Metagenome / Metatranscriptome Family F082310

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082310
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	53 residues
Representative Sequence	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHAD
Number of Associated Samples	96
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.07 %
% of genes near scaffold ends (potentially truncated)	24.78 %
% of genes from short scaffolds (< 2000 bps)	77.88 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.690 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (38.053 % of family members)
Environment Ontology (ENVO)	Unclassified (53.097 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (52.212 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.07% β-sheet: 16.87% Coil/Unstructured: 65.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF03401	TctC	38.94
PF01977	UbiD	31.86
PF00005	ABC_tran	2.65
PF04909	Amidohydro_2	1.77
PF03450	CO_deh_flav_C	1.77
PF01799	Fer2_2	1.77
PF04011	LemA	0.88
PF03600	CitMHS	0.88
PF05199	GMC_oxred_C	0.88
PF08530	PepX_C	0.88
PF13719	zinc_ribbon_5	0.88
PF00111	Fer2	0.88
PF13533	Biotin_lipoyl_2	0.88
PF02668	TauD	0.88
PF00668	Condensation	0.88
PF04367	DUF502	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	38.94
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	31.86
COG1020	EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.88
COG2928	Uncharacterized membrane protein	Function unknown [S]	0.88
COG2936	Predicted acyl esterase	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.69 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.69 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.69 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.31 %
Unclassified	root	N/A	5.31 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	33.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5.31 %
Unclassified	root	N/A	5.31 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	25.66 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5.31 %
Unclassified	root	N/A	5.31 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.65 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	25.66 %
Unclassified	root	N/A	5.31 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	4.42 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.88 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	25.66 %
Unclassified	root	N/A	5.31 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	4.42 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.88 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	25.66 %
Unclassified	root	N/A	5.31 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	4.42 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.88 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	25.66 %
Unclassified	root	N/A	5.31 %
Nocardioides humi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides humi	4.42 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.88 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_104887874	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300000956\|JGI10216J12902_105921251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1233	Open in IMG/M
3300002121\|C687J26615_10000564	All Organisms → cellular organisms → Bacteria → Proteobacteria	6315	Open in IMG/M
3300002122\|C687J26623_10157839	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300003310\|D1draft_1020758	All Organisms → cellular organisms → Bacteria	2136	Open in IMG/M
3300004013\|Ga0055465_10240554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	607	Open in IMG/M
3300004047\|Ga0055499_10086533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	561	Open in IMG/M
3300004061\|Ga0055487_10081776	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300004268\|Ga0066398_10089290	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300004463\|Ga0063356_100480696	Not Available	1634	Open in IMG/M
3300005204\|Ga0068997_10042593	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300005218\|Ga0068996_10053366	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300005829\|Ga0074479_11031599	All Organisms → cellular organisms → Bacteria → Proteobacteria	25625	Open in IMG/M
3300006844\|Ga0075428_102240628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	563	Open in IMG/M
3300006853\|Ga0075420_101800641	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300006854\|Ga0075425_101733041	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300006894\|Ga0079215_11561007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides humi	523	Open in IMG/M
3300007004\|Ga0079218_12065236	Not Available	654	Open in IMG/M
3300007076\|Ga0075435_101255907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides humi	648	Open in IMG/M
3300007177\|Ga0102978_1273512	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300009087\|Ga0105107_10002086	All Organisms → cellular organisms → Bacteria → Proteobacteria	13142	Open in IMG/M
3300009095\|Ga0079224_102898518	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300009147\|Ga0114129_11858858	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300009161\|Ga0114966_10027626	All Organisms → cellular organisms → Bacteria	4219	Open in IMG/M
3300009162\|Ga0075423_10666568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1097	Open in IMG/M
3300009167\|Ga0113563_13902943	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300009181\|Ga0114969_10579224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	618	Open in IMG/M
3300009597\|Ga0105259_1001108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4534	Open in IMG/M
3300009609\|Ga0105347_1015736	All Organisms → cellular organisms → Bacteria	2581	Open in IMG/M
3300009873\|Ga0131077_10143165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2711	Open in IMG/M
3300010362\|Ga0126377_10289590	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300010362\|Ga0126377_13147817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides humi	533	Open in IMG/M
3300010885\|Ga0133913_10001316	All Organisms → cellular organisms → Bacteria	58213	Open in IMG/M
3300011395\|Ga0137315_1055750	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300011397\|Ga0137444_1043854	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300011399\|Ga0137466_1011465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1074	Open in IMG/M
3300011402\|Ga0137356_1080780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	619	Open in IMG/M
3300011405\|Ga0137340_1065469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	700	Open in IMG/M
3300011406\|Ga0137454_1032827	Not Available	765	Open in IMG/M
3300011406\|Ga0137454_1053200	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300011407\|Ga0137450_1001448	All Organisms → cellular organisms → Bacteria → Proteobacteria	3009	Open in IMG/M
3300011409\|Ga0137323_1007320	All Organisms → cellular organisms → Bacteria	2625	Open in IMG/M
3300011410\|Ga0137440_1066149	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300011410\|Ga0137440_1105258	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300011415\|Ga0137325_1123152	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300011419\|Ga0137446_1029187	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300011425\|Ga0137441_1144888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	590	Open in IMG/M
3300011428\|Ga0137456_1142112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	643	Open in IMG/M
3300011428\|Ga0137456_1160059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	605	Open in IMG/M
3300011428\|Ga0137456_1184866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	563	Open in IMG/M
3300011434\|Ga0137464_1228417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	564	Open in IMG/M
3300011438\|Ga0137451_1000102	All Organisms → cellular organisms → Bacteria → Proteobacteria	25796	Open in IMG/M
3300011438\|Ga0137451_1047444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1258	Open in IMG/M
3300011442\|Ga0137437_1313326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	534	Open in IMG/M
3300011445\|Ga0137427_10100765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1166	Open in IMG/M
3300011445\|Ga0137427_10419876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	555	Open in IMG/M
3300012040\|Ga0137461_1014023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1932	Open in IMG/M
3300012040\|Ga0137461_1124579	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300012040\|Ga0137461_1187624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	608	Open in IMG/M
3300012152\|Ga0137347_1060498	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300012163\|Ga0137355_1036447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	912	Open in IMG/M
3300012226\|Ga0137447_1029924	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300012232\|Ga0137435_1041740	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300012232\|Ga0137435_1208604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	598	Open in IMG/M
3300012673\|Ga0137339_1007575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	932	Open in IMG/M
3300014318\|Ga0075351_1186775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	518	Open in IMG/M
3300014318\|Ga0075351_1188595	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300014861\|Ga0180061_1003788	All Organisms → cellular organisms → Bacteria	1892	Open in IMG/M
3300014863\|Ga0180060_1001559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1867	Open in IMG/M
3300014865\|Ga0180078_1031723	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300014880\|Ga0180082_1119937	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300015249\|Ga0180071_1000365	All Organisms → cellular organisms → Bacteria	2559	Open in IMG/M
3300015252\|Ga0180075_1096922	Not Available	525	Open in IMG/M
3300015253\|Ga0180081_1003540	All Organisms → cellular organisms → Bacteria	1861	Open in IMG/M
3300018055\|Ga0184616_10336079	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300018070\|Ga0184631_10157851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	917	Open in IMG/M
3300018083\|Ga0184628_10001227	All Organisms → cellular organisms → Bacteria → Proteobacteria	12773	Open in IMG/M
3300018083\|Ga0184628_10006768	All Organisms → cellular organisms → Bacteria	5490	Open in IMG/M
3300018469\|Ga0190270_13034282	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300019228\|Ga0180119_1302859	Not Available	535	Open in IMG/M
3300019248\|Ga0180117_1387754	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300019249\|Ga0184648_1128681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	672	Open in IMG/M
3300021602\|Ga0194060_10235148	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300022213\|Ga0224500_10360536	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300022214\|Ga0224505_10127062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	991	Open in IMG/M
3300025155\|Ga0209320_10195472	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300025159\|Ga0209619_10001681	All Organisms → cellular organisms → Bacteria → Proteobacteria	16150	Open in IMG/M
3300025160\|Ga0209109_10001423	All Organisms → cellular organisms → Bacteria → Proteobacteria	13203	Open in IMG/M
3300025165\|Ga0209108_10340344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	746	Open in IMG/M
3300025324\|Ga0209640_10122311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2235	Open in IMG/M
3300025324\|Ga0209640_10705325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	804	Open in IMG/M
3300025324\|Ga0209640_10706716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	803	Open in IMG/M
3300025954\|Ga0210135_1042789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	501	Open in IMG/M
3300025955\|Ga0210071_1005849	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300025966\|Ga0210105_1039847	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300025985\|Ga0210117_1085979	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	557	Open in IMG/M
3300027362\|Ga0208320_1000964	All Organisms → cellular organisms → Bacteria	3421	Open in IMG/M
3300027533\|Ga0208185_1005512	All Organisms → cellular organisms → Bacteria	3195	Open in IMG/M
3300027654\|Ga0209799_1141782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides humi	547	Open in IMG/M
3300027907\|Ga0207428_10730141	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300028803\|Ga0307281_10011516	All Organisms → cellular organisms → Bacteria → Proteobacteria	2456	Open in IMG/M
3300028809\|Ga0247824_10023350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3248	Open in IMG/M
3300028812\|Ga0247825_10087782	All Organisms → cellular organisms → Bacteria	2096	Open in IMG/M
3300031740\|Ga0307468_101777816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides humi	583	Open in IMG/M
3300031911\|Ga0307412_11256705	Not Available	665	Open in IMG/M
3300031965\|Ga0326597_10023461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7931	Open in IMG/M
3300031965\|Ga0326597_10026872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	7361	Open in IMG/M
3300032144\|Ga0315910_11309975	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300033004\|Ga0335084_11908451	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300033233\|Ga0334722_10218673	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300033550\|Ga0247829_10819192	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300033811\|Ga0364924_140270	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300033811\|Ga0364924_156957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	538	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.27%
Host-Associated	Host-Associated	7.96%
Engineered	Engineered	1.77%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	61.95%
Terrestrial	Environmental → Terrestrial	28.32%
Plants	Host-Associated → Plants	7.96%
Wastewater	Engineered → Wastewater	0.89%
Bioreactor	Engineered → Bioreactor	0.89%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	42.48%
Soil	Environmental → Terrestrial → Soil	26.55%
Freshwater	Environmental → Aquatic → Freshwater	9.73%
Marine	Environmental → Aquatic → Marine	9.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.08%
Floodplain	Environmental → Terrestrial → Floodplain	1.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.89%
Unclassified	Engineered → Bioreactor → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified	42.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	17.70%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.08%
Loam	Environmental → Terrestrial → Soil → Loam	6.19%
Lake	Environmental → Aquatic → Freshwater → Lake	5.31%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.65%
Sediment	Environmental → Aquatic → Marine → Sediment	1.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.89%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	42.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.62%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	7.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.08%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.42%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.54%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.65%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.77%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	38.05%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	7.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	4.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.54%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.65%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.65%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.77%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.89%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.89%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.89%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.89%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.89%
Down-Flow Hanging Sponge Reactor	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental	Open in IMG/M
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300003310	Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - L1-648F-DHS	Engineered	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004047	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1	Environmental	Open in IMG/M
3300004061	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005204	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007177	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009095	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300011395	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT200_2	Environmental	Open in IMG/M
3300011397	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT319_2	Environmental	Open in IMG/M
3300011399	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT842_2	Environmental	Open in IMG/M
3300011402	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT830_2	Environmental	Open in IMG/M
3300011405	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT400_2	Environmental	Open in IMG/M
3300011406	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2	Environmental	Open in IMG/M
3300011407	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT454_2	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011410	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2	Environmental	Open in IMG/M
3300011415	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011425	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT244_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300011434	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012152	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT590_2	Environmental	Open in IMG/M
3300012163	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT800_2	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012673	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT399_2	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014861	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT27_16_10D	Environmental	Open in IMG/M
3300014863	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT25_16_10D	Environmental	Open in IMG/M
3300014865	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10D	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300015249	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293A_16_10D	Environmental	Open in IMG/M
3300015252	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT399_16_10D	Environmental	Open in IMG/M
3300015253	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT590_16_10D	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021602	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5m	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022214	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_4_1	Environmental	Open in IMG/M
3300025155	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025954	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025955	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025966	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025985	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300027362	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1048878742	3300000956	Soil	MTGMRIFWSTCPKCMKAFVVAWELRHSKYQLICPHCGHRYMPDESAAIDER
JGI10216J12902_1059212511	3300000956	Soil	MRLFWSTCPKCIRAFVVEWALRHAGRQLICPYCRHRYLPDESAAIDDRYETQG*
C687J26615_100005646	3300002121	Soil	MTGMRLFWSTCPKCMKAFVVAWELRHAKRKLICPHCGHRYLPEQSAAIDERHAE*
C687J26623_101578391	3300002122	Soil	MTGMRLFWSTCPKCLKAFVVAWELRHSKRKLICPHCGHRYLPDQSAAIDERHAE
D1draft_10207582	3300003310	Down-Flow Hanging Sponge Reactor	MSGGMRLWWSTCPKCKKDFVVAWELRHAKYKLICPYCDHRYLPEESAKIDERHTE*
Ga0055465_102405542	3300004013	Natural And Restored Wetlands	MSGGMRLWWSTCPKCQKAFVVAWELRFAKYKLICPFCDHRYLPEQSAVIDERHAD*
Ga0055499_100865332	3300004047	Natural And Restored Wetlands	MTGMRLWWSTCPKCLKAFVVAWELRHAKYKLICPFCGHRYPPDQSAAIDERHAD*
Ga0055487_100817762	3300004061	Natural And Restored Wetlands	MSGGMRLWWATCPKCLKAFVGAWELRHAKYKLICPFCDHRYLPEQSAKIDERHTD*
Ga0066398_100892902	3300004268	Tropical Forest Soil	MRLFWSTCPKCIKAFVVEWALRHAGRQLICPFCKHRYLPEESAAIDDRYES*
Ga0063356_1004806961	3300004463	Arabidopsis Thaliana Rhizosphere	MSGGMRLWWSTCPKCRKEFVVAWELRHAKYKLICPYCDHRYLPDESARIDERHTD*
Ga0068997_100425932	3300005204	Natural And Restored Wetlands	MSGGMRLWWSTCPKCKKEFVVAWELRHAKYKLICPFCDHRYLPDQSAKIDERHAD*
Ga0068996_100533662	3300005218	Natural And Restored Wetlands	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEESAKIDERHA
Ga0074479_110315996	3300005829	Sediment (Intertidal)	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAAIDERHAD*
Ga0075428_1022406282	3300006844	Populus Rhizosphere	MRLFWSTCPGCQKAFVVAWELRHAGRQLICPFCANRYLPDESLALDERWNER*
Ga0075420_1018006412	3300006853	Populus Rhizosphere	RAGGLARRRQELAMRLFWSTCPGCQKAFVVAWELRHAGRQLICPFCANRYLPDESLALDERWNER*
Ga0075425_1017330412	3300006854	Populus Rhizosphere	MRLWWSTCPKCVKAFVVEWALRHAGRQLICPYCNHRYLPDESKAIDDRYEPSL*
Ga0079215_115610072	3300006894	Agricultural Soil	MRLFWSTCPKCVKAFVVEWALRHAGRQLICPYCNNRYLPDESKEIDDRYEVQN*
Ga0079218_120652361	3300007004	Agricultural Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAKYKLICPFCDHRYLPEESAKIDERHSD*
Ga0075435_1012559072	3300007076	Populus Rhizosphere	TCPKCVKAFVVEWALRHAGRQLICPYCNHRYLPDESKAIDDRYEPSL*
Ga0102978_12735122	3300007177	Freshwater Lake	MTGMRIFWSTCPKCMKAFVVAWELRHSKYKLICPHCGHRYMPDESAAIDERHAD*
Ga0105107_100020864	3300009087	Freshwater Sediment	MTGMRIFWSTCPKCMKGFVVAWELRHAKYKLICPHCGHRYLPDESAAIDERHAE*
Ga0079224_1028985182	3300009095	Agricultural Soil	MSSMRLWWSTCPKCLKAFVVAWELRHAKYKLICPYCDHRYLPEESAAIDERHAE*
Ga0114129_118588582	3300009147	Populus Rhizosphere	MRLWWSTCPKCTKAFVVEWALRHAGRQLICPYCSNRYLPDESKEIDDRYEPTQ*
Ga0114966_100276265	3300009161	Freshwater Lake	MKKIFTSTCPKCKSTFVVSWELRHAGLKLICPICGHRYLPDKSLAIDEREQH*
Ga0075423_106665681	3300009162	Populus Rhizosphere	MRLFWSTCPKCLKAFVVEWALRHAGRQLICPYCKNRYLPDESAAIDDRYETQG*
Ga0113563_139029431	3300009167	Freshwater Wetlands	MTGMRIFWSTCPKCMKAFVVAWELRHAKYKLICPHCGHRYMPDESAAIDERHAE*
Ga0114969_105792241	3300009181	Freshwater Lake	MKLFWSTCPKCVKPFVVGWELRHAGVKLICPFCNHRYLPEQSKAIDDRQTG*
Ga0105259_10011083	3300009597	Soil	MSGGMRLWWSTCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHAD*
Ga0105347_10157362	3300009609	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHAD*
Ga0131077_101431653	3300009873	Wastewater	MRLWWSTCPKCKKEFVVAWELRHAQYKLICPYCDHRYLPEQSAKIDERHAD*
Ga0126377_102895902	3300010362	Tropical Forest Soil	MRLFWSTCPKCIKAFVVEWALRHAGVKLICPYCRHRYLPDESAAIDERYEP*
Ga0126377_131478172	3300010362	Tropical Forest Soil	MRLFWSTCPKCTKAFVVEWALRHAGRQLICPYCRHRYLPDESKEIDERYEP*
Ga0133913_1000131630	3300010885	Freshwater Lake	MRVFWSTCPKCLKAFVVEWELRHAGVKLICPFCGNRHLPDESAELDERQGG*
Ga0137315_10557502	3300011395	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSARIDERHAD*
Ga0137444_10438542	3300011397	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAHYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0137466_10114652	3300011399	Soil	AMSGGMRLWWSTCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEESAKIDERHTE*
Ga0137356_10807801	3300011402	Soil	TCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEESAKIDERHTE*
Ga0137340_10654692	3300011405	Soil	MRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHADG*
Ga0137454_10328271	3300011406	Soil	RGRGEGRCAMSGMRLWWSTCPKCKKDFVVAWELRHAKYKLICPFCDHRYLPEQSAKIDERHAD*
Ga0137454_10532002	3300011406	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEESAKIDERHTE*
Ga0137450_10014484	3300011407	Soil	MRLWWSTCPKCKKEFVVAWELRHAHYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0137323_10073201	3300011409	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKID
Ga0137440_10661492	3300011410	Soil	MSGGMRLWWSTCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0137440_11052582	3300011410	Soil	MSGGMRLWWSTCPKCLKDFVVAWELRHAKYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0137325_11231522	3300011415	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAKYKLICPFCDYRYLPEESAKIDERHSD*
Ga0137446_10291872	3300011419	Soil	MRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0137441_11448882	3300011425	Soil	RLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHAD*
Ga0137456_11421122	3300011428	Soil	MRLWWSTCPKCLKAFVVAWELRHAKYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0137456_11600592	3300011428	Soil	MSGGMRLWWSTCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEESAKIDERHTE*
Ga0137456_11848661	3300011428	Soil	CAMSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0137464_12284171	3300011434	Soil	MRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHAD*
Ga0137451_10001023	3300011438	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0137451_10474442	3300011438	Soil	MSGMRLFWSTCPKCMKAFVVAWELRHAKHKLICPHCGHRYLPDQSAAIDERHVD*
Ga0137437_13133262	3300011442	Soil	MSGGMRLWWSTCPKCKKDFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHAD*
Ga0137427_101007652	3300011445	Soil	CPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0137427_104198762	3300011445	Soil	MSGGMRLWWSTCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEESAKIDERHAD*
Ga0137461_10140233	3300012040	Soil	MSGGMRLWWSTCPKCLKAFVVAWELRHAKYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0137461_11245792	3300012040	Soil	MRLFWSTCPKCIKAFVVEWALRHAGRQLICPYCRHRYLPDESAAIDERYETQG*
Ga0137461_11876242	3300012040	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDVRHAD*
Ga0137347_10604982	3300012152	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHADG*
Ga0137355_10364471	3300012163	Soil	MRLWWSTCPKCKKDFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHAD*
Ga0137447_10299242	3300012226	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAAIDERHTE*
Ga0137435_10417402	3300012232	Soil	MRLWWSTCPKCKKDFVVAWELRHAQYKLICPFCDHRYLPEESAKIDERHAD*
Ga0137435_12086041	3300012232	Soil	MRLFWSTCPKCIKAFVVEWALRHAGRQLICPFCRHRYLPDESAAIDDRYETQG*
Ga0137339_10075752	3300012673	Soil	MSGGMRLWWSTCPKCLKDFVVAWELRHAKYKLICPFCDHRYLPEQSAAIDERHTE*
Ga0075351_11867752	3300014318	Natural And Restored Wetlands	AMTGMRLWWSTCPKCLKAFVVAWELRHAKYKLICPFCGPRYPPDQSAAIDERHAD*
Ga0075351_11885952	3300014318	Natural And Restored Wetlands	MSGGMRLWWSTCPKCLKAFVVAWELRHAKYKLICPFCDHRYLPEQSAKIDERHSD*
Ga0180061_10037882	3300014861	Soil	MRLWWSTCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHTE*
Ga0180060_10015593	3300014863	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAHYKLICPFCDHRYLPEQSAKIDERHAD*
Ga0180078_10317232	3300014865	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDE
Ga0180082_11199372	3300014880	Soil	MSGGMRLWWSTCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEQSARIDERHAD*
Ga0180071_10003653	3300015249	Soil	MRLWWSTCPKCLKDFVVAWELRHAKYKLICPFCDHRYLPEQSAK
Ga0180075_10969222	3300015252	Soil	MRLWWSTCPKCLKDFVVAWELRHAKYKLICPFCDHRYLPEQSAAIDERHTE*
Ga0180081_10035402	3300015253	Soil	MSGGMRLWWSTCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHADG*
Ga0184616_103360792	3300018055	Groundwater Sediment	MSGGMRLWWSTCPKCLKDFVVAWELRHAKYKLICPFCDHRYLPEQSAKIDERHTE
Ga0184631_101578512	3300018070	Groundwater Sediment	MSGGMRLWWSTCPKCLKAFVVAWELRHAKYKLICPFCDHRYLPEQSAKIDERHTE
Ga0184628_100012279	3300018083	Groundwater Sediment	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHTE
Ga0184628_100067683	3300018083	Groundwater Sediment	MSGGMRLWWSTCPKCKKDFVVAWELRHAQYKLICPFCDHRYLPEESAKIDERHAD
Ga0190270_130342822	3300018469	Soil	MSGGMRLWWSTCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEE
Ga0180119_13028591	3300019228	Groundwater Sediment	RRMARPREGRCAMSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHTE
Ga0180117_13877541	3300019248	Groundwater Sediment	MSGGMRLWWSTCPKCRKEFVVAWELRHAQYKLICPFCDHRYLPEQSARIDERHAD
Ga0184648_11286811	3300019249	Groundwater Sediment	LWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHTE
Ga0194060_102351481	3300021602	Anoxic Zone Freshwater	MTKIFASTCPKCKKSFVVEWELLHAGHKLICPFCRNRYLPEESAAIDERGQE
Ga0224500_103605362	3300022213	Sediment	MSGGMRLWWSTCPKCLKAFVVAWELRHAKYKLICPFCDHRYLPEQSAKIDERHSE
Ga0224505_101270622	3300022214	Sediment	MSGGMRLWWSTCPKCLKAFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHSE
Ga0209320_101954722	3300025155	Soil	MTGMRLFWSTCPKCLKAFVVAWELRHAKRKLICPHCGHRYLPEQSAAIDERHAE
Ga0209619_100016811	3300025159	Soil	MTGMRLFWSTCPKCLKAFVVAWELRHSKRKLICPHCGHRYLPDQSAAIDE
Ga0209109_100014232	3300025160	Soil	MTGMRLFWSTCPKCMKAFVVAWELRHAKRKLICPHCGHRYLPEQSAAIDERHAE
Ga0209108_103403442	3300025165	Soil	MSGGMRLWWSTCPKCLKAFVVAWELRHTKRKLICPFCDHRYLPEQSAKIDERHAD
Ga0209640_101223112	3300025324	Soil	MRLFWSTCPKCLKAFVVEWALRHAGRQLICPYCSNRYLPDESAAIDDRYAE
Ga0209640_107053251	3300025324	Soil	STCPKCMKAFVVAWELRHAKRKLICPHCGHRYLPEQSAAIDERHAE
Ga0209640_107067161	3300025324	Soil	STCPKCMKAFVVAWELRHAKRKLICPHCGHRYLPDQSAAIDERHAD
Ga0210135_10427891	3300025954	Natural And Restored Wetlands	RQRRCAMTGMRLWWSTCPKCLKAFVVAWELRHAKYKLICPFCGHRYPPDQSAAIDERHAD
Ga0210071_10058492	3300025955	Natural And Restored Wetlands	MTGMRLWWSTCPKCLKAFVVAWELRHAKYKLICPFCGHRYPPDQSAAIDERHAD
Ga0210105_10398472	3300025966	Natural And Restored Wetlands	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPYSDHRYLPEQSAKIDERHAD
Ga0210117_10859792	3300025985	Natural And Restored Wetlands	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEESAKIDERHAD
Ga0208320_10009643	3300027362	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHAD
Ga0208185_10055121	3300027533	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQS
Ga0209799_11417822	3300027654	Tropical Forest Soil	MRLFWSTCPKCIKAFVVEWALRHAGRQLICPFCKHRYLPEESAAIDDRYES
Ga0207428_107301412	3300027907	Populus Rhizosphere	MRLFWSTCPGCQKAFVVAWELRDAGRQLICPFCANRYLPDESLALDERWNER
Ga0307281_100115164	3300028803	Soil	MSGMRLFWSTCPKCMKAFVVAWELRHAKHKLICPHCGHRYLPDQSAAIDERHVD
Ga0247824_100233503	3300028809	Soil	MSGGMRLWWSTCPKCRKEFVVAWELRHAKYKLICPYCDHRYLPDESARIDERHTD
Ga0247825_100877822	3300028812	Soil	MRLFWSTCPKCMKAFVVEWALRHKGLKLICPYCGNRYLPDDSAAIDDGTTSSLKSH
Ga0307468_1017778162	3300031740	Hardwood Forest Soil	MDRIFTSTCPKCKKSFFVAWALRHAGVKLICPFCGNKHLPEESDAIDEREA
Ga0307412_112567052	3300031911	Rhizosphere	MRLFWSTCPKCEGAFVVGWELRHAGLQLRCPFCEHRYLPDESLALDERANER
Ga0326597_100234617	3300031965	Soil	MKLFWSTCPKCMKPFVVEWALRHAGLKLICPFCGNRYLPEESAKIDDGESGGRTHMG
Ga0326597_100268725	3300031965	Soil	MSGGMRLWWSTCPKCLKAFVVAWELRYAQYKLICPFCDHRYLPEQSAKIDERHAD
Ga0315910_113099751	3300032144	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAKYKLICPYCDHRYLPEESAKIDERHTE
Ga0335084_119084511	3300033004	Soil	MSGGMRLWWSTCPKCKKEFVVAWELRHAQYKLICPFCDHRYLPEQSAKIDERHA
Ga0334722_102186732	3300033233	Sediment	MSGGMRLWWSTCPKCQKAFVVAWELRHAKYKLICPFCDHRYLPEQSAKIDERHAD
Ga0247829_108191922	3300033550	Soil	MTGMRIFWSTCPKCMKKFVVAWELRHSKYKLICPFCGHRYMPDESAAIDERHAE
Ga0364924_140270_425_565	3300033811	Sediment	MSGGMRLWWSTCPKCKKDFVVAWELRHAKYKLICPFCDHRYLPEQSA
Ga0364924_156957_8_163	3300033811	Sediment	MRLWWSTCPKCKKDFVVAWELRHAKYKLICPFCDHRYLPDESAAIDERHAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082310

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences