NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F082588

Metagenome Family F082588

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F082588
Family Type Metagenome
Number of Sequences 113
Average Sequence Length 44 residues
Representative Sequence MDLVAFQYDRSFVLDALRNGEIDYLEHVSEAAEADLFRHLIRRQ
Number of Associated Samples 104
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 84.96 %
% of genes near scaffold ends (potentially truncated) 96.46 %
% of genes from short scaffolds (< 2000 bps) 96.46 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (99.115 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment
(12.389 % of family members)
Environment Ontology (ENVO) Unclassified
(23.894 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(31.858 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72
1A_all_C_01574830
2Ga0066815_100438712
3Ga0066678_108045932
4Ga0066676_106148032
5Ga0066692_109104081
6Ga0066707_108068941
7Ga0066706_103738453
8Ga0066794_101204883
9Ga0075527_101091492
10Ga0079222_105078932
11Ga0066665_115388971
12Ga0075421_1010323392
13Ga0066797_13653011
14Ga0066710_1014269232
15Ga0105152_104985341
16Ga0105095_103281512
17Ga0099828_111264132
18Ga0102851_109378031
19Ga0066709_1015820293
20Ga0075423_104403213
21Ga0105097_101095971
22Ga0116221_11126231
23Ga0116107_10770281
24Ga0116119_11161242
25Ga0116114_11321812
26Ga0116124_12176421
27Ga0116215_15036521
28Ga0116217_104223682
29Ga0116131_12135512
30Ga0116130_12732572
31Ga0105064_10498033
32Ga0116219_107669211
33Ga0134088_106399862
34Ga0136847_107868092
35Ga0114922_108394691
36Ga0137342_10669022
37Ga0137381_110959991
38Ga0137369_104838752
39Ga0137390_108487982
40Ga0137407_115060592
41Ga0137407_118643231
42Ga0181524_104626653
43Ga0182021_101226503
44Ga0182021_114418062
45Ga0182027_104288291
46Ga0182027_108697461
47Ga0180083_11131531
48Ga0182035_106252532
49Ga0182039_112541312
50Ga0187820_13142132
51Ga0187819_103558711
52Ga0187822_102330781
53Ga0187804_103999662
54Ga0187880_12103631
55Ga0187882_11030853
56Ga0187864_101682952
57Ga0187864_102868162
58Ga0187889_101277073
59Ga0184621_100961991
60Ga0187858_103969831
61Ga0184636_13190112
62Ga0187772_105156811
63Ga0187770_105231673
64Ga0187770_109920681
65Ga0182022_10101511
66Ga0179596_102578831
67Ga0179596_105286371
68Ga0208321_10384612
69Ga0208686_10689232
70Ga0209748_10498294
71Ga0209182_102027722
72Ga0209176_100758482
73Ga0210124_11420523
74Ga0257164_10194981
75Ga0179587_107364672
76Ga0207852_10240012
77Ga0209329_10137401
78Ga0233416_103017031
79Ga0209580_100225871
80Ga0209590_109174211
81Ga0233418_103035511
82Ga0302323_1028354082
83Ga0318541_106099381
84Ga0318496_107928452
85Ga0315293_111497632
86Ga0315293_112404382
87Ga0318554_107680591
88Ga0315288_113226212
89Ga0318568_105108302
90Ga0310917_100432964
91Ga0315290_108757892
92Ga0318495_102328602
93Ga0306919_101596583
94Ga0315289_106542312
95Ga0318506_104186612
96Ga0318506_104187642
97Ga0315284_122578572
98Ga0315282_105930842
99Ga0318525_103218702
100Ga0315277_109862662
101Ga0315292_112238961
102Ga0315292_115931331
103Ga0315270_105266572
104Ga0315287_109607802
105Ga0335076_101079293
106Ga0316619_117840461
107Ga0316625_1017863011
108Ga0316617_1006048203
109Ga0364928_0088670_1_147
110Ga0334817_060979_623_733
111Ga0370484_0022553_1_108
112Ga0373909_0279512_3_137
113Ga0373914_0167022_423_566
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 47.22%    β-sheet: 0.00%    Coil/Unstructured: 52.78%
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510152025303540MDLVAFQYDRSFVLDALRNGEIDYLEHVSEAAEADLFRHLIRRQSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
99.1%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Sediment
Lake Sediment
Freshwater Sediment
Peatland
Bog
Peatland
Freshwater Wetlands
Freshwater Sediment
Deep Subsurface
Natural And Restored Wetlands
Soil
Groundwater Sediment
Soil
Vadose Zone Soil
Grasslands Soil
Surface Soil
Peatlands Soil
Agricultural Soil
Arctic Peat Soil
Soil
Soil
Grasslands Soil
Soil
Soil
Soil
Untreated Peat Soil
Tropical Peatland
Fen
Soil
Tropical Forest Soil
Forest Soil
Groundwater Sand
Soil
Fen
Sediment
Populus Rhizosphere
Sediment Slurry
12.4%5.3%7.1%3.5%8.8%3.5%5.3%8.8%3.5%4.4%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
A_all_C_015748302140918007SoilMDLISFQYDRSFVLEALRQGDIDYLEHVSEAAEADLFRH
Ga0066815_1004387123300005164SoilMDLAAFQYDRSFVLDALRHGNLDYLEHVSEAAEADLFRHLIRR
Ga0066678_1080459323300005181SoilVDLLAFQYDRSFVLDALRQGEIDCLEHVSEAAEADLFRHLIRRQVIQ
Ga0066676_1061480323300005186SoilMDLISFPYDRSFVLEALRHGDIDYLEPVSEAAEADLFRHL
Ga0066692_1091040813300005555SoilMDLVAFENDRKFVLEGLRQGQVDYVEHVSEAAEADLFRHLV
Ga0066707_1080689413300005556SoilMDFAAFEYDRTFVIEALRRGAIDYLENISEAEEADLFRHLLGRDVWERLAEHYPTP
Ga0066706_1037384533300005598SoilMDLLGFQYDRSFVLAALRQGNIDYLEHVSEAAEADLFRHLIRRQ
Ga0066794_1012048833300005947SoilMDLVAFHFDRSFVLDALRQGEIDYLEHVSEAAEADLFRHLIGRQ
Ga0075527_1010914923300006640Arctic Peat SoilMDLVAFHFDRSFVLEALRQGEIDYLEHVSEAAEADLFRH
Ga0079222_1050789323300006755Agricultural SoilMDLISFHYDRSFALEALRNGDIDYLEHVSEAAEADLFRHL
Ga0066665_1153889713300006796SoilMDFVAFEHDRPLVIEALRRGEVDYLEHVSEAAEAD
Ga0075421_10103233923300006845Populus RhizosphereMHLVTFQYDRSFVLEALRQGNIDYLEHVSEAAEADLFRHLFRRQVI
Ga0066797_136530113300006864SoilMDLVAFHYDRSFVLDALRQGEIDYLEHVSEAAEADLFRHLIGRQ
Ga0066710_10142692323300009012Grasslands SoilMDFDAFEYDRKFVIEALRCGEIDYLENVSEAEEADLFRHLLGRDVLERLAEHYP
Ga0105152_1049853413300009039Lake SedimentMNAILFDHDRPFVIDALRRGEVDYLENVGQAVEAD
Ga0105095_1032815123300009053Freshwater SedimentMDLISFQYDRSFVLNALRNGDIDYLEHVSEAAEADLFRHLI
Ga0099828_1112641323300009089Vadose Zone SoilMDLAAFEHDRQFVIEALRRGEIDYLENVSEAAEADLFRHL
Ga0102851_1093780313300009091Freshwater WetlandsMDLIAFQYDRSLVLEALRRGEIDYLENVSEAAEADFCRHLIRRDV
Ga0066709_10158202933300009137Grasslands SoilMDLAAFELDRQFVIDALYRGQIHFLENVSQAAEADFFRHLIGR
Ga0075423_1044032133300009162Populus RhizosphereMDLIAFQYDRSFVLEALRRGEIDCLEHVSEAAEADLFRHLIRRQVIQRLAETFP*
Ga0105097_1010959713300009169Freshwater SedimentTLMDLVAFQYDRSFVLDALRRGEIDYLENVSEAA*
Ga0116221_111262313300009523Peatlands SoilMDLAAFEHDRKFVIEALRRGEIDYLENVSEAAEADLFRHLLGRDVL
Ga0116107_107702813300009548PeatlandMDLVAFHYDRAFVLDALHQGEIDYLEHVSEAAEADLF
Ga0116119_111612423300009629PeatlandVNLTVFEHDRPFVIGDLRRGEGDYLENVSEAAEANLCRH
Ga0116114_113218123300009630PeatlandVNLTVFEHDRPFVIDALRRGEVDYLENVSEAAEANLFRHLIDRRVL
Ga0116124_121764213300009634PeatlandVNLTLFEHDRQFVIDALRRGELDYLENVSEAAEANLFRHLIDRRVLQRLAESYPSP
Ga0116215_150365213300009672Peatlands SoilVNLTVFEHDRQFGIAALRRGEVDYRENVSEAAEANWFRHLIDRRV
Ga0116217_1042236823300009700Peatlands SoilVNLTVFEHDRPFVIEALRQGEVDYLENVSEAAEANLFRHLIDRRVLERLAESYPSP
Ga0116131_121355123300009760PeatlandMVNLTVFEHDRPFVIEALRRGEVDYLENVSEAAEANLFRHPIDRRVLARLAE
Ga0116130_127325723300009762PeatlandVNLTVFEHDRPFVIEALRRGEVDYLENVSEAAEANLFRHLID
Ga0105064_104980333300009821Groundwater SandMAFVAFEHDRPFVIDALRHGEVDYLESVTEAAEADLFRHLISRDV
Ga0116219_1076692113300009824Peatlands SoilVNLTVFEHDRQFVIEALRQGEVDYLENVSEAAEANLFRHLIDRRVLERLAESYPS
Ga0134088_1063998623300010304Grasslands SoilMDLVSFQYDRSFVLEALRQGDVDYLEHVSEAAEADWFRHLIRRQVIQRLA
Ga0136847_1078680923300010391Freshwater SedimentMDLVAFHYNRSFVLEALRHGEIDYGEHVCEAAEADLFRHLLRR
Ga0114922_1083946913300011118Deep SubsurfaceMDLLAFEHDRGFVVKALRRGEIDYLEPVTEAVEAD
Ga0137342_106690223300012171SoilMDLVAFHYDRSFVLDALRQGEIDYLEQVSEAAEADLFR
Ga0137381_1109599913300012207Vadose Zone SoilMDFVAFENDRKFVLEGLRHGEVDYVESVSEAAEADL
Ga0137369_1048387523300012355Vadose Zone SoilMDLVSFQYDRSFVLEALRQGDIDYLEHVSEAAEADLFRHLIRR
Ga0137390_1084879823300012363Vadose Zone SoilMDLISFQHDRSFVLDALRQGDVDYLEHVSEAAEADLFRHL
Ga0137407_1150605923300012930Vadose Zone SoilMDFVAFENDRKFVLEGLRRGEVDYVEHVSEAAEADLFRHLI
Ga0137407_1186432313300012930Vadose Zone SoilMDWVAFENDRQFVLEGLRRGEVDYVEHVSEAAEADLFR
Ga0181524_1046266533300014155BogVNLTVFEHDRQFVIEALRRGELDCLENVSEAAEASLFRHLLDRRVLERLAESYP
Ga0182021_1012265033300014502FenMVNLTVFEHDRPFVIEALHRGEVDYLENVSEAAEANLFRHLTDRQV
Ga0182021_1144180623300014502FenVNLTVFEHDRQFVIAALRRGEVDYLENVSEAAEANL
Ga0182027_1042882913300014839FenVNLTVFEHDRPFVIEALRRGEVDYLENVSEAAEANLFRHLIDRRVLER
Ga0182027_1086974613300014839FenVNLTVFEHDRPFVIEALRRGEVDYLENVSEAAEANLFRHLIDRRVLERLAES
Ga0180083_111315313300014875SoilMDLVAFQYDRNFVVDALQRGEIDALENVSEAAEADLFRHLIGRGVL
Ga0182035_1062525323300016341SoilMDLVAFEHDRSFILEALRRGEIDYLEHVGEALEGDFFRQLIDRQVLQRLADSYPTLCGIFFLIS
Ga0182039_1125413123300016422SoilMDLVAFQYDCSFVLDALRNGEVDYLEHVSEAAEADLFRHLIRRQVIQRLADTY
Ga0187820_131421323300017924Freshwater SedimentVNLTVFEHDRQFVIEALRRGELDYLENVSEAAEANLFRHLLDRQVLERLAESYPS
Ga0187819_1035587113300017943Freshwater SedimentMDLTAFQYDRSFVLDALRHGDLDYLEHVSEAAEADLFRHLIRRQ
Ga0187822_1023307813300017994Freshwater SedimentMDLTAFQYDRSFVLDALRHGDLDYLEHVSEAAEADLF
Ga0187804_1039996623300018006Freshwater SedimentVNLTVFAHDRPLVIEALRRGEVDYLENVAEAAEAN
Ga0187880_121036313300018016PeatlandVNLTVFEHDRQFVIEALRRGEVDYLENVSEAAEANLFRHL
Ga0187882_110308533300018021PeatlandMDLTAFSYDRSFVLDALRQGEINYLEHVSEAAEADLFRHLIRRQVVQRLA
Ga0187864_1016829523300018022PeatlandVNLTVFEHDRPFVIEALRRGEVDYLENVSEAAEANLFRHLI
Ga0187864_1028681623300018022PeatlandVNLTVFEHDRQFVIEALRRGELDYLENVSEAAEASLFRHLLDR
Ga0187889_1012770733300018023PeatlandVNLTLFEHDRQFVIDALRRGELDYLENVSEAAEANLFRHL
Ga0184621_1009619913300018054Groundwater SedimentMELVAFENDRKFVLEGLRHGEVDYVEHVSEAAEADLFRHLISRDVLTRLAETY
Ga0187858_1039698313300018057PeatlandVNLTVFEHDRPFVVDALRRGELDYLENVSEAAEANLFRHLI
Ga0184636_131901123300018068Groundwater SedimentMDLVGLQFDRPFVLDALSRGEIDYLENVSEAAEADLFRKLIRRDVL
Ga0187772_1051568113300018085Tropical PeatlandVNLIGFEYDRGFVLKALRQGEVDYLESVSEAVEADLFRHLIDRR
Ga0187770_1052316733300018090Tropical PeatlandVNLTVFERDRQLVIEALRRGELDYLENVSEAAEAGLFRHLLDRRVLERLA
Ga0187770_1099206813300018090Tropical PeatlandMNLIAFEHDRRFVVEALRQGEVDYLENVSEAVEADLFRHLIDRRVLARLA
Ga0182022_101015113300019785FenMDLAVFSYDRSFVLDALRQGEIDYLEHVSEAAEADLFRHLRLV
Ga0179596_1025788313300021086Vadose Zone SoilMDLAAFQYDRSFVLDALRHGDLDYLEHVSEAAEADLFRHLLRRQVIQ
Ga0179596_1052863713300021086Vadose Zone SoilMDLVAFQYDRSFVLDALQHGDLDYLEHVSEAAEADLFRHLIQRQVIQRLADSYPSPRN
Ga0208321_103846123300025409PeatlandVNLTLFEHDRQFVIDALRRGELDYLENVSEAAEANLFRHLIDRRVL
Ga0208686_106892323300025500PeatlandVNLTVFEHDRQFVIEALRRGELDYLENVSEAAEASLFRH
Ga0209748_104982943300025836Arctic Peat SoilMDLVAFHFDRSFVLDALRQGEIDYLEHVSEAAEADLF
Ga0209182_1020277223300025843Lake SedimentMDLAAFHYDRSFVLDALRHGEIDYLEHVSEAAEADLFRHLIGRQV
Ga0209176_1007584823300025854Arctic Peat SoilMDLVAFHFDRSFVLDALRQGEIDYLEHVSEAAEADLFRHLIGRQVVQRLA
Ga0210124_114205233300026007Natural And Restored WetlandsMDLLAFEHDRLFVLQALRQGEIDYLEPVTEAVEADF
Ga0257164_101949813300026497SoilMDWVAFENDRKFVLEGLRRGEVDYVEHVSEAAEADLFRHLISRDV
Ga0179587_1073646723300026557Vadose Zone SoilMDWVAFENDRKFVLEGLRHGEVDYVEHVSEAAEADLFRHLVSRD
Ga0207852_102400123300026959Tropical Forest SoilMHLLAFEYDRPFILEALRRGQIDYLEHVGEALEGDFFRQ
Ga0209329_101374013300027605Forest SoilMDLAAFEYDRQFVIEALRRGEIDFLENVSEAAEADLFRHLLGRDVLE
(restricted) Ga0233416_1030170313300027799SedimentMDLVLFEHDRDFVVSALREGNLDYLEHVSEAAETELFRH
Ga0209580_1002258713300027842Surface SoilMDLISFHYDRSFALEALRNGDIDYLEHVSEAAEADLFRHLIRRQVIQRLAETW
Ga0209590_1091742113300027882Vadose Zone SoilVDFAAFEHDPKFVIESLRRGEIDYLENLSEAAEADFFRHLIG
(restricted) Ga0233418_1030355113300027995SedimentMDLIAFKYDRSFVVEALSRGEIDYLEPVSEAAEADF
Ga0302323_10283540823300031232FenMDLVAFHYDRSFVLDALRQGEIDYLEHVSEAAEADLFRHLIGRQERPTPGRYLSH
Ga0318541_1060993813300031545SoilMDLVAFQYDCSFVLDALRNGEVDYLEHVSEAAEADLFRHLIRRQVIQRLAD
Ga0318496_1079284523300031713SoilMDLISFQYDRSFVLDALRQGDIDYLEHVSEAAEADLFRHLIRRQVIQRLAET
Ga0315293_1114976323300031746SedimentMNLVLFEHDRQFVIEALRRGQVDYLENVGQAVETD
Ga0315293_1124043823300031746SedimentMDLVAFHYDRSFVLDALRQSEIDYLEHVSEAAEADLFRHLIGRQVVQRL
Ga0318554_1076805913300031765SoilPKVMDLVAFEYDRSFILEALRRGEIDYLEHVGEALEGDFFR
Ga0315288_1132262123300031772SedimentMDLVGFQFDRPFVLDALSRGEIDFLENVSEAAEADF
Ga0318568_1051083023300031819SoilMDLISFQYDRSFVLDALRQGDIDYLEHVSEAAEADLFRHLIRRQVIQRL
Ga0310917_1004329643300031833SoilTPKVMDLVAFEYDRSFILEALRRGEIDYLEHVGEALEGDFFR
Ga0315290_1087578923300031834SedimentMNLVLFEHDRQFVIEALRRGQVDYLENVGQAVETDLFR
Ga0318495_1023286023300031860SoilMDLISFQYDRSFVLDALRQGDIDYLEHVSEAAEADLFR
Ga0306919_1015965833300031879SoilMDLVAFEYDRSFILEALRRGEIDYLEHVGEALEGDFFR
Ga0315289_1065423123300032046SedimentMDLIGLQFDRPFVLDALSRGENDYLEHVSEAAEAS
Ga0318506_1041866123300032052SoilMDLVAFQYDCSFVLDALRNGEVDYLEHVSEAAEADLFRHLIRRQVIQ
Ga0318506_1041876423300032052SoilMDLISFQYDRSFVLDALRQGDIDYLEHVSEAAEADLFRHLIRR
Ga0315284_1225785723300032053SedimentMDLVAFQYDRSFVLDALRNGEIDYLEHVSEAAEADLFRHLIRRQ
Ga0315282_1059308423300032069SedimentMDLLTFQYDRSFVLDALRQGDIDYLEHVSEAAEADWFRHLIRRQV
Ga0318525_1032187023300032089SoilMDLISFQYDRSFVLDALRQGDIDYLEHVSEAAEADLFRHLIRRQVIQRLAE
Ga0315277_1098626623300032118SedimentMDLITFQYDRSFVLGALRQGDIDYLEHVSEAAEADLFRHLIRRQVVQRLAET
Ga0315292_1122389613300032143SedimentMDFVAFEYDRKFVLEGLRHGEVDYVEAVTEAAETDLFRHLI
Ga0315292_1159313313300032143SedimentMDLIGLQFDRPFVLDALSRGEIDFLENVSEAAEADF
Ga0315270_1052665723300032275SedimentMDFVAFEHDRKFVLDALRNGEVDYLESVNEAAEADLFRHLISRDVLN
Ga0315287_1096078023300032397SedimentMDLLALEYDRDFVIEAMRQGQLDYLEHVSEAAETDFFRHLIGRGVLA
Ga0335076_1010792933300032955SoilMDLISFQYDRSFVLDALRNGDVDYLENVSEAAEADLF
Ga0316619_1178404613300033414SoilMDLVAFQYDRNFVVDALQRGEIDALENVSEAAEADLFRHLIGRGVLN
Ga0316625_10178630113300033418SoilMDLVAFQFDRPFVLDALSRGEIDYLEHVSEAAEAGFFRQL
Ga0316617_10060482033300033557SoilMDLVAFQFDRPLVLDALSRGEIDYLEHVSEAAEAGFFRHLIRR
Ga0364928_0088670_1_1473300033813SedimentMDLVAFHYDRSFVLDALRQGEIDYLEHVSEAAEADLFRHLIRRQVVQRL
Ga0334817_060979_623_7333300033820SoilMDLVAFQYDRSFVLEALRRGEIDCLEHVSEAAEADFF
Ga0370484_0022553_1_1083300034125Untreated Peat SoilMDLVAFHFDRSFVLDALRQGEIDYLEHVSEAAEADL
Ga0373909_0279512_3_1373300034191Sediment SlurryMDLLAFQYDRSFVLDALRHGDIDYLEHVGEAAEADLFRHLIRRQV
Ga0373914_0167022_423_5663300034419Sediment SlurryMNLMVFEHDQQFVIDALRRGEVDYLENVSEAAETELFRHLIGRGVLKR


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