Metagenome / Metatranscriptome Family F083046

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F083046
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	75 residues
Representative Sequence	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Number of Associated Samples	73
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.76 %
% of genes near scaffold ends (potentially truncated)	40.71 %
% of genes from short scaffolds (< 2000 bps)	86.73 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (51.327 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.009 % of family members)
Environment Ontology (ENVO)	Unclassified (42.478 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.407 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.96% β-sheet: 31.17% Coil/Unstructured: 29.87%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13467	RHH_4	6.19
PF04299	FMN_bind_2	5.31
PF03401	TctC	2.65
PF01594	AI-2E_transport	2.65
PF04392	ABC_sub_bind	1.77
PF00816	Histone_HNS	1.77
PF00239	Resolvase	1.77
PF03734	YkuD	0.88
PF06778	Chlor_dismutase	0.88
PF12681	Glyoxalase_2	0.88
PF02735	Ku	0.88
PF02796	HTH_7	0.88
PF06769	YoeB_toxin	0.88
PF00589	Phage_integrase	0.88
PF13565	HTH_32	0.88
PF04226	Transgly_assoc	0.88
PF12796	Ank_2	0.88
PF14659	Phage_int_SAM_3	0.88
PF01243	Putative_PNPOx	0.88
PF05509	TraY	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	2.65
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.65
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.77
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.77
COG2916	DNA-binding protein H-NS	Transcription [K]	1.77
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.77
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.88
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.88
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3253	Coproheme decarboxylase/chlorite dismutase	Coenzyme transport and metabolism [H]	0.88
COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	Defense mechanisms [V]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
All Organisms	root	All Organisms	48.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
cellular organisms	root	All Organisms → cellular organisms	48.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.20 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.12 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	9.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.19 %
candidate division TA06	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.65 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.88 %
candidate division TA06 bacterium SM23_40	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium SM23_40	0.88 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Beijerinckia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia	0.88 %
candidate division TA06 bacterium SM23_40	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium SM23_40	0.88 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Beijerinckia indica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → Beijerinckia indica	0.88 %
candidate division TA06 bacterium SM23_40	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium SM23_40	0.88 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Beijerinckia indica subsp. indica	subspecies	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → Beijerinckia indica → Beijerinckia indica subsp. indica	0.88 %
candidate division TA06 bacterium SM23_40	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium SM23_40	0.88 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Beijerinckia indica subsp. indica ATCC 9039	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → Beijerinckia indica → Beijerinckia indica subsp. indica → Beijerinckia indica subsp. indica ATCC 9039	0.88 %
candidate division TA06 bacterium SM23_40	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium SM23_40	0.88 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1037914	Not Available	742	Open in IMG/M
3300000156\|NODE_c0715529	All Organisms → cellular organisms → Bacteria	5211	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1054703	Not Available	584	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10041075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1224	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1013461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1558	Open in IMG/M
3300001431\|F14TB_100720179	All Organisms → cellular organisms → Bacteria → Proteobacteria	1426	Open in IMG/M
3300004114\|Ga0062593_103478549	Not Available	505	Open in IMG/M
3300004633\|Ga0066395_10177072	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300005332\|Ga0066388_100124164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3112	Open in IMG/M
3300005332\|Ga0066388_100883679	All Organisms → cellular organisms → Bacteria → Proteobacteria	1474	Open in IMG/M
3300005332\|Ga0066388_100936565	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium SM23_40	1439	Open in IMG/M
3300005332\|Ga0066388_101143980	Not Available	1323	Open in IMG/M
3300005332\|Ga0066388_102238337	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300005332\|Ga0066388_103799822	Not Available	770	Open in IMG/M
3300005332\|Ga0066388_105522007	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005332\|Ga0066388_108427251	Not Available	514	Open in IMG/M
3300005713\|Ga0066905_100166292	Not Available	1609	Open in IMG/M
3300005713\|Ga0066905_102034465	Not Available	533	Open in IMG/M
3300005713\|Ga0066905_102082609	Not Available	527	Open in IMG/M
3300005713\|Ga0066905_102255061	Not Available	508	Open in IMG/M
3300005764\|Ga0066903_100864858	All Organisms → cellular organisms → Bacteria	1629	Open in IMG/M
3300005764\|Ga0066903_101370758	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300005764\|Ga0066903_102374285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1025	Open in IMG/M
3300005764\|Ga0066903_102785976	Not Available	948	Open in IMG/M
3300005764\|Ga0066903_103532198	Not Available	842	Open in IMG/M
3300005764\|Ga0066903_104019852	Not Available	788	Open in IMG/M
3300005764\|Ga0066903_105389967	Not Available	675	Open in IMG/M
3300005764\|Ga0066903_105551264	Not Available	664	Open in IMG/M
3300005764\|Ga0066903_108770992	Not Available	514	Open in IMG/M
3300005937\|Ga0081455_10013264	All Organisms → cellular organisms → Bacteria → Proteobacteria	8162	Open in IMG/M
3300005937\|Ga0081455_10065246	Not Available	3046	Open in IMG/M
3300006038\|Ga0075365_10023556	All Organisms → cellular organisms → Bacteria → Proteobacteria	3873	Open in IMG/M
3300006175\|Ga0070712_100756883	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300006605\|Ga0074057_10353420	Not Available	739	Open in IMG/M
3300006845\|Ga0075421_102512538	Not Available	536	Open in IMG/M
3300009792\|Ga0126374_10139642	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300010043\|Ga0126380_10348313	Not Available	1077	Open in IMG/M
3300010043\|Ga0126380_11623425	Not Available	578	Open in IMG/M
3300010046\|Ga0126384_10699765	Not Available	898	Open in IMG/M
3300010047\|Ga0126382_10107101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1821	Open in IMG/M
3300010047\|Ga0126382_10500495	Not Available	976	Open in IMG/M
3300010047\|Ga0126382_11447199	Not Available	629	Open in IMG/M
3300010048\|Ga0126373_10896549	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300010358\|Ga0126370_10215894	Not Available	1461	Open in IMG/M
3300010358\|Ga0126370_10255062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1363	Open in IMG/M
3300010359\|Ga0126376_10061359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2707	Open in IMG/M
3300010360\|Ga0126372_11108639	Not Available	810	Open in IMG/M
3300010361\|Ga0126378_10457885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1390	Open in IMG/M
3300010361\|Ga0126378_11251913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → Beijerinckia indica → Beijerinckia indica subsp. indica → Beijerinckia indica subsp. indica ATCC 9039	838	Open in IMG/M
3300010376\|Ga0126381_100711492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1437	Open in IMG/M
3300010376\|Ga0126381_104814666	Not Available	519	Open in IMG/M
3300010398\|Ga0126383_10750378	Not Available	1057	Open in IMG/M
3300011270\|Ga0137391_11038773	Not Available	666	Open in IMG/M
3300012469\|Ga0150984_103822587	Not Available	1298	Open in IMG/M
3300012948\|Ga0126375_10346804	Not Available	1051	Open in IMG/M
3300012948\|Ga0126375_11199326	Not Available	631	Open in IMG/M
3300012971\|Ga0126369_10951475	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300015371\|Ga0132258_10397878	All Organisms → cellular organisms → Bacteria → Proteobacteria	3421	Open in IMG/M
3300015371\|Ga0132258_10957166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2163	Open in IMG/M
3300015371\|Ga0132258_10999233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2114	Open in IMG/M
3300015371\|Ga0132258_13455268	Not Available	1083	Open in IMG/M
3300015372\|Ga0132256_102620446	Not Available	604	Open in IMG/M
3300015374\|Ga0132255_102569621	Not Available	778	Open in IMG/M
3300015374\|Ga0132255_103391465	Not Available	678	Open in IMG/M
3300016270\|Ga0182036_10956782	Not Available	704	Open in IMG/M
3300016270\|Ga0182036_11798680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300016319\|Ga0182033_10446564	Not Available	1102	Open in IMG/M
3300016319\|Ga0182033_10785383	Not Available	838	Open in IMG/M
3300016387\|Ga0182040_10289302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1248	Open in IMG/M
3300021560\|Ga0126371_10217853	All Organisms → cellular organisms → Bacteria	2011	Open in IMG/M
3300025939\|Ga0207665_10700766	Not Available	796	Open in IMG/M
3300026551\|Ga0209648_10140414	Not Available	1922	Open in IMG/M
3300027909\|Ga0209382_11639565	Not Available	634	Open in IMG/M
3300031170\|Ga0307498_10026567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1383	Open in IMG/M
3300031226\|Ga0307497_10009858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2680	Open in IMG/M
3300031543\|Ga0318516_10214093	Not Available	1114	Open in IMG/M
3300031543\|Ga0318516_10323347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	891	Open in IMG/M
3300031561\|Ga0318528_10481517	Not Available	666	Open in IMG/M
3300031564\|Ga0318573_10229722	Not Available	987	Open in IMG/M
3300031564\|Ga0318573_10326702	Not Available	822	Open in IMG/M
3300031564\|Ga0318573_10810610	Not Available	503	Open in IMG/M
3300031680\|Ga0318574_10706607	Not Available	591	Open in IMG/M
3300031744\|Ga0306918_10006226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6433	Open in IMG/M
3300031751\|Ga0318494_10534175	Not Available	684	Open in IMG/M
3300031768\|Ga0318509_10022503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2971	Open in IMG/M
3300031771\|Ga0318546_10221543	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300031799\|Ga0318565_10558881	Not Available	551	Open in IMG/M
3300031805\|Ga0318497_10477410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300031821\|Ga0318567_10159834	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300031845\|Ga0318511_10179235	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300031879\|Ga0306919_10527898	All Organisms → cellular organisms → Bacteria → Proteobacteria	910	Open in IMG/M
3300031879\|Ga0306919_10605236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	845	Open in IMG/M
3300031890\|Ga0306925_10914094	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300031896\|Ga0318551_10194065	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300031912\|Ga0306921_11695621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	683	Open in IMG/M
3300031941\|Ga0310912_10013376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5256	Open in IMG/M
3300031941\|Ga0310912_10988574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645	Open in IMG/M
3300031947\|Ga0310909_10510745	Not Available	1007	Open in IMG/M
3300031954\|Ga0306926_10533550	Not Available	1439	Open in IMG/M
3300031954\|Ga0306926_11474346	Not Available	786	Open in IMG/M
3300032001\|Ga0306922_10392626	All Organisms → cellular organisms → Bacteria → Proteobacteria	1486	Open in IMG/M
3300032042\|Ga0318545_10364101	Not Available	521	Open in IMG/M
3300032055\|Ga0318575_10098787	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300032060\|Ga0318505_10615542	Not Available	510	Open in IMG/M
3300032066\|Ga0318514_10060390	All Organisms → cellular organisms → Bacteria	1854	Open in IMG/M
3300032066\|Ga0318514_10332231	Not Available	804	Open in IMG/M
3300032076\|Ga0306924_10177262	All Organisms → cellular organisms → Bacteria → Proteobacteria	2445	Open in IMG/M
3300032076\|Ga0306924_10362946	All Organisms → cellular organisms → Bacteria	1660	Open in IMG/M
3300032090\|Ga0318518_10213781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	988	Open in IMG/M
3300032091\|Ga0318577_10242760	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300032094\|Ga0318540_10060056	All Organisms → cellular organisms → Bacteria	1726	Open in IMG/M
3300032174\|Ga0307470_11352553	Not Available	586	Open in IMG/M
3300032205\|Ga0307472_101836184	Not Available	603	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.61%
Host-Associated	Host-Associated	11.50%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.61%
Plants	Host-Associated → Plants	11.50%
Solid Waste	Engineered → Solid Waste	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.54%
Roots	Host-Associated → Plants → Roots	0.89%
Grass	Engineered → Solid Waste → Grass	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.49%
Loam	Environmental → Terrestrial → Soil → Loam	22.12%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.77%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.89%
Composting	Engineered → Solid Waste → Grass → Composting	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.89%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	19.47%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.27%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_10379142	2228664022	Soil	MTLKVQYLTKLEDXTQIQAGWYVTTPFCPGVVFATEQEALXYGRTEELRQELMDRVRAMSFDELHALKVKMT
NODE_07155294	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVNMT*
AP72_2010_repI_A01DRAFT_10547031	3300000579	Forest Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRAL
AF_2010_repII_A1DRAFT_100410751	3300000597	Forest Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALK
AF_2010_repII_A100DRAFT_10134614	3300000655	Forest Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVTMT*
F14TB_1007201793	3300001431	Soil	MTLKVQYLTKLEDGTQIQAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVNMT*
Ga0062593_1034785492	3300004114	Soil	MTLNVQYLTELEGGTQIQAGWYVTTPFCPGMVFATEQEALVYGRTEELRQKLIARVRAMSLNELRALESEDELMQGRAEG*
Ga0066395_101770722	3300004633	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT*
Ga0066388_1001241641	3300005332	Tropical Forest Soil	MTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKV
Ga0066388_1008836792	3300005332	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGMVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKIT*
Ga0066388_1009365651	3300005332	Tropical Forest Soil	QYLTKLEEGTQIPAGWYVTTPFCPGVVFASEQEALAYGRTEELRQELMDRVRAMSLDELRALKVKMT*
Ga0066388_1011439801	3300005332	Tropical Forest Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELLALK
Ga0066388_1022383371	3300005332	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDEL
Ga0066388_1037998221	3300005332	Tropical Forest Soil	MTLKVQYLTKLEDGTQIQAGWCVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDEL
Ga0066388_1055220072	3300005332	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQITAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT*
Ga0066388_1084272512	3300005332	Tropical Forest Soil	WVNMEMTTMTLKVQYLTKLEDGTQIPAGWYVTTPFCPGVVFATEQEAVAYGRTEELRQELMDRVRAMSSDELHVLKVKMI*
Ga0066905_1001662921	3300005713	Tropical Forest Soil	MEMTTMTLKIQYLTKLEDGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRAL
Ga0066905_1020344652	3300005713	Tropical Forest Soil	MEMTTMTLKVQYLTKLEDGTQIQAGWYVTTPFCPEVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALK
Ga0066905_1020826092	3300005713	Tropical Forest Soil	MEMTTMQVQYLTKLEDGTQIPAGWYVTTPYCPGVVFATEQEALAYGRTEELRQGLMDRLRAMSFQELRALKMKMS*
Ga0066905_1022550612	3300005713	Tropical Forest Soil	VNMEMTTMTLKVQYLTKLEDGTQIQAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSSDELHALKVKMT*
Ga0066903_1008648582	3300005764	Tropical Forest Soil	MTLKVQYLTKLEDGTQMEAGWYVTTPFCPEVVFATEQEALAYGRTEELRQNLMDRVRTMSFDELSALKVKMT*
Ga0066903_1013707581	3300005764	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQQLMDQVRAMSFDELRALKVKMT*
Ga0066903_1023742852	3300005764	Tropical Forest Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPWCPEVVFATEQEALAYGRTEELRQELIDRVRAMSFDELRALKVKMT*
Ga0066903_1027859762	3300005764	Tropical Forest Soil	MEMTTMTLKVQYLTRLEDGTQIPAGWYVTTPFCPGVVFATEQEAVAYGRTEELRQELIDRVRAMSSDELRALKVKIT*
Ga0066903_1035321982	3300005764	Tropical Forest Soil	MEMTTMTLKVQHLTKLEDGTQIQAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSSDELHALKVKMT*
Ga0066903_1040198523	3300005764	Tropical Forest Soil	NMEMKTMTLQVQYLTKLEDGTQIPAGWYVTTPFCPGLVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKMKMS*
Ga0066903_1053899672	3300005764	Tropical Forest Soil	TKLEDGTQIRAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRVLKVKMT*
Ga0066903_1055512641	3300005764	Tropical Forest Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRARAMSFDELRALKVQMT*
Ga0066903_1087709921	3300005764	Tropical Forest Soil	MEMKTMTLQVQYLTKLEDGMQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMNFDELHALK
Ga0081455_100132641	3300005937	Tabebuia Heterophylla Rhizosphere	MEMTTMTLKVQYLTKLEDGTQIQAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKMKVS*
Ga0081455_100652461	3300005937	Tabebuia Heterophylla Rhizosphere	MEMKTMTLQVQYLTKLEDGTQIPAGWYVTTPYCPGVVFATEQEAPAYGRTEELRQELMDRVRAM
Ga0075365_100235566	3300006038	Populus Endosphere	MEMTTMTLKVQYLTKLEDGTQIQAGWYVTTPFCPEVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT*
Ga0070712_1007568832	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTLKVQHLTKLEDGTQIRAGWYVTTPFCPQVVFATEQEALAYGRTEELRQELLDRVRAMGFDELRALKVTMT*
Ga0074057_103534202	3300006605	Soil	MEMTTMTLQVQYLTKLEDGTQMTAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSSDELRALKVKMT*
Ga0075421_1025125381	3300006845	Populus Rhizosphere	LTKLEDGTQIQAGWYVTTPFCPEVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT*
Ga0126374_101396421	3300009792	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVK
Ga0126380_103483133	3300010043	Tropical Forest Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT*
Ga0126380_116234251	3300010043	Tropical Forest Soil	KICSSKPSNGPTLPDAILRRQQAITRWVNMEMTTMTLKVQHMTKLEDGTQIPAGWYVTTPFCPGVVFATEQEAVAYGRTEELRQELIDRVRAMSSDELRTLKVKIT*
Ga0126384_106997652	3300010046	Tropical Forest Soil	MQLSIVQAITRWVNMEVTTMTLKVQYLTKLEGGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT*
Ga0126382_101071011	3300010047	Tropical Forest Soil	MEMTTMTLKVQHLTKLEDGTQIQAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKV
Ga0126382_105004951	3300010047	Tropical Forest Soil	VNMEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT*
Ga0126382_114471991	3300010047	Tropical Forest Soil	VNMEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGMVFATEQEALAYGRAEELRQELMDRVRAMSFDELCALKVKMT*
Ga0126373_108965491	3300010048	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELCALKVKMT*
Ga0126370_102158942	3300010358	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATGQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT*
Ga0126370_102550623	3300010358	Tropical Forest Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALK
Ga0126376_100613593	3300010359	Tropical Forest Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVQMT*
Ga0126372_111086391	3300010360	Tropical Forest Soil	MEMTTMTLKVQYLTKLEDGTQIQAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT*
Ga0126378_104578851	3300010361	Tropical Forest Soil	MEMTTMTLKVQYLTRLEGDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVQMT*
Ga0126378_112519132	3300010361	Tropical Forest Soil	MGMTTMTLKVQYLTKLEDGTQIQAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELIDRVRAMSFDELHALNVKMT*
Ga0126381_1007114921	3300010376	Tropical Forest Soil	MEMTTMTLKVQYLTKLEDGTQMQAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRA
Ga0126381_1048146661	3300010376	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKV
Ga0126383_107503781	3300010398	Tropical Forest Soil	LTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT*
Ga0137391_110387732	3300011270	Vadose Zone Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPAVVFATEQEALAYGRTEELRQELMDRVRAMSFDELCALKVNMT*
Ga0150984_1038225872	3300012469	Avena Fatua Rhizosphere	MDMTKMTLKVQYLTQLEGDTQIQAGWYVTTPYCPGVVFATEQEALAYGRTEELRQELINRVRALSFDELRALKMKMT*
Ga0126375_103468041	3300012948	Tropical Forest Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFEELRAPAGLFAAAL*
Ga0126375_111993262	3300012948	Tropical Forest Soil	MEMTTMTLQVQYLTKLEDGTQIQAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSSDELHALKVKMT*
Ga0126369_109514752	3300012971	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKM
Ga0132258_103978783	3300015371	Arabidopsis Rhizosphere	MEMTPMTLKVQHLTKLEGGTQIQAGWYVTTPYCPEVVFATEQEALAYRRTEELRQELIDRVRAMGFNELRALTVKMT*
Ga0132258_109571662	3300015371	Arabidopsis Rhizosphere	MTTMTLKVQYLTKLEGGTQIQAGWYVTTPYCPEVVFATEQEALAYGRTEELRQELINRVRTMSFDELRALKVKMT*
Ga0132258_109992332	3300015371	Arabidopsis Rhizosphere	MTTMTLQVRYLTNLEDGTRIEAGWYVTTPFCSGVVFATEQGALAYGRTEELRQELMDRVRAMSFDELRALEVKMS*
Ga0132258_134552682	3300015371	Arabidopsis Rhizosphere	MEMMTMTLKVQYLTKLEDGTQIQAGWYVTTPFCPGVVFATEQEALVYGRTEELRQELMDRVRAMSFDELHALKVKMT*
Ga0132256_1026204462	3300015372	Arabidopsis Rhizosphere	MEMTAMTLKVQHLTKLEGGTQIQAGWYVTTPYCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKMKMS*
Ga0132255_1025696211	3300015374	Arabidopsis Rhizosphere	MEMTTMTLKVQYLTKLEDGAQIPPGWYVTTPFCPGVVFATEQEALVYGRTEELRQELMDRVRAMSFDELHALKVKMT*
Ga0132255_1033914652	3300015374	Arabidopsis Rhizosphere	MEMTTMTLKVQYLTKLEDGTQIQAGWYVTTPFCPEVFATEQEALAYGRTEELRQELMDRVRAMSSDELRALKVQMT*
Ga0182036_109567821	3300016270	Soil	RWVNMEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSLDELRALKVKLT
Ga0182036_117986802	3300016270	Soil	MPLKVQYLTKLEGGTQIRAGWYVTTAFCAEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMV
Ga0182033_104465642	3300016319	Soil	MEMTTMTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMVAPGVASQKS
Ga0182033_107853832	3300016319	Soil	MTLEVQYLTKLEDGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0182040_102893021	3300016387	Soil	MEMTTMTLNVQYVTKLEDDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVK
Ga0126371_102178533	3300021560	Tropical Forest Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0207665_107007661	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MEMTTMTLKVQYLTKLEGGTQIQAGWHVTTPFCPGVVFATEQEALAYGRTEELRQELINRVRAMSFDELRALKVKMTEVIE
Ga0209648_101404144	3300026551	Grasslands Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPAVVFATEQEALAYGRTEELRQELMDRVRAMSFDELCALKVNMT
Ga0209382_116395651	3300027909	Populus Rhizosphere	MEMTTMTLKVQYLTKLEDGTQIQAGWYVTTPFCPEVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0307498_100265673	3300031170	Soil	MEMTTMTLQVQYLTKLEDGTQMTAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSSDELRALKVKMT
Ga0307497_100098585	3300031226	Soil	MEMTTMTLQVQYLTKLEDGTQIQAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSSDELRALKVKMT
Ga0318516_102140931	3300031543	Soil	MEMTTMTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0318516_103233472	3300031543	Soil	MEMTTMTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATKQEALAYGRTEELRQELMDRVRAMSFGLSAG
Ga0318528_104815171	3300031561	Soil	SVVDDPKRVEGAITRWVNMEMTTMTLKVQYLTKLEDSTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0318573_102297221	3300031564	Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKIT
Ga0318573_103267021	3300031564	Soil	YLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSLDELRALKVKMT
Ga0318573_108106101	3300031564	Soil	TTMTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0318574_107066071	3300031680	Soil	MTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSLDELRALKVKMT
Ga0306918_100062261	3300031744	Soil	MEMTTMTLNVQYLTKLEDDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0318494_105341751	3300031751	Soil	MEMTTMTLNVQYLTKLEDDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELSQELMDRVRAMSFDELRALE
Ga0318509_100225031	3300031768	Soil	MEMTTMTLNVQYLTKLEDDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELSQELMDRVRAMSFDELR
Ga0318546_102215432	3300031771	Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSLDELRALKVKMT
Ga0318565_105588811	3300031799	Soil	NMEMTTMTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELFALKVKMT
Ga0318497_104774101	3300031805	Soil	MPLKVQYLTKLEGGTQIRAGWYVTTAFCAEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALEVKMS
Ga0318567_101598343	3300031821	Soil	MEMTTMTLNVQYLTKLEDDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELSQELMDRVRAMSFDELRALEVKMS
Ga0318511_101792351	3300031845	Soil	MEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSLDELRALKVKLT
Ga0306919_105278982	3300031879	Soil	MEMTTMTLNVQYLTKLEDDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALEVKMS
Ga0306919_106052362	3300031879	Soil	MPLKVQYLTKLEDSTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMVAPGVASQKS
Ga0306925_109140942	3300031890	Soil	MEMTTMTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMTR
Ga0318551_101940651	3300031896	Soil	MEMTTMALKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSLDELRALKVKMT
Ga0306921_116956212	3300031912	Soil	MPLKVQYLTKLEGGTQIRAGWYVTTAFCAEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMVAPGVASQKS
Ga0310912_100133761	3300031941	Soil	MEMTTMTLNVQYLTKLEDDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVK
Ga0310912_109885741	3300031941	Soil	MPLKVQYLTKLEGGTQIRAGWYVTTAFCAEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMVAP
Ga0310909_105107452	3300031947	Soil	MEMTTMTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELFALKVKMT
Ga0306926_105335501	3300031954	Soil	YLTKLEDSTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0306926_114743461	3300031954	Soil	MEMTTMTLQVQYLTKLEDGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELIDRVRAMSVDELHAFKVKMT
Ga0306922_103926261	3300032001	Soil	MEMTTMTLKVQYLTKLEDGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0318545_103641011	3300032042	Soil	MEMTTMTLKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALEVKMS
Ga0318575_100987871	3300032055	Soil	YLTKLEDDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0318505_106155422	3300032060	Soil	LTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0318514_100603905	3300032066	Soil	MEMTTMTLNVQYLTKLEDDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSF
Ga0318514_103322312	3300032066	Soil	MPLKVQYLTKLEGGTQIRAGWYVTTAFCAEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMVAPGVA
Ga0306924_101772621	3300032076	Soil	LKVQYLTKLEEGTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAMSFDELFALKVKMT
Ga0306924_103629461	3300032076	Soil	MEMTTMALKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSFDELRALKVKMT
Ga0318518_102137812	3300032090	Soil	MEMTTMTLRVQYLTKLEDGTQIQAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDQVRAMSFDELRALKVKIT
Ga0318577_102427602	3300032091	Soil	RWVNMEMTTMTLKVQYLTKLEEGTQIPAGWYVTTPFCPGVVFATEQEALAYGRTEELRQELMDRVRAMSLDELRALKVKMT
Ga0318540_100600561	3300032094	Soil	MEMTTMTLNVQYLTKLEDDTQIRAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELMDRVRAM
Ga0307470_113525531	3300032174	Hardwood Forest Soil	MEMTTMTLKVQYLTKLEGDTQIQAGWYVTTPFCPEVVFATEQEALAYGRTEELRQELINRVRAMSFDELRALKVKMT
Ga0307472_1018361841	3300032205	Hardwood Forest Soil	MEMTTMTLKVQYLTKLEGDTQIQAGWYVTTPFCPEVVFATEQEALAYGHTEELRQELINRVRAMSFDELRALKVKMT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083046

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences