Metagenome / Metatranscriptome Family F082972

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082972
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	40 residues
Representative Sequence	EYHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAERRA
Number of Associated Samples	103
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.87 %
% of genes near scaffold ends (potentially truncated)	90.27 %
% of genes from short scaffolds (< 2000 bps)	90.27 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.487 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.938 % of family members)
Environment Ontology (ENVO)	Unclassified (40.708 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (41.593 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.29% β-sheet: 0.00% Coil/Unstructured: 55.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00571	CBS	39.82
PF07171	MlrC_C	8.85
PF02515	CoA_transf_3	7.96
PF00903	Glyoxalase	5.31
PF01042	Ribonuc_L-PSP	2.65
PF07364	DUF1485	2.65
PF13669	Glyoxalase_4	2.65
PF00296	Bac_luciferase	1.77
PF07883	Cupin_2	1.77
PF04964	Flp_Fap	1.77
PF00294	PfkB	1.77
PF00561	Abhydrolase_1	0.88
PF12833	HTH_18	0.88
PF03466	LysR_substrate	0.88
PF00857	Isochorismatase	0.88
PF00291	PALP	0.88
PF13683	rve_3	0.88
PF12681	Glyoxalase_2	0.88
PF03235	DUF262	0.88
PF00378	ECH_1	0.88
PF14579	HHH_6	0.88
PF01842	ACT	0.88
PF02371	Transposase_20	0.88
PF00475	IGPD	0.88
PF00496	SBP_bac_5	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG5476	Microcystin degradation protein MlrC, contains DUF1485 domain	General function prediction only [R]	11.50
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	7.96
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	2.65
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.77
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	1.77
COG0131	Imidazoleglycerol phosphate dehydratase HisB	Amino acid transport and metabolism [E]	0.88
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.88
COG1479	DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domains	Defense mechanisms [V]	0.88
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.49 %
Unclassified	root	N/A	34.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.49 %
Unclassified	root	N/A	34.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.49 %
Unclassified	root	N/A	34.51 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	38.05 %
Unclassified	root	N/A	34.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.16 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.42 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.65 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.73 %
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	4.42 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.77 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.77 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.88 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.73 %
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	4.42 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.77 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.73 %
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	4.42 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.88 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.88 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100246285	Not Available	1676	Open in IMG/M
3300004080\|Ga0062385_10599054	Not Available	696	Open in IMG/M
3300005181\|Ga0066678_10837477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300005435\|Ga0070714_101686899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300005439\|Ga0070711_101687198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	555	Open in IMG/M
3300005445\|Ga0070708_101314963	Not Available	675	Open in IMG/M
3300005467\|Ga0070706_100776835	Not Available	887	Open in IMG/M
3300005556\|Ga0066707_11007749	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300005557\|Ga0066704_10449281	Not Available	852	Open in IMG/M
3300005563\|Ga0068855_102116890	Not Available	566	Open in IMG/M
3300006903\|Ga0075426_11389712	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300006904\|Ga0075424_100765809	Not Available	1030	Open in IMG/M
3300006954\|Ga0079219_10846023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	728	Open in IMG/M
3300009143\|Ga0099792_10257175	Not Available	1019	Open in IMG/M
3300010048\|Ga0126373_11668497	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300010358\|Ga0126370_11504430	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300010359\|Ga0126376_13171477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300010371\|Ga0134125_12978508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	514	Open in IMG/M
3300010376\|Ga0126381_100384582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1950	Open in IMG/M
3300011120\|Ga0150983_12780905	Not Available	522	Open in IMG/M
3300012202\|Ga0137363_11388183	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300012206\|Ga0137380_10879151	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300012207\|Ga0137381_10538754	Not Available	1018	Open in IMG/M
3300012285\|Ga0137370_10394935	All Organisms → cellular organisms → Bacteria → Proteobacteria	837	Open in IMG/M
3300012363\|Ga0137390_10803768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	898	Open in IMG/M
3300012922\|Ga0137394_11215193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300012929\|Ga0137404_10681957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	928	Open in IMG/M
3300012972\|Ga0134077_10571465	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300015374\|Ga0132255_105301709	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300016270\|Ga0182036_11893100	Not Available	506	Open in IMG/M
3300016294\|Ga0182041_11362091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300016319\|Ga0182033_10988161	Not Available	748	Open in IMG/M
3300016387\|Ga0182040_10674630	Not Available	843	Open in IMG/M
3300016404\|Ga0182037_10556363	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300016445\|Ga0182038_10024749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3676	Open in IMG/M
3300016445\|Ga0182038_12145737	Not Available	507	Open in IMG/M
3300018482\|Ga0066669_10596186	All Organisms → cellular organisms → Bacteria → Proteobacteria	968	Open in IMG/M
3300020579\|Ga0210407_11038337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	624	Open in IMG/M
3300021181\|Ga0210388_11721380	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300021372\|Ga0213877_10212751	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300021406\|Ga0210386_10148148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1961	Open in IMG/M
3300021441\|Ga0213871_10056152	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300021478\|Ga0210402_10877743	Not Available	823	Open in IMG/M
3300021560\|Ga0126371_10368925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1573	Open in IMG/M
3300022533\|Ga0242662_10146606	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300022713\|Ga0242677_1005635	Not Available	1221	Open in IMG/M
3300022715\|Ga0242678_1005139	Not Available	1231	Open in IMG/M
3300022726\|Ga0242654_10196691	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300025910\|Ga0207684_11100092	Not Available	661	Open in IMG/M
3300025916\|Ga0207663_10782627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	759	Open in IMG/M
3300026530\|Ga0209807_1029311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2651	Open in IMG/M
3300026542\|Ga0209805_1015933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3988	Open in IMG/M
3300026552\|Ga0209577_10055334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3331	Open in IMG/M
3300027371\|Ga0209418_1071679	Not Available	620	Open in IMG/M
3300027701\|Ga0209447_10103857	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300027884\|Ga0209275_10781849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300030967\|Ga0075399_11390908	All Organisms → cellular organisms → Bacteria → Proteobacteria	635	Open in IMG/M
3300030973\|Ga0075395_11248392	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300031231\|Ga0170824_120299205	Not Available	799	Open in IMG/M
3300031474\|Ga0170818_102735128	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031474\|Ga0170818_102971536	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300031545\|Ga0318541_10178613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1171	Open in IMG/M
3300031545\|Ga0318541_10777063	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300031546\|Ga0318538_10479617	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300031561\|Ga0318528_10068502	All Organisms → cellular organisms → Bacteria → Proteobacteria	1824	Open in IMG/M
3300031561\|Ga0318528_10308244	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300031561\|Ga0318528_10568654	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300031564\|Ga0318573_10708040	Not Available	541	Open in IMG/M
3300031640\|Ga0318555_10116446	All Organisms → cellular organisms → Bacteria → Proteobacteria	1417	Open in IMG/M
3300031713\|Ga0318496_10287549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	907	Open in IMG/M
3300031736\|Ga0318501_10734537	Not Available	545	Open in IMG/M
3300031744\|Ga0306918_11293984	Not Available	561	Open in IMG/M
3300031754\|Ga0307475_10614770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	870	Open in IMG/M
3300031763\|Ga0318537_10049227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1527	Open in IMG/M
3300031771\|Ga0318546_10762985	Not Available	681	Open in IMG/M
3300031771\|Ga0318546_11115202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	554	Open in IMG/M
3300031780\|Ga0318508_1031322	All Organisms → cellular organisms → Bacteria → Proteobacteria	1349	Open in IMG/M
3300031781\|Ga0318547_10371590	Not Available	875	Open in IMG/M
3300031793\|Ga0318548_10233435	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300031796\|Ga0318576_10157569	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300031910\|Ga0306923_11858230	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300031912\|Ga0306921_10336195	All Organisms → cellular organisms → Bacteria → Proteobacteria	1766	Open in IMG/M
3300031912\|Ga0306921_11349454	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300031941\|Ga0310912_10163040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1689	Open in IMG/M
3300031962\|Ga0307479_11920059	Not Available	542	Open in IMG/M
3300031981\|Ga0318531_10137089	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300032001\|Ga0306922_10532243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1250	Open in IMG/M
3300032035\|Ga0310911_10479593	Not Available	721	Open in IMG/M
3300032039\|Ga0318559_10151836	Not Available	1052	Open in IMG/M
3300032043\|Ga0318556_10187094	Not Available	1075	Open in IMG/M
3300032051\|Ga0318532_10156298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	810	Open in IMG/M
3300032059\|Ga0318533_10622739	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300032060\|Ga0318505_10120625	All Organisms → cellular organisms → Bacteria → Proteobacteria	1200	Open in IMG/M
3300032060\|Ga0318505_10547333	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300032063\|Ga0318504_10245087	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300032063\|Ga0318504_10377771	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300032065\|Ga0318513_10459163	Not Available	623	Open in IMG/M
3300032065\|Ga0318513_10686232	Not Available	502	Open in IMG/M
3300032068\|Ga0318553_10457388	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300032090\|Ga0318518_10696120	Not Available	517	Open in IMG/M
3300032094\|Ga0318540_10183220	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300032180\|Ga0307471_101025865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	992	Open in IMG/M
3300032421\|Ga0310812_10074982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14	1352	Open in IMG/M
3300032896\|Ga0335075_10693485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	981	Open in IMG/M
3300033134\|Ga0335073_11480016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300033290\|Ga0318519_10091357	All Organisms → cellular organisms → Bacteria → Proteobacteria	1621	Open in IMG/M
3300033486\|Ga0316624_10103492	Not Available	2013	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.69%
Host-Associated	Host-Associated	5.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.04%
Plants	Host-Associated → Plants	5.31%
Aquatic	Environmental → Aquatic	2.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.04%
Freshwater	Environmental → Aquatic → Freshwater	2.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.88%
Loam	Environmental → Terrestrial → Soil → Loam	10.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.42%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022713	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030967	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030973	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1002462854	3300002245	Forest Soil	AEYHEVVTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRA*
Ga0062385_105990541	3300004080	Bog Forest Soil	EYHEVLTEDRPDLDAATEDWEPKEGLLAAIFIDFLRRQQHRA*
Ga0066678_108374771	3300005181	Soil	EYHEVLAEDRMDLDIAFEDWEKKEGLLAAIFIDFLRRQQRR*
Ga0070714_1016868991	3300005435	Agricultural Soil	HEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRTERRH*
Ga0070711_1016871982	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	EYHEVLSEDRMDLDIAFEDWEKKEGLLAAIFIDFLRRQQRR*
Ga0070708_1013149632	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	EYHEVLTEDRMDLDVAFEDWAKKEGLLAAIFIDFLRRQQRR*
Ga0070706_1007768352	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	EYHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAERRA*
Ga0066707_110077492	3300005556	Soil	EDRMDLDVAFEDWEKKEGLLAAIFIDFLRRQQRR*
Ga0066704_104492813	3300005557	Soil	VLTEDRPDLDVALEDWNAKEGLLAAIFINFLRRAQRRA*
Ga0068855_1021168902	3300005563	Corn Rhizosphere	NGEYHEVLTEDRTDLEVALEDWNAKEGLLAAIFIDFLRRAEGRR*
Ga0070765_1009564272	3300006176	Soil	QVVTDDHPDIEAAFADWDKKEGLLAAIFIDFLRRQQRR*
Ga0075426_113897121	3300006903	Populus Rhizosphere	VLTEDRPDLDVALEEWNAKEGLLAAIFIDFLRRNERRA*
Ga0075424_1007658092	3300006904	Populus Rhizosphere	EYHEVLTEDRTDLEVALEDWSAKEGLLAAIFIDFLRRAEGRR*
Ga0079219_108460231	3300006954	Agricultural Soil	EDRPDLDVALEDWNAKEGRLAAIFIDFLRRTERRA*
Ga0099792_102571751	3300009143	Vadose Zone Soil	LTEDRPDLDVALEEWSAKEGLLAAIFIDFLRRAERRS*
Ga0126373_116684971	3300010048	Tropical Forest Soil	EYHEVLTEGRLDLDVALEDWNAKEGLLAAIFIDFLRRTERRT*
Ga0126370_115044302	3300010358	Tropical Forest Soil	EYHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRCERGR*
Ga0126376_131714772	3300010359	Tropical Forest Soil	TEDRPDVDVALEDWNAKEGLLAATFIDFLRRTERRA*
Ga0134125_129785081	3300010371	Terrestrial Soil	SEDRMDLDIAFEDLEKKEGLLAAIFIDFLRRQQRR*
Ga0126381_1003845823	3300010376	Tropical Forest Soil	NSEYHEVLTEDRPELEVALEDWNAKEGLLAAIFIDFLRRAERRG*
Ga0150983_127809051	3300011120	Forest Soil	RPDLDVALEDWEAKAGLLAAIFIDFLRRTERHDR*
Ga0137363_113881831	3300012202	Vadose Zone Soil	LTEDRPDLDVALEDWEAKAGLLAAIFIDFLRRTERRDR*
Ga0137380_108791511	3300012206	Vadose Zone Soil	SEYHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAERRA*
Ga0137381_105387542	3300012207	Vadose Zone Soil	TEDRPDLDVAMEDWAAKEGLLAAIFIDFLRRAQRHA*
Ga0137370_103949353	3300012285	Vadose Zone Soil	VLTEDRMDLDVAFEDWEKKEGLLAAVFIDFLRRRQRV*
Ga0137390_108037682	3300012363	Vadose Zone Soil	LTEDREDLDIAFEDWEKKEGLLAAIFIDFLRRQGRR*
Ga0137358_110703121	3300012582	Vadose Zone Soil	QVVSDDHPDIETAFADWDRKEGLLAATFTDFLRSQGR*
Ga0137394_112151932	3300012922	Vadose Zone Soil	EYHEVVTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRA*
Ga0137404_106819573	3300012929	Vadose Zone Soil	NAEYREVLTDDREDLDIAFEDCEKKEGLLAAIFIDFLRRQGRR*
Ga0134077_105714652	3300012972	Grasslands Soil	MPNSEYHEVLTEDRPDLDVALEEWNAKEGLLAAIFVDFLRRAERRS*
Ga0181535_101082552	3300014199	Bog	TDDHPDIEAAFADWDRKEGLLAATFIDFLRRQGRR*
Ga0132255_1053017091	3300015374	Arabidopsis Rhizosphere	HEVLTEDRPDLDVALEEWSAKEGLLAAVFIDFLRRAERRA*
Ga0182036_118931002	3300016270	Soil	EVLTEDRPDLDVALEDWNAKEGLLAATFIDFLRRTQRRA
Ga0182041_113620913	3300016294	Soil	TEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAERRG
Ga0182033_109881612	3300016319	Soil	EDRSDLDVALEDWDAKEGLLAAIFIDFRRRAQRPA
Ga0182040_106746302	3300016387	Soil	MPNAEYHEVVTEDRPDLDVALEDWNAKEGLLAAILRRAQRRY
Ga0182037_105563632	3300016404	Soil	EDRPDLDVALEDWNAKEGLLAAVFVDFLRRAQRRS
Ga0182038_100247495	3300016445	Soil	EVLIEDRPDLDVALEDWSAKEGLLAAIFIDFLRRTERRL
Ga0182038_121457372	3300016445	Soil	EDRPDLDVALEDWSAKEGLLAAIFIDFLRRTERHA
Ga0066669_105961861	3300018482	Grasslands Soil	EYHEVMAEDRMDLDVALEDWEKKEGLLAAIFIDFLRRQQRR
Ga0210407_110383372	3300020579	Soil	YHEVVTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRA
Ga0210388_117213801	3300021181	Soil	EYHEVLTEDRPDLDVALEEWNAKEGLLAAIFIDFLRRAERRGRMAVV
Ga0213877_102127512	3300021372	Bulk Soil	EYHEMLTEDRPDQDVAIEDWNAKEGLLAAIFIDFLRRAQRRG
Ga0210386_101481481	3300021406	Soil	SEYHEVLTEDRPDLDVALEEWNAKEGLLAAIFIDFLRRAERRGRMAVV
Ga0213871_100561523	3300021441	Rhizosphere	NSEYHEVLPENRYDVDVALEDWEAKEGLLAAIFIDYLRRLQRRGG
Ga0210402_108777431	3300021478	Soil	YHEVLTEDRPDLDVALEEWNAKEGLLAAIFIDFLRRAERRGRMAVV
Ga0126371_103689253	3300021560	Tropical Forest Soil	MPSIEVLTEDRLDLDVALEDWNAKEGLLAAIFIDFLRRAQRSA
Ga0242662_101466062	3300022533	Soil	EVLTEDRPDLDVALEDWEAKAGLLAAIFIDFLRRTERHDR
Ga0242677_10056352	3300022713	Soil	SNAEYHEVLTEDRPDQDVATEDWAKKEGLLAAIFIDFLRRQQRG
Ga0242678_10051392	3300022715	Soil	AEYHEVLTEDRPDQDVATEDWAKKEGLLAAIFIDFLRRQQRG
Ga0242654_101966911	3300022726	Soil	EVVTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRMQRRA
Ga0207684_111000922	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	SEYHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAERRA
Ga0207663_107826271	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	EYHEVLSEDRMDLDIAFEDWEKKEGLLAAIFIDFLRRQQRR
Ga0207683_113091761	3300026121	Miscanthus Rhizosphere	HQVVTDDHPDIDAAFADWDKKEGLLAATFIDFIRRQRR
Ga0209807_10293112	3300026530	Soil	MPNSEYHEVLTEDRPDLDVALEEWNAKEGLLAAIFVDFLRRAERRS
Ga0209805_10159331	3300026542	Soil	HRLMANSEYHEVLTEDRPDLDVALEEWNAKEGLLAAIFVDFLRRAERRS
Ga0209577_100553341	3300026552	Soil	YHEVLAEDRMDLDIAFEDWEKKEGLLAAIFIDFLRRQQRR
Ga0209418_10716792	3300027371	Forest Soil	EVVTEDRPDLDVALEDWNAKEGLLAAVFIDFLRRAKRRS
Ga0209447_101038571	3300027701	Bog Forest Soil	NSEYHEVLTEDRPDLDVALEEWNAKEGLLAAIFVDFLRRAERRS
Ga0209275_107818491	3300027884	Soil	VLTEDRPDLDVALEDWHAKEGLLAAIFIDFLRRAERRG
Ga0308309_111442101	3300028906	Soil	NAEYHQVVTDDHPDIEAAFADWDKKEGLLAAIFIDFLRRQQRR
Ga0075399_113909082	3300030967	Soil	VVTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRVQRRT
Ga0075395_112483922	3300030973	Soil	HEVVTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRVQRRA
Ga0170824_1202992051	3300031231	Forest Soil	VLTEDRPDLDVALEEWNAKEGLLAAIFIDFLRRAERHGSMATV
Ga0170818_1027351282	3300031474	Forest Soil	VLTEDRPDLDVALEEWNAKEGLLAAIFIDFLRRAERRA
Ga0170818_1029715361	3300031474	Forest Soil	EYHEVVTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRLQRRA
Ga0318541_101786131	3300031545	Soil	HEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRVQRRA
Ga0318541_107770631	3300031545	Soil	GDRRPPDLDVALEDWNAKEGLLAAIFIDFLRRALRRG
Ga0318538_104796172	3300031546	Soil	TEDRPDLDVALEDWNAKEGLLAAIFIDFLRRTESRA
Ga0318528_100685023	3300031561	Soil	VMTEERPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRY
Ga0318528_103082442	3300031561	Soil	EYHEVLSEDRLDQDVALEDWNAKEGLLAAIFIDFLRRAARGQ
Ga0318528_105686542	3300031561	Soil	TEDRLDLDVALEDWNAKEGLLAAIFIDYLRRVQRRA
Ga0318573_107080401	3300031564	Soil	EYHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRY
Ga0318555_101164463	3300031640	Soil	AEYHEVLTEERPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRY
Ga0318496_102875493	3300031713	Soil	TEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAERRA
Ga0318501_107345371	3300031736	Soil	VLTEDRPDLDVALEDWNAKEGLLAAIFIDYLRRVQRRA
Ga0306918_112939841	3300031744	Soil	EVVTEDHPDLDVALEDWNAKEGLLAAIFIDFLRRVQRRT
Ga0307475_106147702	3300031754	Hardwood Forest Soil	EYHEVLTEDRPDLDVALQEWNAKEGLLAAIFIDFLRRAERRS
Ga0318537_100492273	3300031763	Soil	EYHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRTERRA
Ga0318546_107629852	3300031771	Soil	HRLMPSAEYHEVVTEDRPDLDVALEDWNAKEGLLAAILINFLRCAQRRY
Ga0318546_111152021	3300031771	Soil	RLMPNAEYHEVLTEDRPDLDVALEDWNAKEGLLAAVFVDFLRRAQRRS
Ga0318508_10313223	3300031780	Soil	AEYREVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRY
Ga0318547_103715901	3300031781	Soil	RLMPNAGYHEVGTEDRPDLDVALEDWNAKEGLLAAIIIDFLRRAQRRY
Ga0318548_102334352	3300031793	Soil	EYHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRVQRGV
Ga0318576_101575693	3300031796	Soil	VVTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRVQHRA
Ga0306923_118582301	3300031910	Soil	YHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRVQRRA
Ga0306921_103361952	3300031912	Soil	LIEDRPDLDVALEDWNAKEGLLAAIFIDFLRRTERRA
Ga0306921_113494542	3300031912	Soil	HEVLPDDRPDLDVALEDWQAKEGLLAAIFIDFLRRAERR
Ga0310912_101630403	3300031941	Soil	EYHEVLTEDRPDLDVALEDWNVKEGLLAAIFIDFLRRTERRP
Ga0307479_119200591	3300031962	Hardwood Forest Soil	HEVLTEDRMDLDVAFEDWEAKEGLLAAIFIDFLRRQR
Ga0318531_101370892	3300031981	Soil	AEYHEVVTEDRPDLDVALEDWNAKEGLLAAILINFLRCAQRRY
Ga0306922_105322431	3300032001	Soil	SEYHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRTERRA
Ga0310911_104795931	3300032035	Soil	MPNAEYHEVLTEDRLDLDVALEDWNAKEGLLAAIFVDFLRRAQRRA
Ga0318559_101518362	3300032039	Soil	EVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRY
Ga0318556_101870941	3300032043	Soil	REVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRY
Ga0318532_101562981	3300032051	Soil	VLTEDRLDQDVALEDWEKKEGLLAAIFVDFLRRTQRHL
Ga0318533_106227392	3300032059	Soil	LTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRTESRA
Ga0318505_101206253	3300032060	Soil	HEVLTEERPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRY
Ga0318505_105473332	3300032060	Soil	HEVVTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRVQQRG
Ga0318504_102450871	3300032063	Soil	PNSEYHEVLTEDRPDLDVALEDWNAKEGLLAAIFVDFLRRAQRRA
Ga0318504_103777711	3300032063	Soil	NAEYHEVLTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRY
Ga0318513_104591631	3300032065	Soil	YHEVVTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRVQHRA
Ga0318513_106862321	3300032065	Soil	TEYHEVLTEGRLDLDVALEDWNAKEGLLAAIFIDFLRRTERRT
Ga0318553_104573882	3300032068	Soil	AEYHEVVTEDRPDLDVALEDWNAKEGLLAAILRRAQRRY
Ga0318518_106961201	3300032090	Soil	EDRPDLDLALEDWSAKEGLLAAIFIDFLRRAQRRS
Ga0318540_101832201	3300032094	Soil	TEDRPDLDLALEDWSAKEGLLAAIFIDFLRRAQRRS
Ga0307471_1010258652	3300032180	Hardwood Forest Soil	VTEDRPDLDVALEDWNAKEGLLAAIFIDFLRRVQRRA
Ga0310812_100749822	3300032421	Soil	YHEVLSEDRMDLDIAFEDWEKKEGLLAAIFVDFLRRQQRR
Ga0335082_114476501	3300032782	Soil	NAEYHQVVTATHFELEAAFADWDKKEGLLAATFIDFLRRRQR
Ga0335075_106934852	3300032896	Soil	AHRLLSNAEYHEVLTEDRPDQDVATEDWEKKEGLLAAIFIDFIRRREHRT
Ga0335073_114800161	3300033134	Soil	YHEVLTEDRLDLDVALEDWERKEGLLAAIFIDFLRRTQRHL
Ga0318519_100913571	3300033290	Soil	EYHEVLTEERPDLDVALEDWNAKEGLLAAIFIDFLRRAQRRY
Ga0316624_101034922	3300033486	Soil	HEVLTEDREDLDIAFEDWERKEGLLAAVFIDFLRRQGRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082972

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences