Basic Information | |
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Family ID | F082650 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 113 |
Average Sequence Length | 49 residues |
Representative Sequence | MSAVASIERDLRAAVSAEVVAPTAAYLTDMTEARGLSGRADAVALPR |
Number of Associated Samples | 104 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 61.06 % |
% of genes near scaffold ends (potentially truncated) | 99.12 % |
% of genes from short scaffolds (< 2000 bps) | 85.84 % |
Associated GOLD sequencing projects | 102 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.48 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (80.531 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.124 % of family members) |
Environment Ontology (ENVO) | Unclassified (30.973 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (51.327 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 45.33% β-sheet: 0.00% Coil/Unstructured: 54.67% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.48 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Serpentine Soil Grasslands Soil Surface Soil Switchgrass Rhizosphere Soil Agricultural Soil Permafrost Soil Grasslands Soil Hardwood Forest Soil Soil Tropical Peatland Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Groundwater Sand Soil Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Agave |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
C688J18823_105075932 | 3300001686 | Soil | VSAVASVERDLRAAVSADVVAPTSAYLTDMTEARGL |
Ga0063454_1020667682 | 3300004081 | Soil | MTAVASVRRELRAAVAAEIAAPTASYLSDETEARGLRGRA |
Ga0062589_1025235791 | 3300004156 | Soil | MSAVTSIERDLRAAVSAEVLAPTTAYLTDMTEARGLHGRADAVALPRTAEQVAEV |
Ga0066672_100517444 | 3300005167 | Soil | MMSTVASIEHDLRAAVAAEIVTPTAHYLADETEGRGVRGRADAVALPRTAAETREVV |
Ga0066678_107707672 | 3300005181 | Soil | MSTVASIERELRAAVAADVVAPTAQYLADETEGRGIRGRADAIALPKTAEEVA |
Ga0065705_103237961 | 3300005294 | Switchgrass Rhizosphere | VTALASVERDLRAAVTADVVAPTAAYLTDMTEARGLHGRADAVALPRTAEEVA |
Ga0070669_1000579831 | 3300005353 | Switchgrass Rhizosphere | MSALASIERDLRAAVAAEVIAPSAAYLTDQTEARGLGGRADAVALPRSAEEVAEVVSWCYAHGV |
Ga0070695_1005794052 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | VSAIAAVERDLRAAVSAEVIAPTAAYLTDMTEARGLKGRADAVALPRTADQA |
Ga0066707_105838642 | 3300005556 | Soil | MSAIASIERELRAAVAADVVAPTAEYLADETEGRGIRGRA |
Ga0066700_100738671 | 3300005559 | Soil | VSAVASIERELRAAVAADIVAPTAQYLADETEGRGIRGRADAIALPKTAEEVAEVVTWC |
Ga0058697_106378572 | 3300005562 | Agave | MSAVASIERDLRAAVAADVVPPTVGYLTDQTEARGLTGR |
Ga0068855_1014086452 | 3300005563 | Corn Rhizosphere | MSAVTSIERDLRAAVSAEVLAPTTAYLTDMTEARGLHGRADAVALPRTAE |
Ga0066693_102352881 | 3300005566 | Soil | VSAVASVERELREAVSADVVAPTAQYLADETEARGVRGRADAVALPRSAQEAA |
Ga0066705_101986431 | 3300005569 | Soil | MSVVASVERALRDAVSAEVVAPSAHYLTDETETRGLHG |
Ga0066694_101046701 | 3300005574 | Soil | VSAVASVKRELREAVSADVVAPTAQYLADETEARGVRGRADAVALPRS |
Ga0066691_109375862 | 3300005586 | Soil | MTAVTSVERDLRAAVTADVVAPSAAYLTDMTEARGL |
Ga0070702_1000079601 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | MSALASIERDLRAAVAAEVIAPSAAYLTDQTEARGLGGRADAV |
Ga0070702_1002563943 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | VSAVASIERELGRAVAADVVAPTAAYLTDMTEARGLIGRADAVALPR |
Ga0068859_1012690832 | 3300005617 | Switchgrass Rhizosphere | MSALASIERDLRAAVAAEVIAPSAAYLTDQTEARGLGGR |
Ga0068851_101492901 | 3300005834 | Corn Rhizosphere | MSALASIERDLRAAVAAEVIAPSAAYLTDQTEARGLGGRADAVALP |
Ga0066651_103935492 | 3300006031 | Soil | MSAVAAVERDLRAAVGADIVSPSAPYLTDQTEARGLSGHADAVALP |
Ga0074054_111786601 | 3300006579 | Soil | MSALASVERDLRAAVAAEVVAPSAAYLTDQTEARGLSGRADA |
Ga0079220_103754302 | 3300006806 | Agricultural Soil | MSAVTSIERDLRAAVSAEVLAPTTAYLTDMTEARGLHGRADAVALPRTAEEVAEVVTWCY |
Ga0075428_1014631432 | 3300006844 | Populus Rhizosphere | VTALASVERDLRAAVTADVLAPTSAYLTDMTEARGLHGRADAVALPRSA |
Ga0075431_1002749361 | 3300006847 | Populus Rhizosphere | VTALASVERDLRAAVTADVLAPTSAYLTDMTEARGLHGRADAVAL |
Ga0068865_1020327672 | 3300006881 | Miscanthus Rhizosphere | VSAVASIERELGRAVAADVVAPTAAYLTDMTEARGLIGRADAVALPRTAEEI |
Ga0066710_1020719742 | 3300009012 | Grasslands Soil | MSAVAFVERELRASVAAEIVAPAAPYLTDETEARGFRGRADAVALPRTAEEVA |
Ga0099830_112846511 | 3300009088 | Vadose Zone Soil | VSSVAALERELRAAVTADVVAPTAAYLTDMTEARGLSGRA |
Ga0105245_101678001 | 3300009098 | Miscanthus Rhizosphere | MSALASIERDLRAAVTAEVIAPSAAYLTDQTEARGLGGRADAVALPRSAEEVAEVVS |
Ga0066709_1017902052 | 3300009137 | Grasslands Soil | MSAVATVERELRAAVAAEIVEPTAAYLTDQTEARGLRGRADAVALPRTAEE |
Ga0066709_1027109171 | 3300009137 | Grasslands Soil | MSTATTVERELRASVAAEIAAPTSAYLHDETEARGLLGRADAVALPRTAEE |
Ga0114129_100381251 | 3300009147 | Populus Rhizosphere | VSAIAAVERDLRAAVSAEVIAPTAAYLTDMTEARGLKGRADAVALPRTADQAAEVV |
Ga0105237_102931031 | 3300009545 | Corn Rhizosphere | MSALASIERDLRAAVTAEVIAPSAAYLTDQTEARGLGGRADAVALPRSAEEV |
Ga0105056_10719282 | 3300009801 | Groundwater Sand | MSAVASVERELRTAVAAEIIAPSAAYLTDQTEARGLRGRADAVALPHTA |
Ga0126304_107333761 | 3300010037 | Serpentine Soil | MTAVASTERELRRAVSADIVAPTAAYLTDQTEARGLQGRADAVALPRTAEQVAEVGEVLA |
Ga0126309_106992222 | 3300010039 | Serpentine Soil | MSAVAAVERDLRAAVRADIVSPSAAYLTDMTEARGLSGHADAVAL |
Ga0134128_101911673 | 3300010373 | Terrestrial Soil | MSAVTTIERDLRAAVSAEVLAPTTAYLTDMTDARGLHGRADAVAL |
Ga0105239_121548401 | 3300010375 | Corn Rhizosphere | MSAVTSIERDLRAAVSAEVLAPTTAYLTDMTEARGLHGRADAVALPRTAEQVAEVVTWCYSRGIA |
Ga0105239_128346301 | 3300010375 | Corn Rhizosphere | VSAVASIERELGRAVAADVVAPTAAYLTDMTEARGLIGRADAVALPRTAEEIAEVV |
Ga0134124_127571372 | 3300010397 | Terrestrial Soil | MSALASIERDLRAAVAAEVIAPSAAYLTDQTEARGLGGRADAVALPRSAE |
Ga0134123_106551523 | 3300010403 | Terrestrial Soil | MTAVASVERDLRAAVSAEIAAPSSAYLTDQTEARGIAGRADAVALPRSAEE |
Ga0138514_1000216463 | 3300011003 | Soil | MTAVASVERGLRAAVAADVVAPTAAYLTDMTEARGLIGRADAVALPRTAE |
Ga0151489_15160682 | 3300011106 | Soil | MSALASIERDLRAAVAAEVVAPSAAYLTDQTEARGLSGRADAVALPRNAEEVAEVVSW |
Ga0151490_16409182 | 3300011107 | Soil | MSALASIERDLRAAVAAEVVAPSAAYLTDQTEARGLGGRADAVALPRNAEEVAEIVSWCYAHGVP |
Ga0105246_101517071 | 3300011119 | Miscanthus Rhizosphere | MSALASIERDLRAAVAAEVIAPSAAYLTDQTEARGLG |
Ga0120153_10223231 | 3300011991 | Permafrost | MSAVASVEHELRAAVTADVIAPTAAYLTDMTEARGLSGRG |
Ga0137364_114231431 | 3300012198 | Vadose Zone Soil | MSAVASVERELRAAVAAEIVQPTAAYLTDQTEARGLRGRADAVALPRSAEEVAEVVS |
Ga0137399_115727491 | 3300012203 | Vadose Zone Soil | MSALASVERELRAAVAAEVVAPTAAYLTDMTEARGLSGRADAVALPRTAEEVVEVV |
Ga0137374_100784411 | 3300012204 | Vadose Zone Soil | MSAIASVERDLRAAVAAEIVSASAAYLADQTEARGLRGHADAVALPRTAEE |
Ga0137374_111063712 | 3300012204 | Vadose Zone Soil | MSAVASIERDLRAAVSAEVVAPTAAYLTDMTEARGLSGRADAVALPR |
Ga0137379_110768122 | 3300012209 | Vadose Zone Soil | VNSVAALERELRAAVAADVVAPTAAYLTDMTEARGLSGRADAVAFPRTAEEV |
Ga0137377_117824242 | 3300012211 | Vadose Zone Soil | MTVQRTGSVERALRGAVTAEVTPPSAHYLADQTEGRGIRGRADAVALPRTAEEAAEV |
Ga0137386_110312111 | 3300012351 | Vadose Zone Soil | MSAVASVERDLRAAVAADVVAPTAAYLTDMTEARGLSGRADAVALPRTVEEVAE |
Ga0137366_111491811 | 3300012354 | Vadose Zone Soil | MSALASVERDLRAAVAAEVVAPNATYLIDMTEARGLSGRADAVALPRTAQE |
Ga0137369_107745571 | 3300012355 | Vadose Zone Soil | MSVTASVERELRAAVTSEVVAPSAAYLADETEARGLRGLADAVAL |
Ga0137371_109178021 | 3300012356 | Vadose Zone Soil | VSVVASVERDLRAAVAADVVSPTAAYLTDMPEARGLSG |
Ga0137385_111587381 | 3300012359 | Vadose Zone Soil | MTATGSVQRELRASVAAEIVAPTAAYLSDETEGRGLHGRAD |
Ga0137375_102292593 | 3300012360 | Vadose Zone Soil | MSAIASVEHELRAAVAAEIVAPTAAYLADETEARGVRGHADAVALPR |
Ga0162650_1000885482 | 3300012939 | Soil | MSAVASIERDLRTAVSAEVVAPTAEYLTDQTEARGLKGRADAVALPRDAGEVAEIV |
Ga0164299_110201542 | 3300012958 | Soil | VSTVASVERDLRAGVAAEIVPPSAAYLTDQTEARGLSGRADAVALPRSADEVAEIV |
Ga0134110_104927942 | 3300012975 | Grasslands Soil | MSAVVAVERDLRAAVSADIVSPSAAYLTDQTEARGLSGRADAVALPRSSEEAAD |
Ga0134087_101511541 | 3300012977 | Grasslands Soil | VDLQRVASVERELAAAVSSDVVAPTAQYLADETEGRGLRGRADAVALPRNADEAAEV |
Ga0120150_10818641 | 3300013294 | Permafrost | VLASVERDLRAAVAADVVAPTATYLTDMTEARGLSGRADAVALPRTVEE |
Ga0134073_101827841 | 3300015356 | Grasslands Soil | VSAVASVERDLRAAVSADVVAPTSAYLTDMTEARGLHGRADAVALPRSAEEVAEVVAW |
Ga0134072_104295781 | 3300015357 | Grasslands Soil | MDLQRVASVERELAAAVSSDVVAPTAQYLADETEGRGLRGRADAVALPRNADEAAEVVAW |
Ga0134085_105640901 | 3300015359 | Grasslands Soil | VSAVASVERELREAVSADVVAPTAQYLADETEARGVRGRADAVALPRSAQEAAEV |
Ga0132255_1058607961 | 3300015374 | Arabidopsis Rhizosphere | MSAVASIERELRAAVAADVVAPSSEYLGDQTEARGYHGRAD |
Ga0134069_11522762 | 3300017654 | Grasslands Soil | VNSVAALERELRAAVAADVVAPTAAYLTDMTEARGLSGRADAVAVPRSADE |
Ga0187776_105487781 | 3300017966 | Tropical Peatland | MSAVASIERDLRAAVAADVVAPSAAYLTDMTEARGLSGRADAVA |
Ga0184608_102906652 | 3300018028 | Groundwater Sediment | MSAVASVERDLRAAVAAEVVAPTAAYLTDMTEARGLIGR |
Ga0184619_103001021 | 3300018061 | Groundwater Sediment | MSAVASVERNLRAGVSAEVVAPTAHYLTDMTEARGLSGRADAVALP |
Ga0066655_108421231 | 3300018431 | Grasslands Soil | MSPVASVERELRASVAAEVVAPTAAYLSDETEARGIRGHADAVALPRTAEEVAEV |
Ga0066667_103355231 | 3300018433 | Grasslands Soil | MSPVAPVERELQASVAAEVVAPTAAYLSDETEARGIRGHADAVALPRTAEEV |
Ga0066667_115972302 | 3300018433 | Grasslands Soil | VSAVASVERELREAVSADVVAPTAQYLADETEARGVR |
Ga0193704_10430291 | 3300019867 | Soil | MSALASVERDLRAAVAAEVIAPSAAYLTDQTEARGLGGRA |
Ga0193701_10827001 | 3300019875 | Soil | MSATASVERDLGAAVAADVVAPTAAYLTDMTEARGLIGHADAVALPRTAEEVA |
Ga0193731_10647403 | 3300020001 | Soil | MSAVASVERDLRAAVPAEIVAPSAAYLTDQTEARGLVGRADAVALPRNAEEVAQIVSWCYAHGVP |
Ga0193719_104583582 | 3300021344 | Soil | MSTVASVERDLRAAVAADVVAPTAAYLTDMTEARGLSGRADAVALPRT |
Ga0193695_10318603 | 3300021418 | Soil | MSAVASVERDLRAAVAADVVAPTAAYLTDMTEARGLIGHADAVALPRTAEQVA |
Ga0222622_112225082 | 3300022756 | Groundwater Sediment | MSTVASVERDLRAAVGADVVAPTSAYLTDMTEARGLIGRADAV |
Ga0222622_114348511 | 3300022756 | Groundwater Sediment | MSAVAAVERELRTAVSADIVSPSAAYLTDQTEARGLSGRADAV |
Ga0207642_100438864 | 3300025899 | Miscanthus Rhizosphere | MSALASIERDLRAAVAAEVIAPSAAYLTDQTEARGLGGRADAVALPRSAEEVAEVVSWC |
Ga0207671_103390561 | 3300025914 | Corn Rhizosphere | MSALASIERDLRAAVAAEVIAPSAAYLTDQTEARGLGGRADAVALPRSAEEVVEVVSWC |
Ga0207693_101213023 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MSAVAAIERDLRAAVDADVVAPTAAYLTDMTEARGLAGRADAVALPRTADEA |
Ga0207661_121433042 | 3300025944 | Corn Rhizosphere | MSAVTSIERDLRAAVSAEVLAPTTAYLTDMTEARGLHGRADAVAL |
Ga0209027_11413951 | 3300026300 | Grasslands Soil | MTAVASVQRELRAAVAAEIAAPTASYLSDETEARGLRGRADAVAL |
Ga0209375_12407431 | 3300026329 | Soil | VSAVASVERELREAVSADVVAPTAQYLADETEARGVRGRADAVAL |
Ga0209896_10422231 | 3300027006 | Groundwater Sand | MSAVASVERELRTAVAAEIIAPSAAYLTDQTEARGLRGRADAVALPH |
Ga0209842_10057891 | 3300027379 | Groundwater Sand | MSAVASVERELRTAVAAEIIAPSAAYLTDQTEARGLRGRADAVA |
Ga0209580_100228971 | 3300027842 | Surface Soil | MSAVASIERDLRAAVAAEVVAPTAQYLADETEGRGVHGRGDAVALPRSAEEAAE |
Ga0268264_101045804 | 3300028381 | Switchgrass Rhizosphere | MSALASIERDLRAAVAAEVIAPSAAYLTDQTEARGL |
Ga0307291_10187513 | 3300028707 | Soil | MSALASVERDLRAAVAAEVIAPSAAYLTDQTEARGLGGRADAVALPH |
Ga0307313_102117021 | 3300028715 | Soil | MSAVAAVERDLRAAVSADIVSPSAAYLTDQTEARGLSGRADAVALPRSSEEV |
Ga0307307_102886701 | 3300028718 | Soil | MSAVASVERDLRAAVPAEIVAPSATYLTDQTEARGLVGRADAVALPR |
Ga0307280_100017821 | 3300028768 | Soil | MSAVASVERDLRAAVPAEIVAPSAAYLTDQTEARGLVGRADAVALPRNAEEV |
Ga0307320_102155042 | 3300028771 | Soil | MSAVAAVERDLRAAVSADIVSPSAAYLTDQTEARGLSGRADAVALPRS |
Ga0307290_100999021 | 3300028791 | Soil | MSATASIERDLGAAVAADVVAPTAAYLTDMTEARGLIGHADAVALP |
Ga0307281_100186643 | 3300028803 | Soil | MSAVASVERELRTAVTAEVIAPTAAYLTDMTEARGLSGRADAVALPRNAEEVAEVV |
Ga0307305_101226823 | 3300028807 | Soil | MTALASVERELRAAVTADVVAPTAAYLTDMTEARGLSGRADAVALPRTAEEVAEVV |
Ga0307292_100000971 | 3300028811 | Soil | MSAVASVERDLRAAVPAEIVAPSAAYLTDQTEARGLVGRADAVALPRNAE |
Ga0307292_100039171 | 3300028811 | Soil | MSTVASVERDLRAAVTAEVVAPTAAYLTDMTEARGLIGRADAVALPRTAEEVAEVVGWC |
Ga0307302_101577781 | 3300028814 | Soil | MSTVASVERDLRAAVAAEVVAPTAAYLTDMTEARGLS |
Ga0307302_104315771 | 3300028814 | Soil | MSALASVERDLRAAVAAEVIAPSAAYLTDQTEARG |
Ga0307296_100504254 | 3300028819 | Soil | MSAVASVERDLRAAVPAEIVAPSAAYLTDQTEARGLVGRADAVAL |
Ga0307310_104163812 | 3300028824 | Soil | MSAVASIERELRAAVAADVVAPTAAYLTDMTEARGLIGRADAVALPRTAEEVAEIVA |
Ga0307286_101612631 | 3300028876 | Soil | MTALASVERDLRAAVSAEVIAPTADYLTDMTEARGLAGRADAV |
Ga0307277_101135483 | 3300028881 | Soil | MSAVASVERDLRAAVPAEIVAPSAAYLTDQTEARGLVGRAD |
Ga0307308_101147973 | 3300028884 | Soil | MTALASVERELRAAVTADVVAPTAAYLTDMTEARGLSGRADAVALPRTAEEVAEV |
Ga0307308_101171051 | 3300028884 | Soil | MSALASVERDLRAAVAADVVTPTAAYLTDMTEARGLSGRADAVALPQTVEEVAEVV |
Ga0307495_101088591 | 3300031199 | Soil | MTAVASVERDLRAAVAADVVAPTAAYLTDMTEARGLIGRADAVALPRTAEEV |
Ga0307469_113902062 | 3300031720 | Hardwood Forest Soil | MTAVASVERDLRAAVAADVVAPTAAYLTDMTEARGLIGRADAVTLPRTAEE |
Ga0308176_127209732 | 3300031996 | Soil | MSAVASIERDLRAAVSADVTAPTAAYLTDMTEARGLSGRADAVALPRTAEEV |
Ga0307472_1003496113 | 3300032205 | Hardwood Forest Soil | MSALASIERDLRAAVAAEVIAPSASYLTDQTEARGLGGRADAVALP |
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