Metagenome / Metatranscriptome Family F082834

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082834
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	82 residues
Representative Sequence	MMRLAGIELTEDSLLALVVRLRRAGLDEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL
Number of Associated Samples	90
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.65 %
% of genes near scaffold ends (potentially truncated)	38.05 %
% of genes from short scaffolds (< 2000 bps)	89.38 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.062 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere (8.850 % of family members)
Environment Ontology (ENVO)	Unclassified (48.673 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (70.796 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.18% β-sheet: 7.27% Coil/Unstructured: 44.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.116.1.2: p120GAP domain-like	d1wera_	1wer	0.57786
a.77.1.4: DEATH effector domain, DED	d1n3ka_	1n3k	0.5661
a.77.1.0: automated matches	d2mpca1	2mpc	0.56527
a.77.1.0: automated matches	d3qf2a_	3qf2	0.56005
a.29.3.0: automated matches	d2fona3	2fon	0.5585

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00589	Phage_integrase	8.85
PF00353	HemolysinCabind	3.54
PF03976	PPK2	1.77
PF01544	CorA	1.77
PF01935	DUF87	1.77
PF08681	DUF1778	0.88
PF05738	Cna_B	0.88
PF01904	DUF72	0.88
PF02674	Colicin_V	0.88
PF12934	FTO_CTD	0.88
PF03632	Glyco_hydro_65m	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	1.77
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	1.77
COG1286	Colicin V production accessory protein CvpA, regulator of purF expression and biofilm formation	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	0.88
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.88
COG4453	Uncharacterized conserved protein, DUF1778 family	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.06 %
All Organisms	root	All Organisms	38.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.06 %
cellular organisms	root	All Organisms → cellular organisms	38.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.06 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.06 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	33.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.06 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	30.97 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.06 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.70 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.88 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.06 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	15.04 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.88 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.04 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.88 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.04 %
unclassified Geodermatophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae	0.88 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.04 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	0.88 %
Geodermatophilaceae bacterium URHB0062	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium URHB0062	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_104004635	Not Available	626	Open in IMG/M
3300000956\|JGI10216J12902_113971492	Not Available	1665	Open in IMG/M
3300004114\|Ga0062593_100254212	Not Available	1455	Open in IMG/M
3300004157\|Ga0062590_102347517	Not Available	562	Open in IMG/M
3300004480\|Ga0062592_100358913	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300004643\|Ga0062591_101636202	Not Available	650	Open in IMG/M
3300005093\|Ga0062594_100097345	Not Available	1742	Open in IMG/M
3300005093\|Ga0062594_100485313	Not Available	1038	Open in IMG/M
3300005162\|Ga0066814_10014208	Not Available	1027	Open in IMG/M
3300005327\|Ga0070658_10410310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1164	Open in IMG/M
3300005328\|Ga0070676_11244750	Not Available	567	Open in IMG/M
3300005329\|Ga0070683_101197507	Not Available	730	Open in IMG/M
3300005329\|Ga0070683_101290594	Not Available	702	Open in IMG/M
3300005331\|Ga0070670_100254823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1529	Open in IMG/M
3300005336\|Ga0070680_100180611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1777	Open in IMG/M
3300005336\|Ga0070680_100985101	Not Available	728	Open in IMG/M
3300005337\|Ga0070682_101286627	Not Available	621	Open in IMG/M
3300005338\|Ga0068868_100051688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3234	Open in IMG/M
3300005339\|Ga0070660_100576960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	939	Open in IMG/M
3300005347\|Ga0070668_101260167	Not Available	671	Open in IMG/M
3300005354\|Ga0070675_101076147	Not Available	739	Open in IMG/M
3300005356\|Ga0070674_100732741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	848	Open in IMG/M
3300005364\|Ga0070673_100634552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	977	Open in IMG/M
3300005366\|Ga0070659_101257685	Not Available	656	Open in IMG/M
3300005438\|Ga0070701_10267678	Not Available	1038	Open in IMG/M
3300005455\|Ga0070663_100335370	Not Available	1220	Open in IMG/M
3300005456\|Ga0070678_100282557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1404	Open in IMG/M
3300005457\|Ga0070662_101507311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium URHB0062	580	Open in IMG/M
3300005459\|Ga0068867_100263464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1406	Open in IMG/M
3300005530\|Ga0070679_101413098	Not Available	642	Open in IMG/M
3300005530\|Ga0070679_101855540	Not Available	551	Open in IMG/M
3300005539\|Ga0068853_101582006	Not Available	635	Open in IMG/M
3300005543\|Ga0070672_101700474	Not Available	567	Open in IMG/M
3300005547\|Ga0070693_101580679	Not Available	514	Open in IMG/M
3300005578\|Ga0068854_102011194	Not Available	533	Open in IMG/M
3300005615\|Ga0070702_100671951	Not Available	786	Open in IMG/M
3300005617\|Ga0068859_100149950	All Organisms → cellular organisms → Bacteria	2407	Open in IMG/M
3300005718\|Ga0068866_10378183	Not Available	907	Open in IMG/M
3300005718\|Ga0068866_10421861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	866	Open in IMG/M
3300005834\|Ga0068851_10684295	Not Available	630	Open in IMG/M
3300005937\|Ga0081455_10303208	Not Available	1145	Open in IMG/M
3300006237\|Ga0097621_101647332	Not Available	610	Open in IMG/M
3300006573\|Ga0074055_11829984	Not Available	1823	Open in IMG/M
3300006844\|Ga0075428_102113949	Not Available	582	Open in IMG/M
3300006854\|Ga0075425_100843730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1049	Open in IMG/M
3300006854\|Ga0075425_101725158	Not Available	704	Open in IMG/M
3300006881\|Ga0068865_100038217	All Organisms → cellular organisms → Bacteria	3247	Open in IMG/M
3300006953\|Ga0074063_14163687	Not Available	1288	Open in IMG/M
3300009094\|Ga0111539_10328071	Not Available	1781	Open in IMG/M
3300009094\|Ga0111539_10462258	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300009098\|Ga0105245_10937784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	908	Open in IMG/M
3300009148\|Ga0105243_10372905	Not Available	1317	Open in IMG/M
3300009148\|Ga0105243_11307356	Not Available	742	Open in IMG/M
3300009156\|Ga0111538_10197567	Not Available	2552	Open in IMG/M
3300009156\|Ga0111538_13071692	Not Available	582	Open in IMG/M
3300009162\|Ga0075423_10882923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	948	Open in IMG/M
3300009174\|Ga0105241_10639120	Not Available	965	Open in IMG/M
3300009176\|Ga0105242_10179609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1866	Open in IMG/M
3300010373\|Ga0134128_10555813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1278	Open in IMG/M
3300010373\|Ga0134128_11872306	Not Available	660	Open in IMG/M
3300010375\|Ga0105239_10617482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1237	Open in IMG/M
3300010397\|Ga0134124_11602433	Not Available	681	Open in IMG/M
3300010399\|Ga0134127_10277372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1603	Open in IMG/M
3300010399\|Ga0134127_11330436	Not Available	788	Open in IMG/M
3300010403\|Ga0134123_11769835	Not Available	670	Open in IMG/M
3300011119\|Ga0105246_10097151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2137	Open in IMG/M
3300011119\|Ga0105246_11661813	Not Available	606	Open in IMG/M
3300012897\|Ga0157285_10323728	Not Available	532	Open in IMG/M
3300012915\|Ga0157302_10513100	Not Available	520	Open in IMG/M
3300012943\|Ga0164241_10027219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	4375	Open in IMG/M
3300012943\|Ga0164241_10079959	Not Available	2357	Open in IMG/M
3300012943\|Ga0164241_10575136	Not Available	814	Open in IMG/M
3300012960\|Ga0164301_10869409	Not Available	696	Open in IMG/M
3300012961\|Ga0164302_10302390	Not Available	1045	Open in IMG/M
3300012988\|Ga0164306_11694579	Not Available	548	Open in IMG/M
3300013306\|Ga0163162_11843265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300013307\|Ga0157372_11492166	Not Available	779	Open in IMG/M
3300013308\|Ga0157375_10171486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2317	Open in IMG/M
3300013308\|Ga0157375_12931422	Not Available	570	Open in IMG/M
3300014325\|Ga0163163_10270041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1752	Open in IMG/M
3300014745\|Ga0157377_10053463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2283	Open in IMG/M
3300014968\|Ga0157379_11824793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	598	Open in IMG/M
3300014969\|Ga0157376_12388005	Not Available	568	Open in IMG/M
3300015371\|Ga0132258_12423731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1314	Open in IMG/M
3300015372\|Ga0132256_100010711	All Organisms → cellular organisms → Bacteria	7936	Open in IMG/M
3300015372\|Ga0132256_100094963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2891	Open in IMG/M
3300015372\|Ga0132256_103121510	Not Available	557	Open in IMG/M
3300015373\|Ga0132257_102750068	Not Available	641	Open in IMG/M
3300015374\|Ga0132255_100209393	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2762	Open in IMG/M
3300015374\|Ga0132255_100618105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1603	Open in IMG/M
3300015374\|Ga0132255_100697317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1507	Open in IMG/M
3300019356\|Ga0173481_10160201	Not Available	938	Open in IMG/M
3300019361\|Ga0173482_10285902	Not Available	719	Open in IMG/M
3300022883\|Ga0247786_1009321	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1807	Open in IMG/M
3300023062\|Ga0247791_1095436	Not Available	501	Open in IMG/M
3300025899\|Ga0207642_10341911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	880	Open in IMG/M
3300025900\|Ga0207710_10076483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1545	Open in IMG/M
3300025908\|Ga0207643_10151341	Not Available	1391	Open in IMG/M
3300025908\|Ga0207643_10256138	Not Available	1079	Open in IMG/M
3300025908\|Ga0207643_11068492	Not Available	521	Open in IMG/M
3300025912\|Ga0207707_11272896	Not Available	592	Open in IMG/M
3300025917\|Ga0207660_10624235	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300025917\|Ga0207660_10846141	Not Available	747	Open in IMG/M
3300025935\|Ga0207709_10617735	Not Available	860	Open in IMG/M
3300025938\|Ga0207704_10281603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1264	Open in IMG/M
3300025949\|Ga0207667_11376458	Not Available	680	Open in IMG/M
3300026041\|Ga0207639_10146671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1972	Open in IMG/M
3300026121\|Ga0207683_11370731	Not Available	654	Open in IMG/M
3300028381\|Ga0268264_10167621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1984	Open in IMG/M
3300028589\|Ga0247818_10976277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300028809\|Ga0247824_10891034	Not Available	556	Open in IMG/M
3300028812\|Ga0247825_11222464	Not Available	549	Open in IMG/M
3300031562\|Ga0310886_10558783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	698	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	59.29%
Environmental	Environmental	40.71%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	59.29%
Terrestrial	Environmental → Terrestrial	40.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.01%
Roots	Host-Associated → Plants → Roots	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.24%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.27%
Loam	Environmental → Terrestrial → Soil → Loam	11.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.42%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.77%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	8.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	8.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.08%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.19%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.77%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1040046351	3300000956	Soil	MLRLVGLDITDDSILALVTRLRRADYDQQADTIVGALMSLQTEVVLTPSDQVAVLTVLDDPPAELEELRAVLQEQVGRVRDGLA*
JGI10216J12902_1139714924	3300000956	Soil	MIRLAGTDLTEDALLELVVRLRRAGLDEHADRIVGALMSMQTEVMVTEPDRVTILMVLENPPAGLAELRDALLQEAGSREGSRLT*
Ga0062593_1002542121	3300004114	Soil	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTDPDRVAILTVLDDPPDGLAELRGALLQEHARKRHSVV*
Ga0062590_1023475171	3300004157	Soil	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTHPDRVAILTVLDDPPDGLAELRGALLQEHARKRDGVV*
Ga0062592_1003589131	3300004480	Soil	MRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTHPDRVAILTVLDDPPDGLAELRGALLQEHARKRDSVV*
Ga0062591_1016362021	3300004643	Soil	MMRLAGIELTDESLLELVVRLRGADLDDQADRIVDALMSMQTEVTLSHPDRVAILTVLEDPPDGLAELRGVLREEQASRKREHT*
Ga0062594_1000973454	3300005093	Soil	MMRLAGIDLTEESLLQLVVRLRRAGLGEQADRIVDALMSMQTQVPLRHPDRVAILTVLDDPPDDLAELRGVLLAEHEGRVRGGLV*
Ga0062594_1004853131	3300005093	Soil	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTHPDRVAILTVLDDPPDGLAELRGALLQEHARKRDSVV*
Ga0066814_100142081	3300005162	Soil	MRLAGIELTDDSLLALVTRLRRADLDNQADRIVDALMSMQTEVTLPQPDRIAILTVLDDPPAGLEELRATLLQEHVGRVREELA*
Ga0070658_104103102	3300005327	Corn Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0070676_112447502	3300005328	Miscanthus Rhizosphere	GIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVGAERDGVV*
Ga0070683_1011975072	3300005329	Corn Rhizosphere	MLRLAGIEITEESLLELVVRLRRADLDDQADRIVDALMSMQTEVTLTHPDRVAVLTVLDEPPAGLEELRATLEADRDARVRDGLM*
Ga0070683_1012905941	3300005329	Corn Rhizosphere	GAAKRHRTRRLMMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0070670_1002548233	3300005331	Switchgrass Rhizosphere	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTHPDRVAILTVLDDPPDGLAELRGALL
Ga0070680_1001806113	3300005336	Corn Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVILRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0070680_1009851011	3300005336	Corn Rhizosphere	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVGPERHGVV*
Ga0070682_1012866271	3300005337	Corn Rhizosphere	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVGPERHGV
Ga0068868_1000516881	3300005338	Miscanthus Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAEL
Ga0070660_1005769601	3300005339	Corn Rhizosphere	MMRLAGIELTDESLLELVVRLRGADLDDQADRIVHALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0070668_1012601672	3300005347	Switchgrass Rhizosphere	LALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVGPERDGVV*
Ga0070675_1010761471	3300005354	Miscanthus Rhizosphere	RTRRLMMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0070674_1007327411	3300005356	Miscanthus Rhizosphere	MIRLGGIEITEESLFALVAIAAAGVDEQADRLLDALMSMQTEVTLAHPIVATLTVLDDPPDGLAELRGVLLAERAGHVPDGLV*
Ga0070673_1006345521	3300005364	Switchgrass Rhizosphere	LAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0070659_1012576851	3300005366	Corn Rhizosphere	LMMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0070701_102676782	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MIRLAGIEITEESLFALVVRLRRANLDDHADRIVDTLTSMQTEVPLTHPDRVAILAVLDDPPADLTELRAGLSQDVARARDALA*
Ga0070663_1003353703	3300005455	Corn Rhizosphere	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVGAERDGVV*
Ga0070678_1002825571	3300005456	Miscanthus Rhizosphere	LEITEESLFALVVRLRRAGLDDHADRIVDALTSMHTEVPLTHPDRVAILAVLDDPPADLTELRAGLS
Ga0070662_1015073111	3300005457	Corn Rhizosphere	MMRLAGIDLTEESLLQLVVRLRRAGLGEQADRIVDALMSMQTQVPLRHPDRVAILTVLDDPPDDLAELRGVLLAERAGRVPDGLV*
Ga0068867_1002634642	3300005459	Miscanthus Rhizosphere	MIRLGGIEITEESLFALVVRLRRANLDDHADRIVDALTSMQTEVPLTHPDRVAILAVLDDPPADLTELRAGLSQDVARARDALA*
Ga0070679_1014130981	3300005530	Corn Rhizosphere	ESLFALVVRLRRANLDDHADRIVDALTSMQTEVPLTHPDRVAILAVLDDPPADLTELRAGLSQDVARARDALA*
Ga0070679_1018555401	3300005530	Corn Rhizosphere	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVGPERDGVV*
Ga0068853_1015820061	3300005539	Corn Rhizosphere	EDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0070672_1017004742	3300005543	Miscanthus Rhizosphere	PGAAKRHRTRRLMMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0070693_1015806792	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVILRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0068854_1020111941	3300005578	Corn Rhizosphere	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLL
Ga0070702_1006719511	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	EITEESLFALVVRLRRANLDDHADRIVDTLTSMQTEVPLTHPDRVAILAVLDDPPADLTELRAGLSQDVARARDALA*
Ga0068859_1001499505	3300005617	Switchgrass Rhizosphere	MMRLAGIELTEDSLLALVVRLRSAGLGEQADRIVDALMSMQTEVTLRHADRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0068866_103781832	3300005718	Miscanthus Rhizosphere	AEPGTANTDRTRRLMIRLAGIEITEESLFALVVRLRRANLDDHADRIVDTLTSMQTEVPLTHPDRVAILAVLDDPPADLTELRAGLSQDVARARDALA*
Ga0068866_104218611	3300005718	Miscanthus Rhizosphere	AGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0068851_106842951	3300005834	Corn Rhizosphere	DSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0081455_103032082	3300005937	Tabebuia Heterophylla Rhizosphere	MMRLAGLDLTDDCLLALVTRLRRADLGHQADRIVDALMSQQSEVTLTPPDRVAILTVLDDPPPAGLEELRSVLLKEQAASEQTAL*
Ga0097621_1016473321	3300006237	Miscanthus Rhizosphere	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVG
Ga0074055_118299844	3300006573	Soil	MMRLAGIELTDDSLLALVTRLRRADLDNQADRIVDALMSMQTEVTLTQPDRIAILTVLDDPPAGLEELRATLLQEHVGRVREELA*
Ga0075428_1021139491	3300006844	Populus Rhizosphere	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRG
Ga0075425_1008437301	3300006854	Populus Rhizosphere	LALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0075425_1017251581	3300006854	Populus Rhizosphere	MIRLAGIEITEESLFALVVRLRRANLDDHADRIVDALTSMQTEVPLTHPDRVAILAVLDDPPADLTELRAGLSQDVARARDALA*
Ga0068865_1000382171	3300006881	Miscanthus Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHEAASKEAL*
Ga0074063_141636873	3300006953	Soil	MMRLAGIELTDDSLLALVTRLRRADLDNQADRIVDALMSMQTEVTLTQPDRIAILTVLEDRPAGLEELRAALLHEHVGRVRDGLA*
Ga0111539_103280711	3300009094	Populus Rhizosphere	MMRLAGIEITEESLLALVVRLRGADLDDQADRIVDALMSMQTEATLTHPDRVALLTVLDEPPDGLAELRRVRHEEQASREHI*
Ga0111539_104622581	3300009094	Populus Rhizosphere	MIRLAGIEITEESLLALVVRLRRAGLDERADRLVDALMSMQTEVTLPHPDRVAILTVLDDPPDGLSGLRAVLLQEHGARVP*
Ga0105245_109377843	3300009098	Miscanthus Rhizosphere	LLALVVRLRRADLDNQADRIVHALMSMQTEVTLTHPDRVAILTVLDDPPDGLAELRGALLQEHARKRDSVV*
Ga0105243_103729051	3300009148	Miscanthus Rhizosphere	SLFALVVRLRRAGLDDHADRIVDALTSMQTEVPLTHPDRVAILAVLDDPPADLTELRAGLSQDVARARDALA*
Ga0105243_113073561	3300009148	Miscanthus Rhizosphere	TRRLMMRLAGIELTEDSLLALVVRLLRAGLGEQADRIVDALMSMRTEVTLRHADPLAILTVLDDPPDGLAELRHVLLHDAASKEAL*
Ga0111538_101975672	3300009156	Populus Rhizosphere	MMRLAGIDLTEESLLRLVVRLRRAGLGVQADRIVDVLMSMQTQVPLRHPDRVAILTVLDDPPDDLAELRGVLLAEHEGRVRGGLV*
Ga0111538_130716922	3300009156	Populus Rhizosphere	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTHPDRVAILTVLDDPPDGLAELRGALLQEHARKRHSVV*
Ga0075423_108829231	3300009162	Populus Rhizosphere	MIRLAGIEITEESLFALVVRLRRANLDDHADRIVDALMSMQTEVPLTHPDRVAILAVLDDPPADLTELRAGLSQDVARARDALA*
Ga0105241_106391202	3300009174	Corn Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLDAQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0105242_101796091	3300009176	Miscanthus Rhizosphere	DSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILMVLDDPPEGLAELRHVLLRDAASKEAL*
Ga0134128_105558132	3300010373	Terrestrial Soil	GIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0134128_118723061	3300010373	Terrestrial Soil	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHADRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0105239_106174823	3300010375	Corn Rhizosphere	MLRLAGIEITEESLLELVVRLRRADLDDQADRIVDALMSMQTEVTLTHPDRGAILAVLDDPPADLTELRAGLSQDVARARDALA*
Ga0134124_116024331	3300010397	Terrestrial Soil	MMRLAGIELTEDSLLALVVRLRRAGLDEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0134127_102773723	3300010399	Terrestrial Soil	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDATSKEAL*
Ga0134127_113304361	3300010399	Terrestrial Soil	ELTEDSLLALVVRLRRAGLGEQADRIVDALMSLQTEVTLRHADRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0134123_117698351	3300010403	Terrestrial Soil	MMRLAGIELTEDSLLALVVRLRRAGLSEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0105246_100971511	3300011119	Miscanthus Rhizosphere	HRTRRLMMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVILRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0105246_116618131	3300011119	Miscanthus Rhizosphere	HRTRRLMMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0157285_103237281	3300012897	Soil	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHMLLHEAASKEAL*
Ga0157302_105131002	3300012915	Soil	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTDPDRVAILTVLDDPPDGLAELRGALLQEHARKRDGVV*
Ga0164241_100272195	3300012943	Soil	MLRIAGLDITDDAILALVTRLRRADHDEQADTIVGALMSLQTEVALTPPDQLVILTVLDEPPAGLDELRAVLQEHVGRVRDGLV*
Ga0164241_100799593	3300012943	Soil	MLRLAGLDITDDSILALVTRLRRAGLDEQADTIVGALMSLQTEVALTPRDRVAILTVLDEPPAALEELRGVLQEHVGGVRDGLA*
Ga0164241_105751361	3300012943	Soil	MMRLAGIELTDDCLLALVTRLRGADLDNQADRIVDALMSMQTEATLTHPDRVAILTVLDDPPAGLDELRATLLREQVARARGEMT*
Ga0164301_108694092	3300012960	Soil	MMRLAGIELTDDSLLALVTRLRRADLDNQADRIVDALMSMQTEVTLTQPDRIAILTVLDDPPAGLEELRATLLQEHVGRVCDGLA*
Ga0164302_103023902	3300012961	Soil	MMRLAGIELTDDSLLALVTRLRRADLDNQADRIVDALMSMQTEVTLTQPDRIAILTVLDDPPAGLEELHATLLQEHVGRVREELA*
Ga0164306_116945792	3300012988	Soil	MMRLAGIGLTDDSLLALVTRLRRADLDNQADRIVDALMSMQTEVTLTQPDRIAILTVLDDPPAGLEELRATLLQEHVGRVREELA*
Ga0163162_118432651	3300013306	Switchgrass Rhizosphere	TRRLMMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHADRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0157372_114921661	3300013307	Corn Rhizosphere	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTDPDRVAILTVLDDPPDGLAELRGALLQEHARKRDSVV*
Ga0157375_101714861	3300013308	Miscanthus Rhizosphere	RTRRLMMRLAGIELTEDSLLALVVRLRRADLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0157375_129314221	3300013308	Miscanthus Rhizosphere	MLRLAGIEITEESLLELVVRLRRADLDDQADRIVDALMSMQTEVTLTHPDRVAVLTVLDEPPAGLEELRATLEADRDARVR
Ga0163163_102700413	3300014325	Switchgrass Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVILRHPDRLAILTVLDDPPEGLAELRHMLLHDAASKEAL*
Ga0157377_100534635	3300014745	Miscanthus Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAA
Ga0157379_118247931	3300014968	Switchgrass Rhizosphere	MIRLGGIEITEESLFALVVRLRRANLDDHADRIVDTLTSMQTEVPLTHPDRVAILAVLDDPPADLTELRAGLSQDVARARDALA*
Ga0157376_123880051	3300014969	Miscanthus Rhizosphere	ALVVRLRRAGLDERADRLVDALMSMQTEVTLPHPDRVAILTVLDDPPDGLAELRGVLHRERVGPERDGVV*
Ga0132258_124237311	3300015371	Arabidopsis Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTKVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL*
Ga0132256_10001071116	3300015372	Arabidopsis Rhizosphere	RLAGIEIAEESLLALVVRLRGADLDDQADRIVDALMSMQTEATLTHPDRVALLTVLDEPPDGLAELRRVLHEGQASREHI*
Ga0132256_1000949632	3300015372	Arabidopsis Rhizosphere	MIRLAGIEITEESLLELVVRLRRAGLDDHADRIVDALMSMQTEVPLTHPDRVAILTVLDDPPVDLTELRAGLSQDVARARDALA*
Ga0132256_1031215101	3300015372	Arabidopsis Rhizosphere	MLRLAGIEITEESLLELVVRLRRADLDDQADRIVDALMSMQTEVTLTHPDRVAVLTVLDEPPAGLEGLRATLEADRDARVRDGLM*
Ga0132257_1027500682	3300015373	Arabidopsis Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASMEAL*
Ga0132255_1002093933	3300015374	Arabidopsis Rhizosphere	MMRLAGIEITEESLLALVVRLRGADLDDQADRIVDALMSMQTEATLTHPDRVALLTVLDEPPDGLAELRRVLHEEQASREHI*
Ga0132255_1006181053	3300015374	Arabidopsis Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDA
Ga0132255_1006973172	3300015374	Arabidopsis Rhizosphere	MIRLAGIEITEESLLELVVRLRRAGLDDHADRIVDALMSMQTEVPLTHPDRVAILTVLDDPPVDLTELRAGLSQHVAPARDALA*
Ga0173481_101602012	3300019356	Soil	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTHPDRVAILTVLDDPPDGLAELRG
Ga0173482_102859021	3300019361	Soil	MMRLAGIDLTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTDPDRVAILTVLDDPPDGLAELRGALLQEHARKRHSVV
Ga0247786_10093213	3300022883	Soil	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTHPDRVAILTVLDDPPDGLAELRGALLQEHARKRDGVV
Ga0247791_10954362	3300023062	Soil	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTHPDRVAILTVLDDPPDGLAELRGALLQEHARKRDSVV
Ga0207642_103419112	3300025899	Miscanthus Rhizosphere	MLRLAGIEITEESLLELVVRLRRADLDDQADRIVDALMSMQTEVTLTHPDRVAVLTVLDEPPAGLEELRATLEADRDARVRDGLM
Ga0207710_100764832	3300025900	Switchgrass Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL
Ga0207643_101513413	3300025908	Miscanthus Rhizosphere	MMRLAGIDLTEESLLQLVVRLRRAGLGEQADRIVDALMSMQTQVPLRHPDRVAILTVLDDPPDDLAELRGVLLAEHEGRVRGGLV
Ga0207643_102561382	3300025908	Miscanthus Rhizosphere	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVGAERDGVV
Ga0207643_110684921	3300025908	Miscanthus Rhizosphere	MKPQGNAAPGVALAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTHPDRVAILTVLDDPPDGLAELRGALLQEHARKRHSVV
Ga0207707_112728961	3300025912	Corn Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHADRLAILTVLDDPPEGLAELRHVLLHDAASKEAL
Ga0207660_106242352	3300025917	Corn Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVILRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL
Ga0207660_108461411	3300025917	Corn Rhizosphere	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVGPERHGVV
Ga0207709_106177351	3300025935	Miscanthus Rhizosphere	MIRLAGIEITEESLFALVVRLRRANLDDHADRIVDTLTSMQTEVPLTHPDRVAILAVLDDPPADLTELRAGLSQDVARARDALA
Ga0207704_102816031	3300025938	Miscanthus Rhizosphere	MMRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHEAASKEAL
Ga0207667_113764582	3300025949	Corn Rhizosphere	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMQTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVGPERDGVV
Ga0207639_101466713	3300026041	Corn Rhizosphere	MMRLAGIELTEDSLLALVVRLRSAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL
Ga0207683_113707312	3300026121	Miscanthus Rhizosphere	MLRLAGIEITEESLLELVVRLRRADLDDQADRIVDALMSMQTEVTLTHPDRVAVLTVLDEPPAGLEELRATLEADRDAR
Ga0268264_101676215	3300028381	Switchgrass Rhizosphere	MRLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRNALL
Ga0247818_109762772	3300028589	Soil	AGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL
Ga0247824_108910341	3300028809	Soil	MLRLAGIDLTEESVLALVVRLRRADLDEQADRIVHELMSMRTEVTLRDPDRIAILTVLDDPPDGLAELRGVLLRERVGAERD
Ga0247825_112224642	3300028812	Soil	LALVVRLRRAGLDEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL
Ga0310886_105587831	3300031562	Soil	RLAGIELTEDSLLALVVRLRRAGLGEQADRIVDALMSMQTEVTLRHPDRLAILTVLDDPPEGLAELRHVLLHDAASKEAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082834

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences