIMQAGDYLNTALVFAGIITVAVAGLILDCCLRGLLILADPSRRR*
Ga0134125_120153081	3300010371	Terrestrial Soil	QAGDYLNTALVFSGIIMIAIIALVLDACLRGLLLVADPSRRRRQG*
Ga0134128_123996313	3300010373	Terrestrial Soil	DYLNTALVFSGIIMIAIIALVLDACLRGLLLLADPSRRR*
Ga0105239_107450231	3300010375	Corn Rhizosphere	LNTALVFSGIIMIAIIALVLDACLRGLLLLADPSRRR*
Ga0126381_1040017362	3300010376	Tropical Forest Soil	GLGYVIMQAGDYLNTALVFAGIITIAGAGLVLDACLRLLLVLADPSRRR*
Ga0136449_1012066712	3300010379	Peatlands Soil	MQAGDYLDTTLVFAGIITIAITGLALDAGLRGLLILANPSRRG*
Ga0136449_1026866421	3300010379	Peatlands Soil	AATNGLGYLIMQASDYLNTALVFSGIIAIAIVGLILDACLRGLLLLADPSRRR*
Ga0136449_1027328192	3300010379	Peatlands Soil	MQAGDYLNTSLAFSGILMIAILSLALDACIRGLLLIADPSRRS*
Ga0134124_104197673	3300010397	Terrestrial Soil	ALVFAGIITIAIAGLVLDTGLRGLLMLADPSRRR*
Ga0126383_107790261	3300010398	Tropical Forest Soil	PLVFAGIITIAVAGLILDCCLRGLLILADPSRRR*
Ga0151489_15507772	3300011106	Soil	PACAGSLQAGDYMNTALVFSGIITIAILGLVLDACLRGLLLLADPSRRR*
Ga0137364_102728572	3300012198	Vadose Zone Soil	YLIMQAGDYLNTALVFSGIIMIAIIALVLDACLRGLLLLADPSRRR*
Ga0137378_110321252	3300012210	Vadose Zone Soil	AGDYLNTALVFSGIIMIAIIALVLDACLRGLLLLADPSRRR*
Ga0137386_106827811	3300012351	Vadose Zone Soil	GYMIMQAGDYLDTALAFAGIITIAIIALVIDAGLRGLLLLADPGRRG*
Ga0137404_106814182	3300012929	Vadose Zone Soil	IMQAGDYLNTALVFSGIIMIAILGLALDACLRGLLLLADPSRRR*
Ga0164299_115131171	3300012958	Soil	TALVFSGIITIAILGLALDACLRGLLLLADPSRRR*
Ga0126369_113157092	3300012971	Tropical Forest Soil	FMIMQAGDYLNTALVFAGIITIAVAGLILDCCLRGLLILADPSRRR*
Ga0134087_107770022	3300012977	Grasslands Soil	GLGYLIMQAGDYLNTALVFSGIISIAILGLGLDACLRGLLLLADPSRRR*
Ga0157375_112110291	3300013308	Miscanthus Rhizosphere	TALVFSGIIMIAIIALVLDACLRGLLLLADQSRRR*
Ga0181538_106751741	3300014162	Bog	QAGDYLNIALVFSGLICIALIALALDACIRGLLLLTDPSRRT*
Ga0182014_100066202	3300014491	Bog	VLRRERALISQAGDYLNTSLVFAGIITIAFAGLVLDACLRSLLLLVDPSRRS*
Ga0182014_104350602	3300014491	Bog	LGYLIQQAGDYLNTALVFSGIIAIAILGLTLDFSLRGLLVTVDPSRRQ*
Ga0182024_111799971	3300014501	Permafrost	LISQAGDYLNTSLVFAGIITIAIAGLVLDACLRGLLLFVDPSRRS*
Ga0137403_106097101	3300015264	Vadose Zone Soil	GYLIMQAGDYLNTALVFSGIISIAILGLALDACLRGLLLLADPSRRR*
Ga0187807_10140092	3300017926	Freshwater Sediment	MQAGDYLNTALVFSGIIAIAILGLTLDACLRALLLLADPSRRR
Ga0187807_10218041	3300017926	Freshwater Sediment	TTGLGYLIMQAGDYLNTALVFSGIIAIAILGLILDASLRALLLLADPSRRR
Ga0187807_11378161	3300017926	Freshwater Sediment	AGDYLNTALVFSGIIAIAILGLTLDACLRALLLLADPSRRR
Ga0187847_107434271	3300017948	Peatland	YLNTALVFSGIISIAILGLTLDACLRGLLLLADPSRRR
Ga0187847_109066452	3300017948	Peatland	LTKAGLFAMLGNYLNTALVFSGIISIAILGLTLDACLRGLLLLADPSRRR
Ga0187776_113591761	3300017966	Tropical Peatland	MQAGDYLNTALVFAGIITIAVTGLILDTCLRALLVLADPSRRR
Ga0187783_107985371	3300017970	Tropical Peatland	AGDYLDTALVFAGIIMIAVAGLTLDACLRWLLVLADPSRRR
Ga0187781_113385922	3300017972	Tropical Peatland	NTALVFSGIIAIAILGLALDVCLRGLLLIVDPSRRR
Ga0187816_103278282	3300017995	Freshwater Sediment	ATTGLGYLIMQAGDYLNTALVFSGIIAIAILGLALDACLRVLLLLADPSRRR
Ga0187804_101682991	3300018006	Freshwater Sediment	TALVFSGIIAIAILGLTLDACLRGLLLLADPSRRR
Ga0187869_101351691	3300018030	Peatland	VLRRERALISQADDYLNTSLVFAGIITIAIAGLVLDACLRGLLLWVDPSRRS
Ga0187867_105060471	3300018033	Peatland	AGNYLRTSLVFCGIISIGIMGLLLDACLRLLLRWADPARR
Ga0187863_101963543	3300018034	Peatland	LNTALVFSGIISIAILGLTLDACLRGLLLLADPSRRR
Ga0187883_105617831	3300018037	Peatland	LGYLIMQAGDYLNTALVFSGIISIAILGLVLDACLRGLLLLADPSRRR
Ga0187765_101056593	3300018060	Tropical Peatland	DYLNTALVLSGIICIAVIALALDACLRGLLLLADPSRRG
Ga0187765_102590272	3300018060	Tropical Peatland	YLNTALVFAGIITIALAGLILDGCLRGLLILADPSRRR
Ga0187769_105563271	3300018086	Tropical Peatland	YLDTSLVFAGIIMIAVAGLTLDACLRWLLVLADPSRRR
Ga0187852_13206951	3300019082	Peatland	DYLNTALVLSGIICIALIALVLDACIRGLLLLADPSRRG
Ga0193724_11201441	3300020062	Soil	MQAGDYLDTALVFAGIITIAIAGLVLDAGLRGLLLLADPSRRG
Ga0210395_107501642	3300020582	Soil	NTALVFSGIIAIAILGLTLDACLRGLLLLADPSRRR
Ga0213881_104363221	3300021374	Exposed Rock	NMSIVFAGIITIAVAGLLLDACLRGLLLVADPSRRS
Ga0213874_100863672	3300021377	Plant Roots	MIMQAGDYLDTALVFAGIIMIAAAGLTLDACLRWLLILADPSRRR
Ga0210385_106023131	3300021402	Soil	ATSGVGYLISQAGDFLDMSIVFAGIIAIAIVGLALDAGLRGLLLLADPSRRS
Ga0210387_107563012	3300021405	Soil	MQAGDYLNTALVFSGIIMIAILGLVLDACLRGLLLLADPSRRR
Ga0210390_103007031	3300021474	Soil	GDYLNTALVFSGILSIAILGLVLDACLRGLLLLADPSRRG
Ga0208220_11323272	3300025627	Arctic Peat Soil	IMQAGDYLNTALVFAGIITIAILGLALDAGLRGLLVLADPSRRR
Ga0207710_102831881	3300025900	Switchgrass Rhizosphere	IMQAGDYLNTALVFAGIITIAIAGLVLDTGLRGLLMLADPSRRR
Ga0207671_106598391	3300025914	Corn Rhizosphere	MQAGDYLNTALVFSGIIMIAIIALVLDACLRGLLLLADPSRRR
Ga0207693_103108251	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GDYLNTALVFSGIITIAILGLALDACLRGLLLLADPSRRR
Ga0207693_106170062	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	IMQAGDYLNTALVFSGIITIAILGLILDALLRGLLLLADPSRRR
Ga0207663_112335122	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	GDYLNTALVFSGIIMIAIIALVLDACLRGLLLLADPSRRR
Ga0207681_114876591	3300025923	Switchgrass Rhizosphere	MQAGDYLNTALVFSGIIMIAIIALVLDAWLRGLLLLADPSRRR
Ga0207700_103894082	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MQAGDYLNTSLVFAGIIMIAILGLALDACLRGLLLLADPAGTQ
Ga0209839_101123312	3300026294	Soil	QAGDYLNTSLVFAGVITIAIAGLVLDACLRGLLLFVDPSRRS
Ga0209161_102769222	3300026548	Soil	IMQAGDYLNTALVFSGIIMIAIIALVLDACLRGLLLLADPSRRR
Ga0179593_10550443	3300026555	Vadose Zone Soil	MQAGDYLDTALVFAGIITIAIAGLVLDACLRGLLIAADPSRRG
Ga0209111_10335631	3300027058	Forest Soil	MQAGDYLNTALVFSGIIMIAILGLALDACLRGLLLLADPSRRR
Ga0208099_10078033	3300027096	Forest Soil	IMQAGDYLNTALVFSGILSIAILGLVLDACLRGLLLLADPSRRG
Ga0208696_11708591	3300027696	Peatlands Soil	AATTGLGYLIMQAGDYLNTALVFSGIIAIAILGLALDACLRVLLLLADPSRRR
Ga0209448_102579481	3300027783	Bog Forest Soil	LGYLIMQAGDYLNTALVFSGIIMIAILGLALDACLRGLLLLADPSRRR
Ga0209274_102792292	3300027853	Soil	QAGDYLNTALVLSGIICIAVIALTLDACLRGLLLLADPSRRG
Ga0209169_104845681	3300027879	Soil	LIMQAGDYLNVALVFSGIITIAIMGLALDAGLRGMLYLADPSKRG
Ga0209624_104438603	3300027895	Forest Soil	GDYLNTALVLSGIICIAVIALILDACLRGLLLLADPSRRG
Ga0302151_101332671	3300028562	Bog	TSLVFAGIITIAIAGLVLDACLRGLLLFVDPSRRS
Ga0302151_102287621	3300028562	Bog	AGDYLNTALVLSGIICIALIALVLDACIRGLLLLADPSRRG
Ga0308309_102249732	3300028906	Soil	YLIGQAGDYLNIALVFSGLICIALIALTLDACIRGLLLLTDPSRRT
Ga0310037_101359013	3300030494	Peatlands Soil	YLNIALVFSGLICIALIALTLDACIRGLLLLTDPSRRT
Ga0310038_102715772	3300030707	Peatlands Soil	YLNTALVFSGIIAIAILGLALDACLRVLLLLADPSRRR
Ga0318496_100828861	3300031713	Soil	LNTALVFSGIIMIAILGLVLDACLRGLLLLADPSRRR
Ga0311301_100812649	3300032160	Peatlands Soil	LNIALVFSGLICIALIALTLDACIRGLLLLTDPSRRT
Ga0311301_110732772	3300032160	Peatlands Soil	MQAGDYLDTALVFAGIITIAITGLALDAGLRGLLILADPSRRG
Ga0311301_114253131	3300032160	Peatlands Soil	AGDYLNTALVFSGIICIALIALALDACIRGLLLLADPSRRG
Ga0335085_101284052	3300032770	Soil	MIMQAGDYLNTALVFAGIIMIALAGLILDGCLRGLLILADPSRRR
Ga0335085_113654853	3300032770	Soil	MIMQAGDYLNTALVFAGIIMIALAGLILDGCLRGLLVLADPSRRR
Ga0335079_103813773	3300032783	Soil	MIMQAGDYLNTALVFAGIITIALAGLILDGCLRGLLVLADPSRRR
Ga0335074_101086562	3300032895	Soil	MQAGDYLNTALVFSGIIAIAILGLALDACLRGLLLLADPSRRG
Ga0335072_101060865	3300032898	Soil	DYLDTALVFAGILVIAVTALVIDVGLRGLLLLADPSRRG
Ga0335072_112416561	3300032898	Soil	YLIMQAGDYLNTALVFSGIIMIAILGLALDACLRGLLLLADPSRRR
Ga0335073_103724771	3300033134	Soil	TNGVGYLIMQAGDYLNVALVFSGIIAIAIMGLTLDACLRGLLYLADPSKRQ
Ga0335073_110315182	3300033134	Soil	TALVFSGIIMIAILGLALDACLRGLLLLADPSRRR
Ga0316213_10151311	3300033546	Roots	AGDYLNTALVFSGIIAIAIVALILDACLRGLLLLADPGRRG

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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