Metagenome / Metatranscriptome Family F082777

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082777
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	47 residues
Representative Sequence	MRRISAYLIFSLVFLGLQASTKAQDILVPAGTLLRCTLDEPNFSSATAD
Number of Associated Samples	75
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.69 %
% of genes near scaffold ends (potentially truncated)	98.23 %
% of genes from short scaffolds (< 2000 bps)	85.84 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.690 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (58.407 % of family members)
Environment Ontology (ENVO)	Unclassified (53.982 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.177 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.05% β-sheet: 0.00% Coil/Unstructured: 51.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF14366	DUF4410	8.85
PF08327	AHSA1	7.96
PF00115	COX1	3.54
PF12840	HTH_20	2.65
PF12710	HAD	2.65
PF03781	FGE-sulfatase	1.77
PF01156	IU_nuc_hydro	1.77
PF03793	PASTA	0.88
PF03009	GDPD	0.88
PF12704	MacB_PCD	0.88
PF04519	Bactofilin	0.88
PF04952	AstE_AspA	0.88
PF01408	GFO_IDH_MocA	0.88
PF12706	Lactamase_B_2	0.88
PF13360	PQQ_2	0.88
PF02163	Peptidase_M50	0.88
PF01569	PAP2	0.88
PF01436	NHL	0.88
PF00106	adh_short	0.88
PF14332	DUF4388	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	1.77
COG1957	Inosine-uridine nucleoside N-ribohydrolase	Nucleotide transport and metabolism [F]	1.77
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	0.88
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.69 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.69 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.69 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.01 %
Unclassified	root	N/A	5.31 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.54 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.19 %
Unclassified	root	N/A	5.31 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.65 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.73 %
Unclassified	root	N/A	5.31 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.42 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.77 %
Longimicrobiia	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia	0.88 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.88 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.73 %
Unclassified	root	N/A	5.31 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.42 %
Longimicrobiales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.88 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.73 %
Unclassified	root	N/A	5.31 %
Longimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.88 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.88 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.73 %
Unclassified	root	N/A	5.31 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.88 %
Longimicrobium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium	0.88 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.88 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.73 %
Unclassified	root	N/A	5.31 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.88 %
Longimicrobium terrae	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium → Longimicrobium terrae	0.88 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.88 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001089\|JGI12683J13190_1002010	Not Available	2823	Open in IMG/M
3300001154\|JGI12636J13339_1028911	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300001593\|JGI12635J15846_10065661	Not Available	2704	Open in IMG/M
3300001593\|JGI12635J15846_10746184	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300002245\|JGIcombinedJ26739_100976434	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300002245\|JGIcombinedJ26739_101300764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300002886\|JGI25612J43240_1078555	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300003367\|JGI26338J50219_1025344	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300005547\|Ga0070693_100132410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1560	Open in IMG/M
3300006354\|Ga0075021_10949813	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300007258\|Ga0099793_10049419	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300007265\|Ga0099794_10017143	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3224	Open in IMG/M
3300007265\|Ga0099794_10065023	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1778	Open in IMG/M
3300007265\|Ga0099794_10657911	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300009038\|Ga0099829_11364688	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300009088\|Ga0099830_10069011	All Organisms → cellular organisms → Bacteria	2557	Open in IMG/M
3300009088\|Ga0099830_11095002	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300009088\|Ga0099830_11424247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300009089\|Ga0099828_10182166	All Organisms → cellular organisms → Bacteria	1869	Open in IMG/M
3300009089\|Ga0099828_11019765	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	737	Open in IMG/M
3300009090\|Ga0099827_11302597	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	632	Open in IMG/M
3300010159\|Ga0099796_10110255	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1047	Open in IMG/M
3300010159\|Ga0099796_10348889	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300011269\|Ga0137392_10743355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	811	Open in IMG/M
3300011269\|Ga0137392_11081848	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300011271\|Ga0137393_10012289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5979	Open in IMG/M
3300011271\|Ga0137393_11479996	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300011271\|Ga0137393_11556738	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300011271\|Ga0137393_11626860	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300012169\|Ga0153990_1105670	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300012189\|Ga0137388_10133484	All Organisms → cellular organisms → Bacteria	2178	Open in IMG/M
3300012198\|Ga0137364_10600722	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300012202\|Ga0137363_11223351	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300012202\|Ga0137363_11391080	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300012203\|Ga0137399_10140396	All Organisms → cellular organisms → Bacteria → Acidobacteria	1919	Open in IMG/M
3300012203\|Ga0137399_10643318	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300012203\|Ga0137399_10923899	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300012203\|Ga0137399_10966097	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300012203\|Ga0137399_11278219	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300012205\|Ga0137362_10062342	All Organisms → cellular organisms → Bacteria	3067	Open in IMG/M
3300012205\|Ga0137362_10803458	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300012207\|Ga0137381_11088627	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300012285\|Ga0137370_10429553	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300012349\|Ga0137387_10996933	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300012361\|Ga0137360_10185970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1673	Open in IMG/M
3300012362\|Ga0137361_10020025	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5070	Open in IMG/M
3300012362\|Ga0137361_10269603	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300012362\|Ga0137361_10627127	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300012362\|Ga0137361_11493475	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300012362\|Ga0137361_11704542	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300012363\|Ga0137390_11582540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	594	Open in IMG/M
3300012582\|Ga0137358_10148625	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300012683\|Ga0137398_10336364	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300012685\|Ga0137397_11137542	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300012918\|Ga0137396_10266849	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300012923\|Ga0137359_10328482	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300012924\|Ga0137413_10604092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300012927\|Ga0137416_10607227	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300015054\|Ga0137420_1123678	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300015245\|Ga0137409_11566158	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300015264\|Ga0137403_10060992	All Organisms → cellular organisms → Bacteria → Acidobacteria	3852	Open in IMG/M
3300015264\|Ga0137403_10336317	All Organisms → cellular organisms → Bacteria → Acidobacteria	1399	Open in IMG/M
3300018482\|Ga0066669_10048222	All Organisms → cellular organisms → Bacteria	2671	Open in IMG/M
3300018482\|Ga0066669_10496622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1056	Open in IMG/M
3300018482\|Ga0066669_11344907	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300019789\|Ga0137408_1174184	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300020199\|Ga0179592_10403548	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300020579\|Ga0210407_11335530	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300020579\|Ga0210407_11428092	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300020583\|Ga0210401_10567922	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300021046\|Ga0215015_10528554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300021046\|Ga0215015_10699023	All Organisms → cellular organisms → Bacteria → Proteobacteria	1510	Open in IMG/M
3300021088\|Ga0210404_10259959	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300021088\|Ga0210404_10762203	Not Available	552	Open in IMG/M
3300021170\|Ga0210400_11655134	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300021559\|Ga0210409_11598615	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300024330\|Ga0137417_1372294	All Organisms → cellular organisms → Bacteria	1929	Open in IMG/M
3300024331\|Ga0247668_1043234	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium → Longimicrobium terrae	919	Open in IMG/M
3300025922\|Ga0207646_10843731	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300026304\|Ga0209240_1153121	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300026361\|Ga0257176_1010312	All Organisms → cellular organisms → Bacteria → Acidobacteria	1217	Open in IMG/M
3300026482\|Ga0257172_1040241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300026508\|Ga0257161_1128524	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300026514\|Ga0257168_1074957	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300026514\|Ga0257168_1116135	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300026538\|Ga0209056_10554507	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300026555\|Ga0179593_1072300	All Organisms → cellular organisms → Bacteria → Acidobacteria	3175	Open in IMG/M
3300026557\|Ga0179587_10074182	All Organisms → cellular organisms → Bacteria	2008	Open in IMG/M
3300027603\|Ga0209331_1073836	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300027651\|Ga0209217_1087296	Not Available	901	Open in IMG/M
3300027655\|Ga0209388_1070848	All Organisms → cellular organisms → Bacteria → Acidobacteria	1004	Open in IMG/M
3300027727\|Ga0209328_10275074	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300027846\|Ga0209180_10103601	All Organisms → cellular organisms → Bacteria	1623	Open in IMG/M
3300027846\|Ga0209180_10174360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1240	Open in IMG/M
3300027862\|Ga0209701_10667989	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300027903\|Ga0209488_10115510	All Organisms → cellular organisms → Bacteria → Acidobacteria	2018	Open in IMG/M
3300027903\|Ga0209488_10118735	All Organisms → cellular organisms → Bacteria	1989	Open in IMG/M
3300028047\|Ga0209526_10261276	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300028047\|Ga0209526_10614930	Not Available	694	Open in IMG/M
3300028536\|Ga0137415_10054036	All Organisms → cellular organisms → Bacteria	3884	Open in IMG/M
3300028536\|Ga0137415_10095665	All Organisms → cellular organisms → Bacteria	2823	Open in IMG/M
3300028536\|Ga0137415_10406861	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300028536\|Ga0137415_11303291	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300030991\|Ga0073994_11975854	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300031057\|Ga0170834_104691738	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300031718\|Ga0307474_10203579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1507	Open in IMG/M
3300031718\|Ga0307474_10209719	All Organisms → cellular organisms → Bacteria	1485	Open in IMG/M
3300031720\|Ga0307469_10566684	All Organisms → cellular organisms → Bacteria → Acidobacteria	1009	Open in IMG/M
3300031754\|Ga0307475_10259735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1392	Open in IMG/M
3300031754\|Ga0307475_10456565	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300031754\|Ga0307475_11158450	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300031962\|Ga0307479_11233695	Not Available	710	Open in IMG/M
3300032180\|Ga0307471_100129798	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2372	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.35%
Aquatic	Environmental → Aquatic	1.77%
Fungi	Host-Associated → Fungi	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.35%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Sediment	Environmental → Aquatic → Sediment	0.89%
Mycelium	Host-Associated → Fungi → Mycelium	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.84%
Loam	Environmental → Terrestrial → Soil → Loam	11.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	60.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	58.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300003367	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012169	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG	Host-Associated	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12683J13190_10020101	3300001089	Forest Soil	MRRISAYLILSVVFLGLQTNTKAQDILVPAGTLLRCTLDEPNFSSATA
JGI12636J13339_10289111	3300001154	Forest Soil	MRRIFAYLIFSIVFLGLTTSTKAQDILVPAGTLIRCTLDEPNFSSATADIGDPVICH
JGI12635J15846_100656611	3300001593	Forest Soil	MRRISAYLILSVVFLGLQTNTKAQDILVPAGTLLRCTLDEPNFSSAT
JGI12635J15846_107461842	3300001593	Forest Soil	MRRISAYLTISVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSK
JGIcombinedJ26739_1009764341	3300002245	Forest Soil	MRRIFAYLAVSVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSATADI
JGIcombinedJ26739_1013007642	3300002245	Forest Soil	MRRISMYLILILSFVFLGLPSSAMAQDILVPAGTLLRCTLDE
JGI25612J43240_10785552	3300002886	Grasslands Soil	MRRITAYLIFSLVFLGLQANTKAQDILVPAGTLLRCTLEEPN
JGI26338J50219_10253442	3300003367	Bog Forest Soil	MRRISAYLAFSLLLLGVQASTRAQDILVPAGTLLHCTLDEPNFSSATADVGDPVVXHLNSLR
Ga0070693_1001324101	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRRSTGYLAMCLLIVGMASSTKAQDILVPAGTLLRCTMDEPNFSSKTADIGDPV
Ga0075021_109498131	3300006354	Watersheds	MRRISTCLLFGLLFLVFQSGSARAQDILVPAGTLLHCTLD
Ga0099793_100494191	3300007258	Vadose Zone Soil	MRRISTYLIFSLVILGLQASAKAQDILVPAGTLLRCTLDEPNFS
Ga0099794_100171431	3300007265	Vadose Zone Soil	MRRISAYLIFSLVFLGLPASTKAQDILVPAGTLLRCTLDEPNFSFAFDDVGAP
Ga0099794_100650231	3300007265	Vadose Zone Soil	MRRISMYLILILSFVFLGLPSSAMAQDILVPAGTLLKCTLDEPN
Ga0099794_106579111	3300007265	Vadose Zone Soil	MRRISTYLIFSLVILGLQATAKAQDLLVPAGTLIRCTLDEPNFSSA
Ga0099829_113646881	3300009038	Vadose Zone Soil	MRRICAYLAFSVLLLAMQASTKAQDILVPAGTLLRCTLDEPN
Ga0099830_100690111	3300009088	Vadose Zone Soil	MRRISAYLIFSLVFLGLQASTKAQDILVPAGTLLRCTLDEPNFSSATAD
Ga0099830_110950021	3300009088	Vadose Zone Soil	MRRICAYLAFSVLFLGVQTSTRAQDILVPAGTLLRCTLD
Ga0099830_114242471	3300009088	Vadose Zone Soil	MRRITAYLIFSLVFLGLQENTKAHDLLVLAGTLLD
Ga0099828_101821664	3300009089	Vadose Zone Soil	MRRICAYLTFSALFLGVQTSTRAQDILVPAGTLLRCTLDEPNFSSKTAD
Ga0099828_110197651	3300009089	Vadose Zone Soil	MRRIFGFLIFTLAILFGLQVSARAQDILVPAGTLLRCT
Ga0099827_113025971	3300009090	Vadose Zone Soil	MRRISAYLIFSLVILGLQASAQAQDILVPAGTLIRCTLDEPNFSSATADIGDPVVC
Ga0099796_101102551	3300010159	Vadose Zone Soil	MRRICAYLAVSLLFLGVQASTKAQDILVPAGTLLHCTLDEPNFSSATADIGDPVI
Ga0099796_103488892	3300010159	Vadose Zone Soil	MRRFLLYLAVLVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSA
Ga0137392_107433551	3300011269	Vadose Zone Soil	MRRISAYLIFSLVFLALQASTKAQDILVPAGTLLRCTLDEPN
Ga0137392_110818481	3300011269	Vadose Zone Soil	MRRICAYLAFSVLFLGVQTSTRAQDILVPAGTLLRCTLDEPNF
Ga0137393_100122896	3300011271	Vadose Zone Soil	MRRISAYLIFSLVFLGVQASTKAQDILVPAGTLLKCTLDEPNFSSATAEVGDPVVCHL
Ga0137393_114799961	3300011271	Vadose Zone Soil	MYLILILSFVFLGLQSSAMAQDILVPAGTLIRCTLDEPNFSSAT
Ga0137393_115567381	3300011271	Vadose Zone Soil	MRRIAAYLIFSLVFLGLQANTKAQDILVPAGTLLRCTLDEPN
Ga0137393_116268602	3300011271	Vadose Zone Soil	MRRISAYLAISVLFLGVQASTKAQDILVPAGTLLRCTLDE
Ga0153990_11056702	3300012169	Attine Ant Fungus Gardens	MRRIYLYLAVAVLFFGVQVSTKAQDILVPAGTLLRCTMDEPDFSSKTADIGD
Ga0137388_101334843	3300012189	Vadose Zone Soil	MRRIFSYLAVSALFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSATVDIGD
Ga0137364_106007221	3300012198	Vadose Zone Soil	MRRISTYLIFALVILGLQASAKAQDILVPAGTLIRCTLDEPNFSSATAD
Ga0137363_112233511	3300012202	Vadose Zone Soil	MRRISAYLIFSLVFLGVQTSTKAQDILVPAGTLLKCTLDEPNFS
Ga0137363_113910801	3300012202	Vadose Zone Soil	MRRISAYLAIAVLFLGVQASTKAQDILVPAGTLLR
Ga0137399_101403961	3300012203	Vadose Zone Soil	MRRISVHLIFSLVFLGVQASTKAQDILVPAGTLLK
Ga0137399_106433181	3300012203	Vadose Zone Soil	MRRISSFLIFSLVFLGLQASAKAQDILVPAGTLLRCTLDEPNFSSATAD
Ga0137399_109238992	3300012203	Vadose Zone Soil	MYLILILSFVFLGLPSSAMAQDILVPAGTLLRCTLDEPNFSSATADIGDPVICHL
Ga0137399_109660971	3300012203	Vadose Zone Soil	MRRISAYLIFSLVFLGIQASAQAQDILVPAGTLLKCTLDEPNFSSATADVGDPVI
Ga0137399_112782191	3300012203	Vadose Zone Soil	MRRIPAYLIFSLVFLGLQTSAKAQDILVPAGTLLKCTL
Ga0137362_100623426	3300012205	Vadose Zone Soil	VLFLGVQASTKAQDILVPAGTLLRCTLDEPDFSSKTADIGDPVVCH
Ga0137362_108034582	3300012205	Vadose Zone Soil	MRRISAYLAIAVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSKTADIGDPVV
Ga0137381_110886271	3300012207	Vadose Zone Soil	MRRIFTYLIFALVILGLQASAKAQDILVPAGTLIRCTLDEPNFSSATADIG
Ga0137370_104295532	3300012285	Vadose Zone Soil	MRRISTYLIFALVILGLQASAKAQDILVPAGTLIRCTLDE
Ga0137387_109969332	3300012349	Vadose Zone Soil	MRRISTYLIFSLVILGLQASAKAQDILVPAGTLIRCTL
Ga0137360_101859701	3300012361	Vadose Zone Soil	MRRISTYLIFALVILGLQASAKAQDILVPAGTLIRCTLDEPNFSSPAPILATP*
Ga0137361_100200251	3300012362	Vadose Zone Soil	MRRISAYLAISVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFS
Ga0137361_102696031	3300012362	Vadose Zone Soil	MYLILILSFVFLGLPWSAMAQDILVPAGTLLRCTLDEPNFSSATAD
Ga0137361_106271271	3300012362	Vadose Zone Soil	MRRISAYLAIAVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSKTAD
Ga0137361_114934751	3300012362	Vadose Zone Soil	MRRITAYLIFSLVFLGLQANTKAQDILVPAGTLLRCTLDEPNFSSATADIGD
Ga0137361_117045421	3300012362	Vadose Zone Soil	MKRIFVYLIFSLVFLGLQASTKAQDILVPAGTLLRCTLDEPNFSSATADIGDP
Ga0137390_115825402	3300012363	Vadose Zone Soil	MRRICAYLAFSVLLLAMQASTKAQDILVPAGTLLRCTLD
Ga0137358_101486251	3300012582	Vadose Zone Soil	MYLILILSFVFLGLPSSAMAQDILVPAGTLLRCTLDEPNF
Ga0137398_103363641	3300012683	Vadose Zone Soil	MYLILILSFVFLGLPSSAMAQDILVPAGTLLRCTLDEPNFSSASADIGDPVICHLSSL
Ga0137397_111375421	3300012685	Vadose Zone Soil	MRRISSYLIFSLVFLGLQVSAKAQDILVPAGTLLRCTLDEPN
Ga0137396_102668492	3300012918	Vadose Zone Soil	MRRISTYLIFSLMILGLQASAKAQDILVPAGTLLRCTLDEPNFSSATTDIGD
Ga0137359_103284821	3300012923	Vadose Zone Soil	MWRISAYLAISVLFLGVQASTKAQDILVPAGTLLRCTLDEPDFSSKTADIGDPVVCH
Ga0137413_106040922	3300012924	Vadose Zone Soil	MRRISAYLIFSLVFLGLQASTKAQDILVPAGTLLRCTLDEPNFSSATADIGD
Ga0137416_106072272	3300012927	Vadose Zone Soil	MRRFLLYLAVSVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSATA
Ga0137420_11236782	3300015054	Vadose Zone Soil	MRRISAYLIFSLAFLWLTANVQAQDILVPAGTLLRCTLDEPNFSSATADIGDPVICH
Ga0137409_115661581	3300015245	Vadose Zone Soil	MRRISAYLIFSLVFLGVQASTKAQDTLVPAGTLLKCTLD
Ga0137403_100609921	3300015264	Vadose Zone Soil	MRRISAYLILSLAFLWLTANAQAQDILVPAGTLLR
Ga0137403_103363171	3300015264	Vadose Zone Soil	MRRISGCLIFSLAFLWLTANAQAQDILVPAGTLLR
Ga0066669_100482223	3300018482	Grasslands Soil	MRRISTYLIFASVILGLQASAKAQDILVPAGTLIRCTLDEPNFSSATADIGD
Ga0066669_104966221	3300018482	Grasslands Soil	MRRISTYLIFALVILGLQASAKAQDILVPAGTLIRCTLDEPNFSSATADIGD
Ga0066669_113449071	3300018482	Grasslands Soil	MRRIFLCLIVSFAFLFAAASSNAQSNIVVPAGTLLRCTLDEPNFSSATA
Ga0137408_11741841	3300019789	Vadose Zone Soil	MRRISAYLIFSLVFLGVQPSTKAQDILVPAGTLLKCTLDEPNF
Ga0179592_104035482	3300020199	Vadose Zone Soil	MRRFLSYLAVSVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSA
Ga0210407_113355301	3300020579	Soil	MRRISAYLIFSLVFLGLQASAQAQDILVPAGTLLKCT
Ga0210407_114280921	3300020579	Soil	MRRISAYLGISVLFLGVQPSTKAQDILVPAGTLLRCTLDEPDF
Ga0210401_105679222	3300020583	Soil	MRRFFAYLAVAVLFLGVQTSTKAQDILVPAGTLLRCTLDEPNFSSKTADIG
Ga0215015_105285541	3300021046	Soil	MRRISTYLIFSLVFLGLSASTKAQDILVPAGTLLRCTLDEPNFSSATADIGDPVI
Ga0215015_106990233	3300021046	Soil	MRRICAYLSFSMLFLGVQASTRAQDILVPAGTLLRCTLDEPNFSSATADIGDPV
Ga0210404_102599592	3300021088	Soil	MRRISAYLTISVLFLAVPASTKAQDILVPAGTLLRCTLDEPNFSSKTADIGDPVVCHLAA
Ga0210404_107622031	3300021088	Soil	MRRISAYLAISVLFVCVPSSTKAQDILVPAGTLMHCT
Ga0210400_116551341	3300021170	Soil	MRRIFAYLAVFVLFLGVQASTKAQDILVPAGTLLRCTMDEPNFSSKTADVGDP
Ga0210409_115986152	3300021559	Soil	MRRIAAYLIFTLVFLGLQANTKAQDILVPAGTLLRCTLDEPNFSSATADIGDPVICHL
Ga0137417_13722942	3300024330	Vadose Zone Soil	MRRISAYLIFSLAFLWLTANVQAQDILVPAGTLLRCTLDEPNFSSATADMVTR
Ga0247668_10432341	3300024331	Soil	MRRFFLLPVVLLLLLFVSASANAQDILVPAGTLLRCTMSEPNFSSATAQIGD
Ga0207646_108437311	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRRILSYLAVSLLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSATAD
Ga0209240_11531212	3300026304	Grasslands Soil	MKRIFVYLIFSLVFLGLQASTKAQDILVPAGTLLRCTLDE
Ga0257176_10103121	3300026361	Soil	MRRITAYLIFSLVFLGLQANTKAQDILVPAGTLLRCTLDEPNFSSA
Ga0257172_10402412	3300026482	Soil	MRRISTYLIFSLVILGLQASAKAQDILVPAGTLLRCTLDEPNFSSASADIGDPVICH
Ga0257161_11285241	3300026508	Soil	MRRIYLYLAVLGLLLGAQASTKAQDILVPAGTLLRCTMDEPDFSS
Ga0257168_10749571	3300026514	Soil	MRRIYLYLAVFGLFLGAQASTKAQDILVPAGTLLRCTMDEPDLSSKTADI
Ga0257168_11161352	3300026514	Soil	MRRISAYLIFSLVFLGLPASTKAQDILVPAGTLLRCTLDEPNFS
Ga0209056_105545071	3300026538	Soil	MRRISTYLIFSLVILGLQASAKAQDILVPAGTLIRCTLDEPNFSSATADI
Ga0179593_10723003	3300026555	Vadose Zone Soil	MRRISAYLIFSLVFLGLQASTKAQDILVPAGTLLRCTLDEPTFPQLLPILVTR
Ga0179587_100741823	3300026557	Vadose Zone Soil	MRRFLLYVAVSVLLLGVQASTKAQDILVPAGTLLRCTLDEPN
Ga0209331_10738361	3300027603	Forest Soil	MRRISAYLAISVLFVSVPASMKAQDILVPAGTLLHCTMDEPNFSS
Ga0209217_10872961	3300027651	Forest Soil	MRRISAYLILSVVFLGLQTSTKAQDILVPAGTLLRCT
Ga0209388_10708481	3300027655	Vadose Zone Soil	MRHIHAFLIFSLLFLGLQASTQAQEILVPAGTLLRCTLDEPNFSSATADI
Ga0209328_102750741	3300027727	Forest Soil	MRRIAAYLIFSLLFLGFTPSTKAQDILVPAGTLLHCTLDEPNFSSATADIGDPVICHLSS
Ga0209180_101036011	3300027846	Vadose Zone Soil	MRRISAYLAISVLFLGVQASTKAQDILVPAGTLLRCTLDEPDFSSKTADIGDPVV
Ga0209180_101743602	3300027846	Vadose Zone Soil	MRRIFAYLILALVFLGLPASTKAQDILVPAGTLIRCTLDE
Ga0209701_106679892	3300027862	Vadose Zone Soil	MRRISAYLIFSLVFLGLQASTKAQDILVPAGTLLRCTLDEPNFS
Ga0209488_101155101	3300027903	Vadose Zone Soil	MRRFLLYLAVSVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSATADIGDPVICHLS
Ga0209488_101187351	3300027903	Vadose Zone Soil	MRRFLLYLAASVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSATAD
Ga0209526_102612761	3300028047	Forest Soil	MRRIFAYLAVSVLFLGVQASTKAQDILVPAGTLLRCTLDEP
Ga0209526_106149301	3300028047	Forest Soil	MRRISTYLILILSFVFLGLQSSAMAQDILVPAGTLIRCTLD
Ga0137415_100540367	3300028536	Vadose Zone Soil	MRRISSYLIFSLVFLGLQVSAKAQDILVPAGTLLRCTLDEPNFSSATADIGDPVICH
Ga0137415_100956654	3300028536	Vadose Zone Soil	MRRISAYLGISVLFLSVQASTKAQDILVPAGTLLRCTLDEPDFSSKTVDIGD
Ga0137415_104068611	3300028536	Vadose Zone Soil	MRRISAYLIFPLVFLALQASTKAQDILVPAGTLLKCTLDEPNFSSATADVGDPVVCHLS
Ga0137415_113032911	3300028536	Vadose Zone Soil	MRRISAYLIFSLVFLGVQPSTKAQDILVPAGTLLKCTLDEPNFSSATSEVGDPV
Ga0073994_119758541	3300030991	Soil	MRRFLSYLAVSVLFLGVQTSTKAQDILVPAGTLLRCTLDEPNF
Ga0170834_1046917381	3300031057	Forest Soil	MRRISAYLAISVLFLGVQASTKAQDILVPAGTLLRCTLDEPNFSSATADIG
Ga0307474_102035793	3300031718	Hardwood Forest Soil	MRQIYLYLAVFALFFGVQMSTKAQDILVPAGTLLHCT
Ga0307474_102097191	3300031718	Hardwood Forest Soil	MRRISACLIFSLVFLGLTANAQAQDILVPAGTLLRC
Ga0307469_105666841	3300031720	Hardwood Forest Soil	MRRILAYLIFSLLFLGLQASTQAQEILVPAGTLLRCTLDEPNFSSATADVGDP
Ga0307475_102597353	3300031754	Hardwood Forest Soil	MRRISAYLTISVLFLSVQASTKAQDILVPAGTLLRCTLDEPDFSSKTADIGD
Ga0307475_104565652	3300031754	Hardwood Forest Soil	MRRICAYLAVAVLFFGVPASTKAQDILVPAGTLLRCTM
Ga0307475_111584501	3300031754	Hardwood Forest Soil	MRRISAYLIFALVFLGLSASTKAQDILVPAGTLLRCTLDEPNFSSATADIGDPVICHLSS
Ga0307479_112336952	3300031962	Hardwood Forest Soil	MRRISAYLIFSLVFLGLPASAKAQDILVPAGTLLRCTLDEPNFSSATADIGDPV
Ga0307471_1001297981	3300032180	Hardwood Forest Soil	MRRISVCLIFSLVFLALQASAKAQDILVPAGTLLKCTLDEPNFSSATADIGDPVICHL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082777

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences