Basic Information | |
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Family ID | F082883 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 113 |
Average Sequence Length | 47 residues |
Representative Sequence | MASRSHFAAPLLLAVVTGLIVYVSLYPFRFAVDGPSLAEAFR |
Number of Associated Samples | 83 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 78 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.46 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (24.779 % of family members) |
Environment Ontology (ENVO) | Unclassified (38.053 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (44.248 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 37.14% β-sheet: 0.00% Coil/Unstructured: 62.86% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
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Visualization |
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Freshwater Sediment Wetland Freshwater Lake Sediment Sediment Wetland Sediment Freshwater Wetlands Sinkhole Freshwater Freshwater Estuarine Soil Soil Serpentine Soil Soil Soil Ore Pile And Mine Drainage Contaminated Soil Soil Untreated Peat Soil Natural And Restored Wetlands Sand Deep Subsurface Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Activated Sludge Anaerobic Digestor Sludge Sediment Slurry |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
MIS_11411011 | 3300002024 | Sinkhole Freshwater | MGGRSSHFAAPLLLAVITGLIVYVSLYPFRFELDGPSL |
P22013IDBA_101735362 | 3300003315 | Ore Pile And Mine Drainage Contaminated Soil | VASRTHFAAPLLLAVFLALILYVSLYPFGFAADGPPVLETLGKLTWARASRGDMFNNVLLYAPL |
Ga0062593_1022021082 | 3300004114 | Soil | MPGRSTHFAAPLLLAVVIGLIVYVSLYPFRFEQDGPTLLDALRTIGWERAG |
Ga0066600_100343671 | 3300004155 | Freshwater | MAGRSSHFAAPLLLAVITGLIVYVSLYPFRFVLDGPSLLEALRALSWAR |
Ga0066600_103806921 | 3300004155 | Freshwater | MTSRSHFAAPLLLAVVTALIVYVSLYPFRFAPDGPSMVEALGHLTWARAGRIEM |
Ga0062589_1027431402 | 3300004156 | Soil | MPGRSTHFAAPLLLAVVIGLIVYVSLYPFRFEQDGPALLDALRTI |
Ga0066599_1007127372 | 3300004282 | Freshwater | MAGRAHFAAPLLLAVVVALILYVSLWPFSFGADGPGVLETLRQLTW |
Ga0062383_106710652 | 3300004778 | Wetland Sediment | MASRSHFAAPLLLAVVTALIVYISLYPFRFAHDGPSMVEALGHLTW |
Ga0065712_106920922 | 3300005290 | Miscanthus Rhizosphere | MASRSNFAAPLLLAVVTGLIVYVSLYPFRFAVDGPTLTEALKVLTW |
Ga0065715_111585482 | 3300005293 | Miscanthus Rhizosphere | MPGRSTHFAAPLLLAVVIGLIVYVSLYPFRFEQDGPALLD |
Ga0070669_1000994323 | 3300005353 | Switchgrass Rhizosphere | MAQRPHLAAPLLLAVAILLILYVSLYPFRFEPDGPSMLAA |
Ga0073903_104647781 | 3300005657 | Activated Sludge | MAGRSTHFAAPLLLAVVTGLIVYVSLYPFRFVPDGPALADALRSLSWARAGRG |
Ga0068870_106305912 | 3300005840 | Miscanthus Rhizosphere | MASRSHFAAPLLMVVMTGLIVYVSLFPFQFMEQGPTFREALH |
Ga0073913_100557781 | 3300005940 | Sand | MTSRSHFAAPLLLAVVTALIVYVSLYPFRFAPDGPSMVEALG |
Ga0079037_1001419993 | 3300006224 | Freshwater Wetlands | MAGRTHFAAPLLLAVVVALILYVSLWPFHFGADGPPVLDTLRQLTWARASRGDMFNN |
Ga0079303_104434851 | 3300006930 | Deep Subsurface | MAGRTHFAAPLLLAVVVALILYVSLWPFHFGADGPPVLDTLRQLTWARA |
Ga0105090_104597722 | 3300009075 | Freshwater Sediment | VRSRSHFAAPLLLAITVALILYASLYPFRFEADGPS |
Ga0105103_101216691 | 3300009085 | Freshwater Sediment | MSSRTHFAAPLLLVIIVALILYVSLYPFRFGADGPTAMEVLRELSWARASRGDMLNNV |
Ga0105103_106352551 | 3300009085 | Freshwater Sediment | MAGRSKHFAAPLLLAVVTGLIVYVSLFPFRFVADGPGLADALRSLSWARAGRGDMFNN |
Ga0105103_107132162 | 3300009085 | Freshwater Sediment | VRSRSHFAAPLLLAITIALILYASLYPFRFEADGPSVATALQQLT |
Ga0115027_107891052 | 3300009131 | Wetland | VAGRSHFAAPVLLVVVVGLILYVSLYPFRFAADGPGVLEALRDI |
Ga0115027_110708462 | 3300009131 | Wetland | VTSRSHFAAPLLLAVVVALILYVSLYPFRFHAEAPAAL |
Ga0105091_101273851 | 3300009146 | Freshwater Sediment | MAYRPHLAAPLLLAVAVLLILYVSLYPFRFAPDGPSMVAAVELLTW |
Ga0105094_106042091 | 3300009153 | Freshwater Sediment | VSSRSHFAAPLLLAVVVALILYVSLYPFRFHAGAPAVFDTLR |
Ga0105094_109441451 | 3300009153 | Freshwater Sediment | MAGRAHFAAPLLLAVVVALVLYVSLWPFRFDADSPTLVEALRHLT |
Ga0105102_100675983 | 3300009165 | Freshwater Sediment | MSSRTHFAAPLLLAIIVALILYVSLYPFRFGADGPSVIEVLRE |
Ga0105102_102310741 | 3300009165 | Freshwater Sediment | MAGRAHFAAPLLRAVVVALVLYVSLWPFRFDADSPTLVEAL |
Ga0105102_108329281 | 3300009165 | Freshwater Sediment | MSSRTHFAAPLLLAIIVALILYVSLYPFQCGADGPTAVQVLRELSWARASRGDMLNNV |
Ga0113563_128637231 | 3300009167 | Freshwater Wetlands | MAGRTHFAAPLLLAVVVALILYVSLWPFHFGADGPPVLD |
Ga0105097_100948952 | 3300009169 | Freshwater Sediment | MASRTPFAAPLLLAVIVALILYVSLYPFQFGADGPTALEVLRELS* |
Ga0105097_101226981 | 3300009169 | Freshwater Sediment | MSSRTHFAAPLLLAIIVALILYVSLYPFQFGADGPTAMEVLRELSWARA |
Ga0105097_103521461 | 3300009169 | Freshwater Sediment | MAGRAHFAAPLLLAAVVALILYVSLWPFRLGANGPEVIEALRELTWERTGPSDMFKN |
Ga0105097_108233982 | 3300009169 | Freshwater Sediment | VASRSHFAAPLLLAAVVALILYVSLYPFRFHAEAPAILETLRQL |
Ga0105096_104312302 | 3300009170 | Freshwater Sediment | VSGRSHFAAPLLLAIVVALILYVSLFPFRLDGAVLTLAEAARTLAWGRASRCDM |
Ga0115028_120459821 | 3300009179 | Wetland | MAGRSTHFAAPLLLAVVIGLIVYVSLYPFRFVPDGPALAEALRSLSWARA |
Ga0126313_116061621 | 3300009840 | Serpentine Soil | MASRSNFAAPLLLAVVTGLIVYVSLYPFRFTLDGPTLTEALRVLTWVRASRGD |
Ga0116249_115007432 | 3300010357 | Anaerobic Digestor Sludge | MAGRSSHFAAPLLLAVVTGLIVYVSLYPFRFVPDGPT |
Ga0137423_11283261 | 3300011430 | Soil | MAYRPHFAAPLLLSIAVLLILYVSLYPFRFAPDGPSMVAAVELLTWARASRSDMLNNVLL |
Ga0137352_11151871 | 3300012164 | Soil | MASRSHFAAPLLLAVLTGLIVYASLYPFRFAPDGPRLGE |
Ga0075309_11291471 | 3300014268 | Natural And Restored Wetlands | MASRAHFAAPLLLAIIVALILYVSLYPFQFGADGPTA |
Ga0075346_10886741 | 3300014306 | Natural And Restored Wetlands | MSSRTHFAAPLLLAVVVALIVYGSLYPFRFAADGPSLV |
Ga0075355_10461622 | 3300014322 | Natural And Restored Wetlands | MASRSHFAAPLLLAVVVALIVYVSLYPFRFAPDGPSLLDAFDRLAWARAGRGEM |
Ga0173478_104070111 | 3300015201 | Soil | MPGRSTHFAAPLLLAVVIGLIVYVSLYPFRFEQDGPALLDALRTIGWERAGRGDMFRN |
Ga0190268_117804171 | 3300018466 | Soil | MAQRPHLAAPLLLAVAVLLILYVSLYPFRFAPDGPSMMAAVELLTWARASRGD |
Ga0190271_134509872 | 3300018481 | Soil | MAYRPHFAAPLLLSIAVLLILYVSLYPFRFAPDGPSMVAAVELLTWAR |
Ga0210334_100953862 | 3300021859 | Estuarine | MSSRSHFAAPMLLAVVIALILYVSTYPFRFSAEDIPILETVRSLDWARASRSDMFNNVLLYVPL |
Ga0124853_10719262 | 3300024056 | Freshwater Wetlands | VASRSYFAAPLLLAVFVALILYVSLYPFGFDANGPPVVDTLRRLTWARAARGDMFN |
Ga0208536_10042182 | 3300026038 | Natural And Restored Wetlands | MAGRPSHFAAPLLLAVITGLIVYVSLYPFRFELDGPTLREALQALSWQRAGRGDMLNNLL |
Ga0208294_10396491 | 3300026057 | Natural And Restored Wetlands | MASRSHFAAPLLLAVVVALIIYVSLYPFRFAVDGPSLPVALTELTWARAGRG |
Ga0208423_10070281 | 3300026070 | Natural And Restored Wetlands | MASRSHFAAPLLLAVVVALIVYVSLYPFRFAPDGPSLLDAF |
Ga0207698_111389562 | 3300026142 | Corn Rhizosphere | MPSRSNFAAPLLLAVVTGLIVYVSLYPFRFAVDGPTLTEALKV |
Ga0209704_10449923 | 3300027693 | Freshwater Sediment | MAGRAHFAAPLLLAVVVALVLYVSLWPFRFDADSPTLVEALRHLTWARASRGD |
Ga0209492_10490733 | 3300027721 | Freshwater Sediment | VASRSHFAAPLLLAAVVALILYVSLYPFRFHAEAPAILET |
Ga0209492_11044971 | 3300027721 | Freshwater Sediment | MSSRTHFAAPLLLAIIVALILYVSLYPFRFGADGPSVIEVLRELSWAR |
Ga0209492_11618902 | 3300027721 | Freshwater Sediment | MGGRSTHFAAPLLLAVVTGLIVYVSLYPFRFIADGPALVD |
Ga0209582_11428452 | 3300027724 | Activated Sludge | MAGRSTHFAAPLLLAVVTGLIVYVSLYPFRFVPDGPALADALRSL |
Ga0209481_105407761 | 3300027880 | Populus Rhizosphere | MAQRPHLAAPLLLAVAVLLILYVSLYPFRFAPDGPSMMAAVELLTWARASRGDMLNNVL |
Ga0209496_101625752 | 3300027890 | Wetland | MAGRSTHFAAPLLLAVVTGLIVYVSLYPFRFVADGPALVDALRSLSW |
Ga0209668_100237725 | 3300027899 | Freshwater Lake Sediment | MASRSHFAAPLLLAVFVGLIVYVSLYPFRVVPHQPTMIEALHLL |
Ga0209668_101783033 | 3300027899 | Freshwater Lake Sediment | MASRSHFAAPLLLAVFVGLIVYVSLYPFRFAAHGPTMVEALRLLTWARAGRM |
Ga0209668_102837501 | 3300027899 | Freshwater Lake Sediment | MASRSHFAAPLLLVVFVGLIVYVSLFPFRFAPHGPTMIEALHLLKWVRAGRTEMFNNVLLYA |
Ga0209668_108428532 | 3300027899 | Freshwater Lake Sediment | MASRSHFAAPLLLAVVVALIVYVSLYPFRFAPGGPS |
Ga0247820_101238493 | 3300028597 | Soil | MAQRPHLAAPLLLAVAVLLILYVSLYPFRFVPDGPSMLAAVELLTWARASRGDMLNNVLL |
Ga0247826_109314202 | 3300030336 | Soil | MAASRHFAAPLLLAVVVALILYVSLFPFEFASSRPT |
Ga0307408_1010084851 | 3300031548 | Rhizosphere | MASRTHFAAPLLLAVVTGLIVYVSLFPFRFVEQGPGLLEA |
Ga0307413_110688821 | 3300031824 | Rhizosphere | MASRTHFAAPLLLAVVTGLIVYVSLFPFRFVEQGPGLLEALRTISWQRAGRGDIFNNLLLYAPFG |
Ga0315290_100654078 | 3300031834 | Sediment | MVNRARHFAAPLLLAVITALIVYVSLYPFRFVEHGPTLSEALR |
Ga0307406_113581331 | 3300031901 | Rhizosphere | MASRSHFAAPLLLAVVTGLIVYVSLFPFRFVEQGPSLLEALRSLSWQRAGRGDMFN |
Ga0307407_114524652 | 3300031903 | Rhizosphere | MASRTHFAAPLLLAVVTGLIVYVSLYPFRFVEHGPTLAQALQRISWQRAGR |
Ga0315278_103943201 | 3300031997 | Sediment | MAGRSTDFAAPLLLAVVTGLIVYVSLYPFRFIPDGPALLDALRS |
Ga0310906_104988661 | 3300032013 | Soil | MPGRSTHFAAPLLLAVVIGLIVYVSLYPFRFEQDGPALLDALRTIGWERAGRGDM |
Ga0315292_115999521 | 3300032143 | Sediment | MAGRSKHFAAPLLLAVITGLIVYVSLFPFRFVADGPGLAEALRSLSWARAG |
Ga0315910_113388742 | 3300032144 | Soil | MASRTHFAAPLLLAVVTGLIVYVSLFPFRFVEHGPGLLEALRSISWQRAGRGDMFNN |
Ga0315295_102889323 | 3300032156 | Sediment | MASRSYFAAPLLLAVFVGLIIYVSLYPFRFVEHGPSMAEALRLLTWVRASRG |
Ga0315276_111411541 | 3300032177 | Sediment | MASRPQHFAAPLLLAVITALIVYVSLYPFRFVEHGPTLAE |
Ga0315271_105595171 | 3300032256 | Sediment | MATAGRSHFAAPLLLAVFVGLIVYVSLYPFRFAAHGPTMVEALRLLTWKRASHSE |
Ga0315287_125225352 | 3300032397 | Sediment | MASRSHFAAPLLLVVFVGLIAYVSLFPFRFNPHGPTMVEALHLLTWVR |
Ga0315275_123912822 | 3300032401 | Sediment | MASRSHFAAPLLLAVVTALIVYVSLYPFRFTPDGPSM |
Ga0315273_102668751 | 3300032516 | Sediment | MASRPQHFAAPLLLAVITALIVYVSLYPFRFVEHGPTLAEALRSLSWARAG |
Ga0315273_110346821 | 3300032516 | Sediment | MSSRSHFAAPLLLAVVTALIVYVSLYPFRFAPDGPSMLE |
Ga0316604_100724361 | 3300033406 | Soil | MAGRTHFAAPLLLAVVVALILYVSLWPFHFGADGPP |
Ga0316604_102153542 | 3300033406 | Soil | MASRSHFAAPLLLAVITGLIVYVSLYPFRFAEDGPTLAEA |
Ga0316604_104815352 | 3300033406 | Soil | VVASRSHFAAPLLLAVFLALILYVSLWPFGVSADGPPVMETLRQLTWARASRG |
Ga0316605_103171482 | 3300033408 | Soil | MSSRTHFAAPLLLAIIVALILYVSLYPFQFGADGPTAMEVLRELSWARASR |
Ga0316605_115148821 | 3300033408 | Soil | MSARSHFAAPLLLASMVALVLYVSLYPFRFDADGPSVA |
Ga0316605_115744941 | 3300033408 | Soil | MSSRSHFAAPLLLAIIVALILYVSLYPFRFGADGPAVIDVLRQLSWA |
Ga0316603_100359995 | 3300033413 | Soil | MASRSHFAAPLLLAVVTGLIVYVSLYPFRFAVDGPSLAEAFRSLGWA |
Ga0316603_105043811 | 3300033413 | Soil | VSSRSHFAAPLLLAAVVALILYVSLYPFRFHAEAPAILETLRQLDWA |
Ga0316603_115769732 | 3300033413 | Soil | MGGRGHFAAPLLLAAVVALILYVSLWPFRLGANGPEVVETLRELTWARA |
Ga0316619_103761111 | 3300033414 | Soil | MASRSHFAAPLLLAVVVALIVYVSLYPFRFAPGGPSLVEALDLLAW |
Ga0316619_110818361 | 3300033414 | Soil | MPSQSHFAAPLLLAVVTALIVYVSLYPFRFAPDGP |
Ga0316625_1000616673 | 3300033418 | Soil | MASRSHFAAPLLLAVVTGLIVYVSLYPFRFAVDGPSLAEAFRSLGWARAG |
Ga0316625_1002233361 | 3300033418 | Soil | MPSQSHFAAPLLLAVVTALIVYVSLYPFRFAPDGPSMVEAFGHLTWA |
Ga0316625_1003114941 | 3300033418 | Soil | MAPRPNSAAPLLLAVVVALIVYVSLYPFRFAPDGPSLLAALDHMTWARAG |
Ga0316625_1006868961 | 3300033418 | Soil | MAGRSTHFAAPLLLAVVTGLIVYVSLYPFRFVADGPALVDALRSLGWARAGRGNDTATT |
Ga0316601_1005290161 | 3300033419 | Soil | MPSQSHFAAPLLLAVVTALIVYISLYPFRFAPDGPS |
Ga0316601_1006534452 | 3300033419 | Soil | MATRSHFAAPLLLAVVVGLIVYGSLYPFRFAPDGPSLVEALGHLAWAR |
Ga0316601_1006693662 | 3300033419 | Soil | MAGRSSHFAAPLLLAVVTGLIVYVSLYPFRFVADGPTLIEALRSITWARAGRGDMF |
Ga0316601_1009931961 | 3300033419 | Soil | MAGRTHFAAPLLLAVVVALILYVSLWPFHFGADGPSMLETLRQLTWARASRGDMFNNV |
Ga0316601_1020652401 | 3300033419 | Soil | VVASRSHFAAPLLLAVFLALILYVSLWPFGVSADGPPVMETLRQLTW |
Ga0316613_112130961 | 3300033434 | Soil | MASRSHFAAPLLLAVVVALIVYVSLYPFRFAPGGPSLV |
Ga0316600_104783681 | 3300033481 | Soil | MASRSHFAAPLLLAVVAGLIVYVSLYPFRFAEHGPTLAEALRTLSWARA |
Ga0316629_118476802 | 3300033483 | Soil | VASRSYFAAPLLLAVFIALILYVSLYPFSFDANGPPVMDTLRKLT |
Ga0316626_110297012 | 3300033485 | Soil | MASRSHFAAPLLLAVVTGLIVYVSLYPFRFAVDGPSLAEAFR |
Ga0316630_105338612 | 3300033487 | Soil | MSGRSHFAAPMLLAIMVALILYVSLYPFRFAADGPSIAAAL |
Ga0316628_1033428172 | 3300033513 | Soil | MTSRSHFAAPLLLAVVSALIVYVSLYPFRFAPDGPSMVEALGHLTWARAGRSEMLRNV |
Ga0316616_1029351511 | 3300033521 | Soil | MSARSHFAAPLLLASMVALILYVSLYPFRFDADGPS |
Ga0316617_1003281803 | 3300033557 | Soil | MAGRSSHFAAPLLLAVVTGLIVYVSLYPFRFVADGPTLIEALRSITW |
Ga0373890_039950_1_117 | 3300034053 | Sediment Slurry | MSSRTHFAAPLLLAIIVALILYVSLYPFQFGADGPAAME |
Ga0373893_065105_1_135 | 3300034056 | Sediment Slurry | MATRSHFAAPLLLAVVVGLIVYGSLYPFRFAADGPSLVEALGHLT |
Ga0373895_063298_1_162 | 3300034075 | Sediment Slurry | MAGRSSHFAAPLLLAVITGLIVYVSLYPFRFELDGPTLREALRALSWQRAGRGD |
Ga0373898_004249_1_168 | 3300034076 | Sediment Slurry | VASRSHFAAPLLLAAVVALILYVSLYPFRFHADAPAVLETLRQMTWARAGRSDMFN |
Ga0370509_0184387_3_167 | 3300034159 | Untreated Peat Soil | MPGRSTHFAAPLLLTVVTGLIVYVSLYPFRFAPDGPTLLEALRAIGWARAGRGDM |
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