Metagenome Family F082943

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082943
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	55 residues
Representative Sequence	MNTKKNSTIAICLTAILALSPVASFAQATTTFSGEAVALRANALGISLALSDT
Number of Associated Samples	85
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	2.65 %
% of genes from short scaffolds (< 2000 bps)	1.77 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (97.345 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (41.593 % of family members)
Environment Ontology (ENVO)	Unclassified (37.168 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.673 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 61.73% β-sheet: 0.00% Coil/Unstructured: 38.27%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF01066	CDP-OH_P_transf	3.54
PF02518	HATPase_c	3.54
PF01638	HxlR	3.54
PF08818	DUF1801	1.77
PF11154	DUF2934	1.77
PF04397	LytTR	0.88
PF04185	Phosphoesterase	0.88
PF00448	SRP54	0.88
PF04366	Ysc84	0.88
PF07730	HisKA_3	0.88

Showing 1 to 10 of 24 entries

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COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	3.54
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	3.54
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	3.54
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	3.54
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.77
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.77
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.77
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.77
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.88
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.88

Phylogeny

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	2.65 %
Unclassified	root	N/A	97.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	2.65 %
Unclassified	root	N/A	97.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.65 %
Unclassified	root	N/A	97.35 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.77 %
Unclassified	root	N/A	97.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Unclassified	root	N/A	97.35 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100508392	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300002907\|JGI25613J43889_10003662	All Organisms → cellular organisms → Bacteria → Acidobacteria	4160	Open in IMG/M
3300012917\|Ga0137395_10103720	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1893	Open in IMG/M

Showing 1 to 3 of 3 entries

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Environmental Properties

Associated Habitat Types

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Habitat	Taxonomy	Distribution
Environmental	Environmental	96.46%
Host-Associated	Host-Associated	3.54%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	3.54%
Terrestrial	Environmental → Terrestrial	96.46%

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Soil	Environmental → Terrestrial → Soil	96.46%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	6.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.35%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.08%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	41.59%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 85 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10726412	3300000580	Forest Soil	MNKNKVAIVAIGLTALLAFSPAASFAQATTFSGEAVGLKANVVGVSLSLADT
AF_2010_repII_A1DRAFT_101165911	3300000597	Forest Soil	MNKNKVAIVAIGLTALLAFSPAASFAQATTFSGEAVGLKANVVGVSLSLADTGALPSSGGNLSNSLASVNVAGI
JGIcombinedJ26739_1000583351	3300002245	Forest Soil	MNANKNSTIVIFLTAILVVSPVASFAQAATTFSGEAVALRRASAVGISLAVSDTGPLPASGGNLKTSVGSV
JGIcombinedJ26739_1005083921	3300002245	Forest Soil	MNANKKSTIVIFLTAILVVSPVASFAQAATTFSGEAVALRASAPGISLAVSDTGPLPASGGNLKTSVGSV
JGI25613J43889_100036625	3300002907	Grasslands Soil	MNTKKNSTIAICLTAILALSPVASFAQATTTFSGEAVALRANALGISLALSDTGPLAA
JGI25388J43891_10043174	3300002909	Grasslands Soil	MNTKKNSAITICLVAILTLSPAFSFAQAATTFSGEAVALRASAVGISLALADTGA
JGI25615J43890_10075152	3300002910	Grasslands Soil	MNTKKNSTIAICLTAILALSPVASFAQATTTFSGEAVALRANALGISLALSDT
JGI25616J43925_100128825	3300002917	Grasslands Soil	MNTKKNSTIAICLTAXLALSPVASFAQATTTFSGEAVALRANALGISLALSDTGPLAA
JGI25616J43925_102553721	3300002917	Grasslands Soil	MNTKKNSMMAACLTAMLAFSPVASFSQATTTFSGEAVALKANALGISLALSDTGALPASGGNLSTSLASVNVLGLAS
JGI25616J43925_102865561	3300002917	Grasslands Soil	MNTRKNTTIAIFLTAILAFSPLAGFAQAATTFSGEAVALRANALGISASISDTGPLPSS
Ga0066673_100178504	3300005175	Soil	MKTKKKSTIAICLMTILVFSPVATFAQATITFSGEAVALRAKALGISLDLSDT
Ga0066679_104195912	3300005176	Soil	MQMNAKNTPMIAICLAAVLALGPVASFAQATTTFSGRAVALRA
Ga0070713_1015176971	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LNTKKNATLAICLTALLVFSPLAGYAQATTTFSGEGVALKANALGISLSAADTGALPSSGGNLSTSLASVNVLGL
Ga0066681_103020901	3300005451	Soil	LNAKKNATIALCLTALLAFSPLAGFAQAATTYSGDATALQASAVGISLALSHAG
Ga0070706_1014153011	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MATKKPSTIAICLIGALAFGPVTSFAQATATFSGQAVALRASAVGLALA
Ga0066701_101172303	3300005552	Soil	MKTKKKSTMAICLTAILAFSPVASFAQATITFSGEAVALRAKALGISLDLSDTGPLAASGGNLST
Ga0066707_100483451	3300005556	Soil	MKTKKKSTMAICLTAILAFSPVASFAQATITFSGEAVALRAKALGISLDLSDTGLLAASGGNLSTSLASVNVLGLASADALKSTTSGSG
Ga0066704_101235755	3300005557	Soil	MQMSTKKNSTIAICLTAILALSPVASFAQATATFSGEAVALRANALGISLALSDTGALQSSGGNLSRSLASVNV
Ga0066702_102147223	3300005575	Soil	MNTKKNSAITICLVAILTLSPAFSFAQAATTFSGEAVAL
Ga0066651_108369321	3300006031	Soil	MNAKNSTIAICLIAILVFSPVASFAQATITFSGEAVALR
Ga0070765_1021261533	3300006176	Soil	MNTKKNSTMAICLTAILVLSPIASFAQATTTFSGEAVALRASVVGISLSLADT
Ga0079222_100440592	3300006755	Agricultural Soil	MNKKRTSMLAICLTALLAFSPLITFAQSATTFSGEAVALKANALGVSLALRCTSPGQVST
Ga0079222_105428791	3300006755	Agricultural Soil	MNTNMHANKNSIIATCLVAILTLGPLRGFAQSATTFSGEAVALRANAVGISLALSDTGALPSSGGSL
Ga0066658_100257651	3300006794	Soil	MNTKKNSAITICLVAILTLSPAFSFAQAATTFSGEAVALRASAVGISLALADTGALPSSGGSLSTS
Ga0066665_105942072	3300006796	Soil	MNMQKNSTIAICLTAILALSPIASLAQATTTFSGEAVALRA
Ga0066665_114037032	3300006796	Soil	MNTKKNSAITICLVAILTLSPAFSFAQAATTFSGE
Ga0079220_100891541	3300006806	Agricultural Soil	MLAMCLTALLAFSPLITFAQSATTFSGEAVALKANALGVSLALR
Ga0075431_1001559213	3300006847	Populus Rhizosphere	VHMNTSKNAMIAICLTAILAFAPLAGFAQAATTFSGEAVALRANALGISL
Ga0075424_1023006981	3300006904	Populus Rhizosphere	VHMNTSKNAMIAICLTAILAFAPLAGFAQAATTFSGEAVALRANALGIS
Ga0099791_101903161	3300007255	Vadose Zone Soil	MNAKKNSTIAICLMVLVTFSPVASFAQATITFSGQAVALRVSAVGL
Ga0099791_105107701	3300007255	Vadose Zone Soil	MQMSTKKNSTIAICLTAILALSPVASFAQATTTFNGEAVALRANALGISLALSDTGALQSSGGNLSRSLASVNVLGLASADA
Ga0099794_106593181	3300007265	Vadose Zone Soil	MQMSTKKNSTIAICLTAILALSPVASFAQATATFSGEAVALRAN
Ga0099830_110779131	3300009088	Vadose Zone Soil	MNTKKNSTIAICLTAILALSPVASFAQATTTFSGEAVALRASALGISLALSD
Ga0099828_103138331	3300009089	Vadose Zone Soil	MQMNANKNSTITIAICLIAILVFSPVAGFAQAAITFSGEAVALRASAAGISLAVSDTGPLPA
Ga0075418_111123702	3300009100	Populus Rhizosphere	MNTSKNAMIAICLTAILAFAPLAGFAQAATTFSGEAVALRANALGISLSLSDT*
Ga0126382_103603491	3300010047	Tropical Forest Soil	MNMKNNAAIAVCLTAILAFSPLAGFAQAATTFSGEAVALRANALGISLSLSDAG
Ga0126382_104369471	3300010047	Tropical Forest Soil	MNTSKNAMIAICLTAILAFAPLAGFAQAATTFSGEAVALRANALGISLSLSDAGPLP
Ga0134082_100551071	3300010303	Grasslands Soil	LEEENVQMKTKKKSTIAICLMTILVFSPVATFAQATITFSGEAVALRAKAL
Ga0126370_102922991	3300010358	Tropical Forest Soil	MITMKNPSIAILLAAILAFSQFAGLAQATTFSGEAVALKANALGVSLTASDTGPLP
Ga0126378_114558141	3300010361	Tropical Forest Soil	MNTKKNAMIAILLTAILAFSPLAGFAQAATTFSGQAVALKANALGISLDVSDTGALPSSGGNLST
Ga0134066_100611941	3300010364	Grasslands Soil	MITKKNSTMAICLMTILVFSPVATFAQATITFSGEA
Ga0126381_1047529311	3300010376	Tropical Forest Soil	MNEKKAIIAICLAAVLVLGLSPGVSLAQGTTTFSGEAVALKASVAGISLDLGDTGALPSSGGNLSTSLAS
Ga0137391_115213661	3300011270	Vadose Zone Soil	MQMNPKKNSTIAICLMAILAFSPVATFAQASTTFSGQAVALRASAVGLALALSDTGPLPA
Ga0137388_119766061	3300012189	Vadose Zone Soil	MNAKKNSTIAICLMVLVAFGPVASFAQAPNTFRDQAVALLVSAVGLGLALSDTGPIPAS
Ga0137364_100787274	3300012198	Vadose Zone Soil	MQMNAKNSTIAICLIAILVFSPVASFAQATITFSGEAVALRAKALGISLDL
Ga0137364_101006063	3300012198	Vadose Zone Soil	MNTKKNSTIAICLTAILAFSPVASFAQATITFSGEAVALRAKALGISLDLSDTGPLAA
Ga0137364_105465962	3300012198	Vadose Zone Soil	MNAKNSTIAICLIAILVFSPVASFAQATITFSGEAVALRAKALGISLDL
Ga0137383_103292162	3300012199	Vadose Zone Soil	MNAKNSTIAICLIAILVFSPVASFAQATITFSGEAVALRAKALGISLDLSDTGPLAA
Ga0137382_102502951	3300012200	Vadose Zone Soil	MNAKNSTIAICLIAILVFSPVASFAQATITFSGEAVALRAKA
Ga0137382_109386392	3300012200	Vadose Zone Soil	MNAKNSTIAICLIAILVFSPVASFAQAPVTFSGEAVALPARALGLSLDLSDTGPLAASG
Ga0137363_107335611	3300012202	Vadose Zone Soil	MNTKKNAGIAVFLTALLLYSPLAGFAQTATSFSGEGIALK
Ga0137399_100916021	3300012203	Vadose Zone Soil	MNTQKNSTIAICLTAILALSPIASFAQATTTFSGEAVALRANAL
Ga0137399_102028541	3300012203	Vadose Zone Soil	MNAKKNSTIAICLMAILAFGSVTSFAQARTTYSGQAVALRASAT
Ga0137399_106929031	3300012203	Vadose Zone Soil	MNTKKNSTMAICLTAILALSPIASLAQAATTFSGEAVALKANALGISLSLADTEALPSS
Ga0137399_108880021	3300012203	Vadose Zone Soil	MNAKKNSTIAICLMAILAFGPVVSFAQARTTYSGQAVALRASA
Ga0137399_110652961	3300012203	Vadose Zone Soil	MITKKNSTIAICLMTILVFGPVASFAQATITFSGEAVALRAKALGISLDLSDTGPLAASGGN
Ga0137399_111490521	3300012203	Vadose Zone Soil	MNTRKNSMMAACLTAILAFSPVASFSQATTTFSGEAVALKANALGISLALSDTGAVPARGGNLSTSLATFRRKNACCR*
Ga0137377_112800181	3300012211	Vadose Zone Soil	MNTKKNSAIAICLTAILAFSPVASFAQATITFSGEAVALRAKALGISLDLSDTGPLAA
Ga0137370_100471724	3300012285	Vadose Zone Soil	MQMNAKNSTIAICLIAILVFSPVASFAQATITFSGEAVALRAKALGISLDLSDTGPLAA
Ga0137370_102143932	3300012285	Vadose Zone Soil	MNAKNSTIAICLIAILVFSPVASFAQTTITFSGEAVALRAKALGISLDLSDTGPLAARGGNLSTSLA
Ga0137387_107543581	3300012349	Vadose Zone Soil	MNTRKNSTIAICLTAVLGLSPVASFAQATTTFSGEAVALKANALGISLALSD
Ga0137361_107325702	3300012362	Vadose Zone Soil	MQMNANKNSTITIAICLIAILVFSPVAGFAQAAITFSGEAVALRASAAGISLALSDTGPLPASDGNLKTSVGSVSVLGL
Ga0137361_110337592	3300012362	Vadose Zone Soil	MQMNAKNSTIAICLIAILVFSPVASFAQATITFSGEAVALRAKALGISLDLSDTGPLAASGGSLSTSLA
Ga0137398_100220824	3300012683	Vadose Zone Soil	MNTQKNSTIAICLTAILALSPIASFAQATTTFSGEAVALRANALGISL
Ga0137398_102181062	3300012683	Vadose Zone Soil	MNMQKNSTIAICLTAILALSPVASFAQATTTFSGEAVALRANALGISLALSDTGALPSNGGN
Ga0137398_102725401	3300012683	Vadose Zone Soil	MNTQKNSTIAICLTAILALSPIVSFAQATTTFSGEAVALRANALGISLA
Ga0137397_110847101	3300012685	Vadose Zone Soil	MKNKKLSTIAICLIAVLAFGPVTSFAQATTTFSGQAVALRAS
Ga0137395_100600001	3300012917	Vadose Zone Soil	MNMQKNSTIAICLTAILALSPVASFAQATTTFSGEAVALRANALGISLALSDTGA
Ga0137395_101037201	3300012917	Vadose Zone Soil	MNTKKNSTIAICLTAILALSPIASFAQATTTFSGEAVALRANALGISLALSDTGA
Ga0137396_101942712	3300012918	Vadose Zone Soil	MNAKKNSTIAICLMAILAFGSVTSFAQARTTYSGQAVALHASATGLALALSDT
Ga0137396_102443791	3300012918	Vadose Zone Soil	MNTRKNSMMAACLTAILAFSPVASFSQATITFSGEAVALKANALG
Ga0137394_106670991	3300012922	Vadose Zone Soil	MNTKNSTVAIGLVAALAFNPVSTFGQANTFSGQAVALRASAVGIALAL
Ga0137419_101570983	3300012925	Vadose Zone Soil	MNTQKNSTIAICLTAILALSPIASFAQATTTFSGEAVALRANALGISLA
Ga0137416_105560091	3300012927	Vadose Zone Soil	MNTKKNSTIAICLTAILALSPVVGFAQATITFSGEAVALRASALGISLALSDTGP
Ga0137410_108518722	3300012944	Vadose Zone Soil	MSAKKNSTIAICLMVLTTFSPVAAFAQATNTFSGQAVALRV
Ga0137410_114088291	3300012944	Vadose Zone Soil	MQMSTKKNSTMAICLTAILALSPVASFAQATTTFSGEAVALRAS
Ga0126375_105228841	3300012948	Tropical Forest Soil	MNTSKNAMIAICLTAILAFAPLAGFAQTATAFSGEAVALRANA
Ga0126369_118278781	3300012971	Tropical Forest Soil	MNTKKNAVIAIFLTAILAFSSLAGFAQTATSFSGEAVALKANALG
Ga0134079_104861721	3300014166	Grasslands Soil	LEEENVQMKTKKKSTIAICLMTILVFSPVATFAQATITFSGEAVALRAKALGISLDLSDT
Ga0137418_102280842	3300015241	Vadose Zone Soil	MNTQKNSTIAICLTAILALSPIASFAQATTTFSGEAVALR
Ga0137418_108077901	3300015241	Vadose Zone Soil	MNTRKNSMMAACLTAILAFSPVASFSQATTTFSGEAVALKANALGISLALSDTGALPARGGNLSTSVASVNVL
Ga0132258_115388462	3300015371	Arabidopsis Rhizosphere	MKTHKPSTLAICLMAALTFGPLDVFAQTTTFSGQAVALRASAVGLALALSDTGALPAAGGNLATSLASV
Ga0190272_101121471	3300018429	Soil	MPAKHNSTIAICLTAILVLGPVAASAQTNTFSGQAVALRASVIGVALALSDTGPLPATGGDLKTS
Ga0066669_123482101	3300018482	Grasslands Soil	MNTTKNSTIVICLIAILAFSPVATFAQASATFSGRAVALRASAVGLALALS
Ga0179590_12292842	3300020140	Vadose Zone Soil	VHTNTKENSTIAICLMAILVFSPVASFAQATITFSGEAVALRAKALGISLD
Ga0210407_102291581	3300020579	Soil	MNTKKNSTIAICLTAILALSPIASFAQATTTFSGEAVALRASVVGISLSLADTGALPSSGGN
Ga0210401_109933881	3300020583	Soil	MNTKKNSTIAICLTAILALSPIASFAQATTTFSGEAVALRASVVGISLSLADTGALPSS
Ga0210388_113992091	3300021181	Soil	MNTKKNSTMAICLTAILVLSPIASFAQATTTFSGEAVALRASVVGISLSLADTGALPSRGGNLS
Ga0210402_109738081	3300021478	Soil	MNTKKNSTMAICLTAILVLSPIASFAQATTTFSGEAVAL
Ga0207700_115241941	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LNTKKNATLAICLTALLVFSPLAGYAQATTTFSGEGVALKANALGISLSAADTGAL
Ga0209238_11667612	3300026301	Grasslands Soil	MKTKKKSTMAICLTAILAFSPVASFAQATITFSGEAVALRAKALGISLDLSDTGPLAASG
Ga0209240_10258141	3300026304	Grasslands Soil	MNTKKNTTIAIFLTAILAFSPLAGFAQAATTFSGEAVALRVNALGISA
Ga0209240_12693221	3300026304	Grasslands Soil	MNTKKNSTVAICLTAILALSPIASFAQATTTFSGEA
Ga0209152_100866873	3300026325	Soil	MNTKKNSAITICLVAILTLSPAFSFAQAATTFSGEAVALRASAVGISLALADTGALPSSGGSLSTSL
Ga0257163_10799971	3300026359	Soil	MNTKKNSMMAACLTAMLAFSPVASFSQATTTFSGEAVALKANALGISLALSDTGALPASGGNLSTSLASVNVLGL
Ga0257172_11101041	3300026482	Soil	MNTKKNSTIAICLTAILALSPVASFAQATTTFSGQAVA
Ga0257158_11078881	3300026515	Soil	MNTKKNSMMAACLTAMLAFSPVASFSQATTTFSGEAVALKANALGISLALSDTGALPASGGNLSTSLAS
Ga0209474_106827641	3300026550	Soil	MKTKKKSTIAICLMTILVFSPVATFAQATITFSGEAVALRAKALGISL
Ga0209648_106573812	3300026551	Grasslands Soil	MNTKKNSTIAICLTAILALSPVASLAQATTTFSGEAVALRANALGISL
Ga0179587_104179662	3300026557	Vadose Zone Soil	MNTQKNSTIAICLTAILALSPIASFAQATTTFSGEAVALRANALGISLALSDTGALPSSGGNLSMSLAN
Ga0209076_10781911	3300027643	Vadose Zone Soil	MNTRKNSMMAACLTAILAFSPVASFSQATITFSGEAVALK
Ga0209076_10909241	3300027643	Vadose Zone Soil	MNTRKNSMMAACLTAILAFSPVASFSQATTTFSGEAVALKANALGISLALSDTGALPARGGNLS
Ga0137415_101392133	3300028536	Vadose Zone Soil	MNTKKNSTIALCLTAILAFSPVASFAQATTTFSGEAGALRGNALGISLALSDTGPLASGGNLNTSLASVNVLGLASA
Ga0137415_103896311	3300028536	Vadose Zone Soil	MKMNAKKNSTIAICLTAILAFSPVASFAQATTTFTGEAVTLRASAVGISLALSDTGALLSSGGN
Ga0307476_103151821	3300031715	Hardwood Forest Soil	MNTKKNATIASCLMAVLVFSPVATFAQATTTFTGEAV
Ga0307477_110998042	3300031753	Hardwood Forest Soil	MNEKRTSMMTICLRVVLALSPSLSLAQGTTTFSGEAVALKANVLGISLTLADTGQLPSTG
Ga0307475_103966731	3300031754	Hardwood Forest Soil	MNEKRTSMMTICLLVGLALSPALGFAQGTTTFSGEAVALKANALGISLSIADTG
Ga0307478_109890991	3300031823	Hardwood Forest Soil	MNAKRTSTIAICLTAIVALSPVAGFAQATTTFSGEAVALRANVLGTSLALSDTGALPS
Ga0307478_115152841	3300031823	Hardwood Forest Soil	MNTKKNSTMAIGLTAILALSPVASFAQATTTFSGEAVALRASALGISLTLADTGA
Ga0307479_101989061	3300031962	Hardwood Forest Soil	VQINAKTNSTIAICLTAILALIPIASFAQATITFSGEAVALRANAAGIALALSDTGALPSSGGNLSTSLASVN
Ga0307479_103523211	3300031962	Hardwood Forest Soil	MNSKKSSTIAICFVAILAFGPVASFAQATTTFSGEAVALRANALGISLDLSDTGPLAAS
Ga0307471_1001176713	3300032180	Hardwood Forest Soil	MNTKTNSTIAICLTAILALSPVASFARGTTTFSGEAVALRASAVGISLALSDTGAFRLAAGI
Ga0306920_1012229891	3300032261	Soil	MNEKKAIIAVCLAAVLAFSPVVSLAQGTTTFSGEAVALKATAAGISLALG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters