NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F082657

Metagenome / Metatranscriptome Family F082657

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F082657
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 118 residues
Representative Sequence MGRRGLPVSVAALAVCAALGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGY
Number of Associated Samples 93
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 56.25 %
% of genes near scaffold ends (potentially truncated) 98.23 %
% of genes from short scaffolds (< 2000 bps) 94.69 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (99.115 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(38.053 % of family members)
Environment Ontology (ENVO) Unclassified
(31.858 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(56.637 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.166.168.170.172.174.176.178.180.182.184.186.188.190.192.194.196.198.200.202.204.206.208.210.212.214.216.218.220.222.224.226.228.230.232.234.
1N57_05366600
2AL20A1W_11536252
3AL20A1W_13942162
4A21PFW6_10027751
5A3PFW1_100897441
6A1565W1_108959451
7A10PFW1_122326481
8Ga0062589_1017158481
9Ga0066678_100621301
10Ga0066676_102530542
11Ga0070690_1010938911
12Ga0070670_1020682151
13Ga0070666_106421691
14Ga0070687_1010366241
15Ga0070678_1013029822
16Ga0070699_1012267221
17Ga0070699_1019475962
18Ga0073909_101998082
19Ga0070684_1022644482
20Ga0070693_1015421051
21Ga0066699_101809991
22Ga0066703_101646511
23Ga0074050_114657991
24Ga0105247_108384861
25Ga0066709_1021030282
26Ga0134088_103106931
27Ga0120167_10823411
28Ga0120152_10209343
29Ga0137389_108662582
30Ga0137388_120267121
31Ga0137365_110043152
32Ga0137376_102583722
33Ga0137378_105330362
34Ga0137378_110933331
35Ga0137377_101900843
36Ga0137377_102827721
37Ga0137377_107684331
38Ga0137377_110872162
39Ga0137370_105192011
40Ga0137387_102636681
41Ga0137386_106462032
42Ga0137371_103634771
43Ga0137397_104924591
44Ga0157283_100613331
45Ga0157308_100881031
46Ga0137394_112996801
47Ga0137416_108978222
48Ga0137407_120280392
49Ga0164300_103414442
50Ga0164301_100873151
51Ga0164301_108049161
52Ga0164302_108357811
53Ga0134077_103603942
54Ga0134110_106134821
55Ga0134076_105051371
56Ga0164308_116908751
57Ga0164305_108252491
58Ga0164305_109425282
59Ga0120150_10198871
60Ga0120150_11038871
61Ga0157374_107826281
62Ga0120158_104951181
63Ga0120125_10704401
64Ga0120149_10896232
65Ga0120171_10692542
66Ga0173483_101307352
67Ga0137409_103635802
68Ga0184605_104267341
69Ga0184619_101046852
70Ga0184619_104681002
71Ga0184618_101559761
72Ga0066655_101281161
73Ga0184643_13221041
74Ga0184643_14195991
75Ga0193720_10561711
76Ga0193700_10594292
77Ga0193731_10819462
78Ga0193735_11694952
79Ga0210382_101300491
80Ga0193719_100380991
81Ga0193719_103694041
82Ga0193695_10667171
83Ga0222621_10233681
84Ga0207686_113168981
85Ga0207704_101915691
86Ga0209157_12895211
87Ga0209180_101521832
88Ga0307313_100310272
89Ga0307313_101484331
90Ga0307301_101933192
91Ga0307317_100567691
92Ga0307317_101645731
93Ga0307297_103154751
94Ga0307288_100279581
95Ga0307288_103208982
96Ga0307290_100427441
97Ga0307299_100598031
98Ga0307287_102388102
99Ga0307281_104243881
100Ga0307305_100506601
101Ga0307292_102411732
102Ga0307296_100887371
103Ga0307310_100427793
104Ga0307310_103654241
105Ga0307312_100718861
106Ga0307312_101735971
107Ga0307312_101982021
108Ga0307312_106654211
109Ga0307300_100250841
110Ga0307308_100404583
111Ga0307308_102927101
112Ga0307304_103913961
113Ga0307496_100340211
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 15.86%    β-sheet: 20.00%    Coil/Unstructured: 64.14%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100110MGRRGLPVSVAALAVCAALGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains




 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
99.1%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Groundwater Sediment
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Grasslands Soil
Surface Soil
Soil
Permafrost
Soil
Grasslands Soil
Grass Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
3.5%38.1%17.7%3.5%12.4%4.4%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N57_053666002170459013Grass SoilEIILRMGRRGLPVYVAALAVCAGLGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGSGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYXGQIDDLARMPEIVRRAIPWLRIESEAHLCVRHEQWAARRRCCSR
AL20A1W_115362523300000880PermafrostGCGIILRMGRRGLPVSLAVLAVCTGLGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYAGQIEDLARIPTIIRRAXXXXXXXXAWAARRLCCSPHATRSSSPARPRSTR*
AL20A1W_139421623300000880PermafrostMGRRGLPVSFAVFAACAALGLLGPSAGKASWDLVQVKVVTIHYRTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPLLGPLAVVNPEGQGRKFRRFSWGYAGQIDDLARMPQL
A21PFW6_100277513300001333PermafrostMGRRGLPVSFAVFAACAALGLLGPSAGKASWDLVQVKVVTIHYRTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPLL
A3PFW1_1008974413300001535PermafrostALGLLGPSAGKASWDLVQVKVVTIHYRTHDGYPRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPMLGPFAVVNPEGQGRKFRRFSWGYADSGNATI*
A1565W1_1089594513300001536PermafrostMGRRGLPVFVAALVACALLGLLGPSAGTASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYAGQIEDLARIPTIIRRAIPWLRIEPK
A10PFW1_1223264813300001538PermafrostQEPRRHGDGEAEVPQPRGCRRRSGTSLGISLSGQAAVPGGCGIILRMGRRGLPVCVAMLAVCAGLGLLGPSAGSASWDQVLVKVVTIHYKTHDGHRRAAYVVLPDWYSPGNNPTLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYAGQIEDLARMPTIIRRAIPWLRIEPK
Ga0062589_10171584813300004156SoilMGRRGLPVYVAALAVCAGLGLLGPSAGSASWEQVLVKVVTLHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKN
Ga0066678_1006213013300005181SoilMGRRGLPVTLAALAVSGALGVLGPSSANASWDQVHVRVVTFHYATHGGHRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPSVGPFAVVNPEGQGRRFGQFSWGYPGQIADLARMPQLVSRNIPWLRIEPRRVYAFGTSMGGQET
Ga0066676_1025305423300005186SoilMGRRGLPVSLIAFVACAALGLLGPSAGRASWDQIQVKVVTIHYKTHDGYRRAAFVVLPNWYGPGDNPPLPLIISPHGRGVSAEENVDRWGS
Ga0070690_10109389113300005330Switchgrass RhizosphereMGRRGLPVSLAVLAVCAGLVLLGPTGGRASWDQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPNVGRLRSSILRDKAAGSDASPGA
Ga0070670_10206821513300005331Switchgrass RhizosphereMGRRGLPVSLAVLAVCAGLVLLGPAGGRASWDQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPNVGPFAVVNPEGQGRRFRRFSW
Ga0070666_1064216913300005335Switchgrass RhizosphereMGRRGLPVSLAVLAVCAGLVLLGPTGGRASWGQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPN
Ga0070687_10103662413300005343Switchgrass RhizosphereMGRRGLPVSLAVLAVCAGLVLLGPTGGRASWDQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPNDGPFAVVNPEGQGRRFRRFSWGYPGQIEDLARMPEIVRRAIPWLRLAPKRIYAFGTSMGGQE
Ga0070678_10130298223300005456Miscanthus RhizosphereMGRRGLPVSLAVLAVCAGLVLLGPTGGRASWDQVEVKVVTIHYKTQDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEVNVDRWGNLPNDGPFAVVNPEGQGRRFRRFSWG
Ga0070699_10122672213300005518Corn, Switchgrass And Miscanthus RhizosphereMGRRGLPVYVAALAICAGLGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRFRRYSWGYAGQIDDLARMPEIVRRAIPWLRIEPKRIYAFGTSMGGQE
Ga0070699_10194759623300005518Corn, Switchgrass And Miscanthus RhizosphereMIPRMGRRGLPVPLAALLVSALLGVLGSSSANAAWDQVQVRVVTFHYQTHDGHRRAAYVVLPGWYGPANNPPLPLIISPHGRGVSAAANVDRWGNLPLLG
Ga0073909_1019980823300005526Surface SoilMGRRGLPVSLAVLAVCAGLVLLGPTGGRASWSQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPRLGSFAVVNPEGQG
Ga0070684_10226444823300005535Corn RhizosphereMGRRGLPVSLAVLAVCAGLVLLGPTGGRASWDQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAE
Ga0070693_10154210513300005547Corn, Switchgrass And Miscanthus RhizosphereMGRRGLPVCLAALAVCAGLGLLGPSAGSASWDQVLVKVLTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVN
Ga0066699_1018099913300005561SoilMTRRSLIFLLVLSAAIGLFGAGAARASWERVQVQVITIHYTTHDGFRRDAYVVLPEWYGPWSNPPLPLIISPHGRGVSAEENVDRWGDLPALGSFAVVNPEGQGRRLENFSW
Ga0066703_1016465113300005568SoilMGRRGLPVTLAVLAVAAVLGVLGPSSANAFWDQVHVRVVTFHYATHDGHRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVD
Ga0074050_1146579913300006577SoilRPLHGPLPCPTMLARSTLAALAVSAALGVLGPSAANASWDLVQVKVVTFHYTTHDGHRRAAFVVLPDGYGPDNNPPLPLIISPHGRGVSAAENVDRWGNLPNLGPFAVVNPEGQGRKFEHFSWGYPGQIADLARMPQLVRRAIPWLQIEPGRTYAFGTSMGGQETLLLVARHPKLLAG
Ga0105247_1083848613300009101Switchgrass RhizosphereVLAVCAGLVLLGPTGGRASWDQVEVKVVTIHYKIHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPNDGPFAVVNPEGQGRRFRRFSWGYPGQIEDLARMPEI
Ga0066709_10210302823300009137Grasslands SoilMGRRGLPVTLAVLAVAAVLGVVGPSSANAFWDQVHVRVVTFHYATHDGHRRAAYVVLPDWYRPGVNPPVPLVISPHGRGVSAEENVDRWGNLPNLGPFVVVNPEGQGRRFGQFSWGYPGQIADLARMPQLVSR
Ga0134088_1031069313300010304Grasslands SoilMGRRGLPVSLIAFVACAALGLLGPSAGRASWDQIQVKVVTIHYKTHDGYRRAAYVVLPNWYGPGDNPPLPLIISPHGRGVSAEENVDRWGSIPLLGPFAVVNPEGQGRRLRGFSWGYAGQIEDLARMPQIVRRAIPWLR
Ga0120167_108234113300012001PermafrostMGRRGLPVFVAALVACALLGLLGPSAGTASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYAGQIEDLARIPTIIRRAIPWLRIEPKRIY
Ga0120152_102093433300012011PermafrostMGRRGLPVSFAVFAACVALGLLGPSAGKASWDLVQVKVVTIHYRTHDGYPRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPMLGPFAVVNPEGQGRKFRRFSWGYADSGNATI*
Ga0137389_1086625823300012096Vadose Zone SoilMGRRGLPVALAILAVSVALGALGPSAASASWDRVQVRVVTFHYKTHDGDHRAAYVVLPDWYGPGANPPVPLIISPHGRGVSAEENVDRWGNLPKLGPFAVVNP
Ga0137388_1202671213300012189Vadose Zone SoilMGRRGLPVTLTTLAVAAVLGVLGPSSANASWDQVHVRVVTFHYVTHDGHRRAAHVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPSLGPFAVVNPEGQGRRFEQFSWGYPGQIADLARMPQLVRRNIPWLQIERGRIYAFG
Ga0137365_1100431523300012201Vadose Zone SoilMGRRGLPVSLIAFVACAALGLLGPSAGRASWDQIQVKVVTIHYKTHDGYRRAAYVVLPNWYGPGDNPPLPLIISPHGRGVSAEENVDRWGNIPLLGPFAVVNPEGQGRRLRRFSWGYAGQ
Ga0137376_1025837223300012208Vadose Zone SoilMGRRGLPVTLAALAVSGALGVLGPSSANASWDQVHVRVVTFHYATHGGHRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPSVGPFAVVNPEGQGRRFGQFSWGYPGQIADLARMPQ
Ga0137378_1053303623300012210Vadose Zone SoilMGRRGLPVVLAALTVCAALWALGPTSAKASWDQVQVKVVTFHYRTHAGHRRAALVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNL
Ga0137378_1109333313300012210Vadose Zone SoilMGRRGLPVTLAALLVSALLGVLGSSSANAAWDQVQVRVVTFHYQTHDGHRRAAYVVLPDWYGPANNPPLPLIISPHGRGVSAEENVDRWGNLPSVGPFAVVNPEGQGRRFEDFSWGYPGQITDLARMPQLVHRNIPWLRIEPRR
Ga0137377_1019008433300012211Vadose Zone SoilVFAACAALGLLGPSAGRASWDQVQVKVVTIHYKTHDGYRRAAYVVLPDWYGPGDNPTLPLIISPHGRGVSAEENVD
Ga0137377_1028277213300012211Vadose Zone SoilMGRRGLPAALAILGVSVALGALGPSAASASWDQAQVRVVTFHYKTRDGHRRAAYVVLPDWYRPGVNPPVPLVISPHGRGVSAEENVDRWGNLPNLGPFA
Ga0137377_1076843313300012211Vadose Zone SoilMGRRGLPITLAALAVSAVLGTFGPSAASASWDQVRVKVVTFDYKTHDGHRRAAYVVLPDWYGPSNNPPLPLVISPHGRGVSAEENVDRWGNLPTLGPFAVVNPQGQGRRFQRFSWGY
Ga0137377_1108721623300012211Vadose Zone SoilMGRRGLPVVLAALTVCAALWALGPTSAKASWDQVQVKVVTFHYRTHAGHRRAALVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPEGQGRRFERFSWGYS
Ga0137370_1051920113300012285Vadose Zone SoilMGRRGLPVTLAALAVSGALGVLGPSSANASWDQVHVRVVTFHYATHGGHRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPSVGPFAVVNPEGQGRRFGQFSWGYPGQIADLARMPQLVSRNIPWLRIEPRRVYAFGTSMGGQE
Ga0137387_1026366813300012349Vadose Zone SoilMGRRGLPVSLIAFFACAALGLLGPSAGRASWDQIQVKVVTIHYKTHDGYRRAAYVVLPNWYGPGDNPPLPLIISPHGRGVSAEENVDRWGNIPLLGPFAVVNPEGQGRRLRRFSWGYAGQIEDLARMPQIVRRAIPWLRIEPKGIYAFGTSMGG
Ga0137386_1064620323300012351Vadose Zone SoilMGRRGLPVSLIAFVACAALGLLGPSASRASWDQIQVKVVTIHYKTHDGYRRAAYVVLPNWYGPGDNPPLPFIISPHGRGVSAEENVDRWGNIPLLGPLAVVNPEGQGRRLRRFSWGYAGQIEDLARMPQIVRHAIPWLRIEPKGIYAFGTSMGGQ
Ga0137371_1036347713300012356Vadose Zone SoilMGRRGLPVSLIAFVACAALGLLGPSAGRASWDQIQVKVVTIHYKTHDGYRRAAYVVLPNWYGPGDNPPLPFIISPHGRGVSAEENVDRWG
Ga0137397_1049245913300012685Vadose Zone SoilMGRRGLPVTLAVLAVAAVLGVLGPSSANASWDQVHVRVVTFHYATHDGHRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPSVGPFAVVNPEGQGRRFGQFSW
Ga0157283_1006133313300012907SoilMGRRGLPVYVAALAVCAGLGLLGPSAGSASWDQVLVKVVTIHYKTHNGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRG
Ga0157308_1008810313300012910SoilMGRRGLPVYVAALAVCAGLGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPGWYGPSNNPPLPLIISPHGRGVSAEKNVDRWGNLPTVGQFAVANPEGQGRR
Ga0137394_1129968013300012922Vadose Zone SoilMGRRGLPVTLAVLGVAAVLGVLGPSSANAFWDQVHVRVVTFHYATHDGHRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWANLPSVGPFAVVNPEGQGRRFGQFSWGYPGQIADLARMPQLVSRNIPWLRIEPRRVYAFGTSMGG
Ga0137416_1089782223300012927Vadose Zone SoilMGRRGLPVILAVLAVAAVLGVLGPSSANAFWDQVHVRVVTFHYATHDGHRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENIDRWGNLPSLGPFAVVNPEGQGRRLEQFSWGYPGQ
Ga0137407_1202803923300012930Vadose Zone SoilMGRRGLPVTLAALLVSALLGVLGSSSANAAWDQVQVRVVTFHYQTHDGHRRAAYVVLPDWYGPANNPPLPLIISPHGRGVSAEENVDRWGNLPTVGPFAVVNPEGQG
Ga0164300_1034144423300012951SoilMGRRGLPVSLAALAACAGLVLLGPSGGRASWNQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPLLPLIISPHGRGVSAEENVDRWGNLPQLGPFAVVNPEGQGRRFRRFSWGYAGQIDDLARMPEIVRRAIPWLRLAPKRVYAFGTSMGG
Ga0164301_1008731513300012960SoilVLTACAGLVLLGPSGGRASWNQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLP
Ga0164301_1080491613300012960SoilMGRRGLPVCVAALAVCAGLGLLGPSAGSASWDQILVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVERWGNLPTLGPFAVVNPEGQGRRFRRYSWGYAGQIDDLARMPEIV
Ga0164302_1083578113300012961SoilMGRRGLPVCVAALAVCAGLGLLGPSPGSASWDQVLVKVVTVHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAERNVDRWGNLPTLGPFAVVNPEGQG
Ga0134077_1036039423300012972Grasslands SoilMGRRGLPVSLIAFVACAALGLLGPSAGRASWDQIQVKVVTIHYKTHDGYRRAAYVVLPNWYGPGDNPPLPLIISPHGRGVSAEENVDRWGSIPLLGPFAVVNPEGQGR
Ga0134110_1061348213300012975Grasslands SoilMGRRGLPVTLAALICAAVWAWAPASSRASWDQVHVKVVTFHYRTHDGHRRAAFVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPSMGPFAVVNPEGQGRRFGQFSWGYPGQIADLARMPQLVSRNI
Ga0134076_1050513713300012976Grasslands SoilMGRRGLPVTIAALAVSAVLGALGPSAARASWDQVRVKVVTFHYKTHDGHRRAAYVVLPDWYGPGNNPPLPLVISPHGRGVSAEENVDRWGNLPTMGPFAVVNPQGQGRRFQRF
Ga0164308_1169087513300012985SoilMGRRGLPVYVAALAVCAGLGLLGPSAGSASWDQVLVKVVTVHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVERWGNLPTLGPFAVVNPEGQ
Ga0164305_1082524913300012989SoilMLGMGRRGLPVSLAVLAACAALGLLGPAAGKAGWNLVQVKVVTIHYTTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAAANVDRWGNLPLLGSFAVVNPEGQGRRFR
Ga0164305_1094252823300012989SoilMGRRGLPVSLAALAACAGLVLLGPSGGRASWNQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPKLGPFAVVNPEGQGRRFRRLSWGYP
Ga0120150_101988713300013294PermafrostMGRRGLPVSFAVFAACAALGLLGPSAGKASWDLVQVKVVTIHYRTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPMLGPFAVVNPEGQGRKFRRFSWGY
Ga0120150_110388713300013294PermafrostVFAACTALGLLGPSAGRASWNQVQVKVVTIHYRTHDGYRRAAYVVLPDWYGPADNPPLPLIISPHGRGVSAEENVDRWGNLPLLGPFAVVNPEGQGRKFRRFSWGYAGQIDDLARMPQLVRRAIPWLRIEQKGIYAFGTSMGGQET
Ga0157374_1078262813300013296Miscanthus RhizosphereVLAVCAGLVLLGPTGGRASWDQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVD
Ga0120158_1049511813300013772PermafrostVFAACTALGLLGPSAGRASWNQVQVKVVTIHYKTHDGYRRAAYVVLPDWYGPADNPPLPLIISPHGRGVSA
Ga0120125_107044013300014056PermafrostVTLDDELALKVELLGPSAGKASWDLVQVKVVTIHYRTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPLLGPFAVVNPEGQGRKFKRFSWGYPG
Ga0120149_108962323300014058PermafrostMLAVCAGLGLLGPSAGSASWDQVLVKVVTIHYKTHDGHRRAAYVVLPDWYSPGNNPTLPLIISPHGRGVSAEENVDRWGNLPTLGPFA
Ga0120171_106925423300014827PermafrostMGRRGLPVSFAVFAACVALGLLGPSAGKASWDLVQVKVVTIHYKTHDGHRRAAYVVLPDWYSLGNNPPLPLIISPHGRGVGARANIRRWGDLPARGGFAVINPEGQGRKLTLFSWGDPGE
Ga0173483_1013073523300015077SoilMGRRGLPVYVAALAVCAGLGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAE
Ga0137409_1036358023300015245Vadose Zone SoilMGRRGLPVTLAVLAVAAVLGVLAPSSANAFWDQVHVRVVTFHYATHDGHRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWANLPSVGPFAVVNPEGQ
Ga0184605_1042673413300018027Groundwater SedimentMGRRGLTVTLAALAASAVLGAFGPSAASASWDQVRVKVVTFHYKTHDGHRRAAYVVLPDWYRPGNNPPLPLVISPHGRGVSAEENVDRWGNL
Ga0184619_1010468523300018061Groundwater SedimentMGRRGLPVSLIVFAACAAGGLLGPSAGKASWDLVQVKVVTIHYKTHDGHRRAAYVVLPDWYGPGDNPPLPLIISPHGRGVSAEENVDRWGN
Ga0184619_1046810023300018061Groundwater SedimentMGRRGLPGSVAVLAVCAGIGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPNWYGPGNNPPLPLIISPH
Ga0184618_1015597613300018071Groundwater SedimentMGRRGLPVFVAALAACAGLGLLGPSAGSASWNQVLVKEVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYAGQIEDLARMPTIVRRAIPWLRIEPKRIYAFGTSMGGQETL
Ga0066655_1012811613300018431Grasslands SoilMGRRGLPVTLAALAVAAVLGVGASAADASWNQVQVKVVTFHYKTHDGHRRAAYVVLPDWYGPGTNPPVPLIISPHGRGVSGEENVDRWGNLPNLGPFAVVNPEGQGRR
Ga0184643_132210413300019255Groundwater SedimentMGRRGLPVTIAALAVSAVLGALGPSAASASWEQVRVKVVTFHYKTHDGHRRAAYVVLPDWYGPGNNPPLPLVISPHGRGVSAEENVDRWGNLPTLGPFAVVNPQGQGRRFQRFSWGYPGQIEDLARMPQLVRRALPW
Ga0184643_141959913300019255Groundwater SedimentMGRRGLPVFVAVLAVCAGLGLLGPSAGNASWDRVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPDNNPPLPLIISPHGRGVSAEENVARWGNLPTLGPFAVVNPEGQGRRFRR
Ga0193720_105617113300019868SoilMGRRGLPVYLAALAVCAGLGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWG
Ga0193700_105942923300019873SoilMGRRGLPVYLAALAVCAGLGLLGPSAGNASWDQVLVKVVTIHYRTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYAGQIEDLARMP
Ga0193731_108194623300020001SoilMGRRGLTVTLAALAASAVLGAFGPSAASASWDQVRVKVVTFHYKTHDGHRRAAYVVLPDWYRPGNNPPLPLVISPHGRGVSAEENVDRWGNLPTL
Ga0193735_116949523300020006SoilMGRRGLPVTLAALAVSAVLGALGPSAASASWDQVRVKVVTFHYKTHDGHRRAAYVVLPDWYGPDNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPQGQ
Ga0210382_1013004913300021080Groundwater SedimentMGRRGLAVTLAALAVSAALGVLGPSAANASWDLVQVRVVTFHYTTHDGHRRAAFVVLPDWYGPDNNPPLPLIIS
Ga0193719_1003809913300021344SoilMGRRGLPVTLAALAVSAVLGALGPSAASASWDQVRVKVVTFHYKTHDGHRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPQGQGRRFQRFSWGYPGQ
Ga0193719_1036940413300021344SoilMGRRGLPGSVAVLAVCAGMGLLGPSSGSASWDQVLVKVVTIHYKTHDGYRRAAYVVVPDWYGAGNNPPLPLIISPHGRGV
Ga0193695_106671713300021418SoilMGRRGLAVTLAALAVSAVFGTVGPSAASASWDQVRVKVVTFHYKTHDGHRRAAYVVLPDWYGPGNNPPLPLVISPHGRGVSAEENVD
Ga0222621_102336813300021510Groundwater SedimentMGRRGLAVTLAALAVSAALGVLGPSAANASWDLVQVRVVTFHYTTHDGHRRAAFVVLPDWYGPDNNPPLPLIISPHGRGVSAEENVDRWGNLPNLGPFAVVNPEGQGRRFEHFSWGYPGQIADLARMLQL
Ga0207686_1131689813300025934Miscanthus RhizosphereMGRRGLPVSLAVLAVCAGLVLLGPTGGRASWDQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPNVGP
Ga0207704_1019156913300025938Miscanthus RhizosphereMGRRGLPVSLAVLAVCAGLVLLGPTGGRASWDQVEVKVVTIHYKTHDGYRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPNVGPFAVVNPEGQGRRFRRFSWGYPGQIEDLARMPEIVRRAIPWLRLAPKRIYAFGTSMGGQ
Ga0209157_128952113300026537SoilMGRRGLPVTLAALAVAAVLGVGASAADASWNQVQVKVVTFHYKTHDGHRRAAYVVLPDWYGPGNNPPLPLVISPHGRGVSAEENVDRWGNLPTLGPFAVVN
Ga0209180_1015218323300027846Vadose Zone SoilMGRRGLPVALAILAVSVALGALGPSAASASWDRVQVRVVTFHYKTHDGDHRAAYVVLPDWYGPGANPPVPLIISPHGRGVSAEENVDRWGNLPKLGPFAVVNPEGQGRRFEHFSWGYPGQIADLARMPQLVRRAIPWLHIEPGRIYAFGTSM
Ga0307313_1003102723300028715SoilMGRRGLPVYLAALAVCAGLGLLGPSAGNASWDQVLVKVVTIHYRTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDR
Ga0307313_1014843313300028715SoilMGRRGLPVTLAALAVSAVLGALGPSAASASWDQVRVKVVTFHYKTHDGHRRAAYVVLPAWYGPDNNPPLPLIISPHGRGVSAEENVDRW
Ga0307301_1019331923300028719SoilMGRRGLPVYVAALAVCAALGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVVPDWYGAGDNPPLPLIISPHGRGVSAEQNVARWGNLPTLGSFAVVNPEGQGRRFRRFSWGYAGQIEDLARMPQIIRRAIPWLRIEPKRIYAFGTSMGGQE
Ga0307317_1005676913300028720SoilMGRRGLPVFVAVLAVCAGLGLLGPSAGNASWDRVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGY
Ga0307317_1016457313300028720SoilMGRRGLPVYVAALAVCAALGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSA
Ga0307297_1031547513300028754SoilMGRRGLPVYVVALAVCAGLGLLGPSAGTASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYAGQIEDLARMPQIVRRAIPWLRIEPKRVYAFGTSMGGQE
Ga0307288_1002795813300028778SoilMGRRGLPVYLAALAVCAGLGLLGPSAGNASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRR
Ga0307288_1032089823300028778SoilMGRRGLAVTLAALAVSAALGVLGPSAANASWDLVQVRVVTFHYTTHDGHRRAAFVVLPDWYGPDNNPPLPLIISPHGRGVSAEENVDRWGNLPNLGPFAVVNPEGQGRRFEHFSWGYPGQIADLARMPQLVRRAIPWLQIEPGRTYAF
Ga0307290_1004274413300028791SoilMGRRGLPVTLAALAVSAVLGALGPSAASASWDQVRVKVVTFHYKTHDGHRRAAYVVLPDWYGPDNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPQGQGRRFQRFSWGYPGQIEDLARM
Ga0307299_1005980313300028793SoilMGRRGLPVTLAALAVSAVLGGLGPSAASASWDQVRVKVVTFHYKTHDGHRRAAYVVLPDWYGPDNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPQGQGRRFQRFSW
Ga0307287_1023881023300028796SoilMGRRGLPGSVAVLAVCAGIGLLGPSSGSASWDQVLVKVVTIHYKTHDGYRRAAYVVVPDWYGAGNNPPLPLIISPHGRGVSAEQN
Ga0307281_1042438813300028803SoilQPKIFSPTRTAVPGGCGIIQRMGRRGLPVSLAVLAVCGGLVLLGPSAGSATWDQVHVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYPGQIADLARMPEIVRRAIPWLRLAPKRIYSF
Ga0307305_1005066013300028807SoilMGRRGLPISVAVLAVCAGIGLLGPSAGSASWDQVLVKVVTIHYKTHDGHRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAKQNVARWGNLPTLGPFAVVNPEGQGRRFRRFSWGYAGQIDDLARMPQIIRRAIPWLRIEPKRIYAFGTSMGG
Ga0307292_1024117323300028811SoilMGRRGLPVYLAALAVCAGLGLLGPSAGNASWDQVLVKVVTIHYRTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRFRRF
Ga0307296_1008873713300028819SoilMGRRGLPGSVAVLAVCAGIGLLGPSSGSASWDQVLVKVVTIHYKTHDGYRRAAYVVVPDWYGAGNNPPLPLIISPHGRGVSAEQNVARWGNLPTLGSFAVVNPEGQGRRFRRFSWGYAGQIEDLARMPQITRRAIPWLR
Ga0307310_1004277933300028824SoilMGRRGLPVYLAALAVCGGLGLLGPSAGNASWDQVLVKVVTIHYRTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEK
Ga0307310_1036542413300028824SoilMGRRGLPVTIAALAVSAVLGALGPSAASASWEQVRVKVVTFHYKTHDGHRRAAYVVLPDWYGPGNNPPLPLVISPHGRGVSAEENVDRWGNLPTLGPFAVVNPQGQGRRFQRFSWGYPGQIEDLARMPQLVRRALPWLQIAPHRVYAFGTSMGGQETLLLVARHP
Ga0307312_1007188613300028828SoilMGRRGLPVYVAALAVCAGLGLLGPSAGRASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPSNNPLLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRF
Ga0307312_1017359713300028828SoilMGRRGLPISVAVLAVCAGIGLLGPSAGSASWDQVLVKVVTIHYKTHDGHRRAAYVVVPDWYGPGNNPPLPLIISPHGRGVSAKQNVARWGNLPTLGPFAVVNPEGQGRRFRRFSWGYAGQIEDLARMPQIIRRAIPWLRIEPKRIYA
Ga0307312_1019820213300028828SoilMGRRGLPVTLAALAVSAVLGALGPSAASASWDQVRVKVVTFHYKTHDGHRRAAYVVLPDWYRPGNNPPLPLIISPHGRGVSAEENVDRWGNLPTLGPFAVVNPQGQGRRFQRFSWGYPGQIEDLARMPQLDRRALP
Ga0307312_1066542113300028828SoilMGRRGLPVSVAALAVCAALGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGY
Ga0307300_1002508413300028880SoilMGRRGLAVTLAALAVSAALGVLGPSAANASWDLVQVRVVTFHYTTHDGHRRAAFVVLPDWYGPDNNPPLPLIISPHGRGVSAEENVDRWGNLPNLGPFAVVNPEGQGRRFEHFSWGYPGQIADLARMPQLVRRAIPWLQIEPGRTYAFGTSMGGQETLLLVARHPKLL
Ga0307308_1004045833300028884SoilMGRRGLPVYLAALAVCAGLGLLGPSAGNASWDQVLVKVVTIQYRTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQ
Ga0307308_1029271013300028884SoilMGRRGLPVYVAALAVCAGLGLLGPSAGRASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPSNNPLLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRFRRFSWGYAGQIEDLARMPQIVRRAIPWLRIEPKRI
Ga0307304_1039139613300028885SoilMGRRGLPVYVAALAVCAGLGLLGPSAGRASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPSNNPLLPLIISPHGRGVSAEKNVDRWGNLPTLGPFAVVNPEGQGRRFRRFSLGYAGQ
Ga0307496_1003402113300031200SoilMGRRGLPVYIAALVVCAGLGLLGPSAGSASWDQVLVKVVTIHYKTHDGYRRAAYVVLPDWYGPGNNPPLPLIISPHGRGVSAEKNVDRWGNLPTLGAFAVVNPEGQG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.