Metagenome / Metatranscriptome Family F082285

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082285
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	70 residues
Representative Sequence	AFMIRLHVWTIVTDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGCSQECAVLFGQFGNEKRFFVMAIT
Number of Associated Samples	75
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.65 %
% of genes near scaffold ends (potentially truncated)	88.50 %
% of genes from short scaffolds (< 2000 bps)	88.50 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.717 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.938 % of family members)
Environment Ontology (ENVO)	Unclassified (64.602 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.097 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 70.00% Coil/Unstructured: 30.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00300	His_Phos_1	37.17
PF01794	Ferric_reduct	3.54
PF04392	ABC_sub_bind	1.77
PF13545	HTH_Crp_2	0.88
PF04412	AcnX	0.88
PF00296	Bac_luciferase	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.77
COG1679	Mevalonate 5-phosphate dehydratase subunit 1, aconitase superfamily (modified mevalonate pathway)	Lipid transport and metabolism [I]	0.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.72 %
Unclassified	root	N/A	36.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.72 %
Unclassified	root	N/A	36.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.72 %
Unclassified	root	N/A	36.28 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.41 %
Unclassified	root	N/A	36.28 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	58.41 %
Unclassified	root	N/A	36.28 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	36.28 %
Unclassified	root	N/A	36.28 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.16 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.28 %
Unclassified	root	N/A	36.28 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	13.27 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.28 %
Unclassified	root	N/A	36.28 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13.27 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.28 %
Unclassified	root	N/A	36.28 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	7.08 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.77 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.28 %
Unclassified	root	N/A	36.28 %
Bradyrhizobium sp. CCGUVB23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	7.08 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.77 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1066333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10067274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10104650	Not Available	596	Open in IMG/M
3300004267\|Ga0066396_10038047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729	Open in IMG/M
3300005167\|Ga0066672_10448337	Not Available	843	Open in IMG/M
3300005187\|Ga0066675_10115187	All Organisms → cellular organisms → Bacteria	1798	Open in IMG/M
3300005332\|Ga0066388_106345925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300005332\|Ga0066388_106387685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	594	Open in IMG/M
3300005363\|Ga0008090_15742465	Not Available	591	Open in IMG/M
3300005445\|Ga0070708_102159607	Not Available	515	Open in IMG/M
3300005457\|Ga0070662_100768520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	818	Open in IMG/M
3300005467\|Ga0070706_100304641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1486	Open in IMG/M
3300005713\|Ga0066905_100363841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1160	Open in IMG/M
3300005713\|Ga0066905_100492494	Not Available	1017	Open in IMG/M
3300005713\|Ga0066905_101231222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	670	Open in IMG/M
3300005764\|Ga0066903_101865483	Not Available	1150	Open in IMG/M
3300005764\|Ga0066903_102642395	Not Available	973	Open in IMG/M
3300005764\|Ga0066903_106756714	Not Available	596	Open in IMG/M
3300006031\|Ga0066651_10559403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300006034\|Ga0066656_11039949	Not Available	526	Open in IMG/M
3300006852\|Ga0075433_11332053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300010047\|Ga0126382_10224443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1356	Open in IMG/M
3300010047\|Ga0126382_10692824	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300010358\|Ga0126370_10469650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1054	Open in IMG/M
3300010358\|Ga0126370_12661309	Not Available	501	Open in IMG/M
3300010360\|Ga0126372_11254515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	768	Open in IMG/M
3300010376\|Ga0126381_100253623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2385	Open in IMG/M
3300010376\|Ga0126381_102343716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	766	Open in IMG/M
3300012202\|Ga0137363_10264075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1403	Open in IMG/M
3300012211\|Ga0137377_10791834	Not Available	881	Open in IMG/M
3300012948\|Ga0126375_10386084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1007	Open in IMG/M
3300012948\|Ga0126375_11226083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300012960\|Ga0164301_11049807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300012986\|Ga0164304_11518587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300013306\|Ga0163162_10791427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1066	Open in IMG/M
3300014968\|Ga0157379_12053781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300016270\|Ga0182036_10693881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	823	Open in IMG/M
3300016270\|Ga0182036_11382856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
3300016270\|Ga0182036_11484481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300016294\|Ga0182041_10590244	Not Available	975	Open in IMG/M
3300016294\|Ga0182041_10866765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	810	Open in IMG/M
3300016294\|Ga0182041_11402991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	641	Open in IMG/M
3300016294\|Ga0182041_11732855	Not Available	578	Open in IMG/M
3300016341\|Ga0182035_10819119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	818	Open in IMG/M
3300016341\|Ga0182035_12115148	Not Available	511	Open in IMG/M
3300016357\|Ga0182032_11693679	Not Available	551	Open in IMG/M
3300016371\|Ga0182034_11378116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	616	Open in IMG/M
3300016387\|Ga0182040_10902714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300016387\|Ga0182040_11517129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	569	Open in IMG/M
3300016387\|Ga0182040_11886651	Not Available	512	Open in IMG/M
3300016404\|Ga0182037_10287755	Not Available	1315	Open in IMG/M
3300016445\|Ga0182038_11877784	Not Available	541	Open in IMG/M
3300016445\|Ga0182038_11996704	Not Available	525	Open in IMG/M
3300021444\|Ga0213878_10220447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	801	Open in IMG/M
3300027874\|Ga0209465_10094324	Not Available	1465	Open in IMG/M
3300027874\|Ga0209465_10393475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300028875\|Ga0307289_10356999	Not Available	601	Open in IMG/M
3300031543\|Ga0318516_10002729	All Organisms → cellular organisms → Bacteria	7418	Open in IMG/M
3300031545\|Ga0318541_10088999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1643	Open in IMG/M
3300031545\|Ga0318541_10287593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	915	Open in IMG/M
3300031561\|Ga0318528_10052373	All Organisms → cellular organisms → Bacteria	2067	Open in IMG/M
3300031561\|Ga0318528_10259486	Not Available	932	Open in IMG/M
3300031561\|Ga0318528_10654387	Not Available	563	Open in IMG/M
3300031573\|Ga0310915_10238445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1278	Open in IMG/M
3300031573\|Ga0310915_10283866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1168	Open in IMG/M
3300031640\|Ga0318555_10329727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	826	Open in IMG/M
3300031679\|Ga0318561_10044163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2208	Open in IMG/M
3300031681\|Ga0318572_10391136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	826	Open in IMG/M
3300031713\|Ga0318496_10030317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2731	Open in IMG/M
3300031724\|Ga0318500_10376404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300031744\|Ga0306918_11406964	Not Available	534	Open in IMG/M
3300031747\|Ga0318502_10309271	Not Available	930	Open in IMG/M
3300031768\|Ga0318509_10693562	Not Available	565	Open in IMG/M
3300031771\|Ga0318546_10366010	Not Available	1004	Open in IMG/M
3300031771\|Ga0318546_10719558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300031781\|Ga0318547_10376295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	869	Open in IMG/M
3300031781\|Ga0318547_10618375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	672	Open in IMG/M
3300031794\|Ga0318503_10246249	Not Available	580	Open in IMG/M
3300031819\|Ga0318568_11061188	Not Available	500	Open in IMG/M
3300031821\|Ga0318567_10518479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300031833\|Ga0310917_10233577	Not Available	1235	Open in IMG/M
3300031833\|Ga0310917_11071737	Not Available	538	Open in IMG/M
3300031879\|Ga0306919_10054221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2668	Open in IMG/M
3300031879\|Ga0306919_11421730	Not Available	523	Open in IMG/M
3300031890\|Ga0306925_10294789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1745	Open in IMG/M
3300031890\|Ga0306925_10643265	Not Available	1115	Open in IMG/M
3300031890\|Ga0306925_10874275	Not Available	926	Open in IMG/M
3300031910\|Ga0306923_10428297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1503	Open in IMG/M
3300031910\|Ga0306923_12109019	Not Available	568	Open in IMG/M
3300031941\|Ga0310912_10062313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2658	Open in IMG/M
3300031942\|Ga0310916_10652129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	892	Open in IMG/M
3300031942\|Ga0310916_11349524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	585	Open in IMG/M
3300031942\|Ga0310916_11693554	Not Available	511	Open in IMG/M
3300031946\|Ga0310910_10250706	Not Available	1384	Open in IMG/M
3300031946\|Ga0310910_11123314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	611	Open in IMG/M
3300031954\|Ga0306926_10180752	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2616	Open in IMG/M
3300031981\|Ga0318531_10489114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	557	Open in IMG/M
3300032039\|Ga0318559_10035366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2021	Open in IMG/M
3300032039\|Ga0318559_10205493	Not Available	906	Open in IMG/M
3300032041\|Ga0318549_10020946	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
3300032042\|Ga0318545_10000737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7605	Open in IMG/M
3300032051\|Ga0318532_10154065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	816	Open in IMG/M
3300032052\|Ga0318506_10082421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1352	Open in IMG/M
3300032052\|Ga0318506_10422527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300032052\|Ga0318506_10535801	Not Available	518	Open in IMG/M
3300032055\|Ga0318575_10692817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	515	Open in IMG/M
3300032059\|Ga0318533_10618916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	794	Open in IMG/M
3300032076\|Ga0306924_10122224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2962	Open in IMG/M
3300032076\|Ga0306924_11763639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	646	Open in IMG/M
3300032090\|Ga0318518_10122396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1311	Open in IMG/M
3300032094\|Ga0318540_10001332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7971	Open in IMG/M
3300032261\|Ga0306920_103807544	Not Available	551	Open in IMG/M
3300033289\|Ga0310914_11808224	Not Available	515	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.46%
Host-Associated	Host-Associated	3.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.46%
Plants	Host-Associated → Plants	3.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.96%
Loam	Environmental → Terrestrial → Soil → Loam	11.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	67.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10663331	3300000655	Forest Soil	AFMIRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHRVAAYSGQSGCSQEYAVLFAQFGNEKRFFVMAIT*
AF_2010_repII_A001DRAFT_100672741	3300000793	Forest Soil	FMIRLHVWTIVTDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGCSQECAVLFGQFDNEKRFFVMAIT*
AF_2010_repII_A001DRAFT_101046501	3300000793	Forest Soil	FMIRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHRVAAYSGQSGCSQEYAVLFAQFGNEKRFFVMAIT*
Ga0066396_100380472	3300004267	Tropical Forest Soil	LCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFVQFGNEKRFFVMAIT*
Ga0066672_104483372	3300005167	Soil	MIRLHVWAIVTDLCLSAGADWPLPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT*
Ga0066675_101151872	3300005187	Soil	MIRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECPVLFAQFGNEKRFFVMAIT*
Ga0066388_1063459251	3300005332	Tropical Forest Soil	IRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGPSGCSQECAVLFAQFGNKKRFFVMAIT*
Ga0066388_1063876853	3300005332	Tropical Forest Soil	FMIRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAALFAQFGNEKRFFVMAIT*
Ga0008090_157424651	3300005363	Tropical Rainforest Soil	IRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHRVAAYSGQSGCSQEYAVLFAQFGNEKRFFVMAIT*
Ga0070708_1021596071	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	ISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT*
Ga0070662_1007685202	3300005457	Corn Rhizosphere	MIRLHVWAIVTDLCLSAGADWPLPAVVRRLLRLHQVAAYSGQSGCSQECAVLFARFGNEKRFFVMAI
Ga0070706_1003046413	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MIRLHVWTIVTDLCMSAGADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAALFAQFGNEKRFSVMAIT*
Ga0066905_1003638413	3300005713	Tropical Forest Soil	MIHLHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGYEKRFFVMAIT*
Ga0066905_1004924942	3300005713	Tropical Forest Soil	NARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVRRLPRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT*
Ga0066905_1012312222	3300005713	Tropical Forest Soil	SAFMIRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAVIFAQFGNEKRFFVMAIT*
Ga0066903_1018654832	3300005764	Tropical Forest Soil	RAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRRLRQHQVAAYSGQSGCSQECAVLFGQFGNEKRFFVMAIT*
Ga0066903_1026423952	3300005764	Tropical Forest Soil	WTIVTDLCISAEADRPAPAVVHRALRLHQVAAYSGQSGCSEECANEKRFFVMVIT*
Ga0066903_1067567143	3300005764	Tropical Forest Soil	GAAISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPVVVHRCLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFLVMAIT*
Ga0066651_105594031	3300006031	Soil	TDLCISAEADRRHLQWVHHPLRLNQVAAYSGQSGCSEECAGLPGQSDNEKRLFVMAIT*
Ga0066656_110399492	3300006034	Soil	ISAFMIRLHVWTIVTDLCISAEADRLAPAVVRRLLRLHHVAAYSGQSGCSQECAVLFAQFGNESAFM*
Ga0075433_113320531	3300006852	Populus Rhizosphere	IRLHVWAIVTDLCLSAGADWPLPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT*
Ga0126382_102244432	3300010047	Tropical Forest Soil	MSAEADWPAPAVVRRLLRLHQVAAYSGQSGCSQECAVIFAQFGNEKRFFVMAIT*
Ga0126382_106928241	3300010047	Tropical Forest Soil	SAFMIRLHVWTIVTDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGSSQECAVLFGQFGNEKRFL*
Ga0126370_104696501	3300010358	Tropical Forest Soil	TIVTDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGSSQECAVLFGQFGNEKRFL*
Ga0126370_126613091	3300010358	Tropical Forest Soil	GAAISVANARAAISAFMIRLHVWTIVTDLCISAEVDRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT*
Ga0126372_112545151	3300010360	Tropical Forest Soil	IVTDLCISAEADRPAPAVVHRRLRLHRVAAYSGQSGCRQECAVVFAQFGNEKRFFVMAIT
Ga0126381_1002536231	3300010376	Tropical Forest Soil	TDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGSSQECAVLFGQFGNEKRFL*
Ga0126381_1023437161	3300010376	Tropical Forest Soil	TDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT*
Ga0137363_102640751	3300012202	Vadose Zone Soil	IVTDLCISAEADRPAPAVVRRLLRLHQVAAYSDQSGCSQECAVLFAQIGNEKRFFVMAIT
Ga0137377_107918342	3300012211	Vadose Zone Soil	MIRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT*
Ga0126375_103860842	3300012948	Tropical Forest Soil	LHVWTIVTDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGSSQECAVLFGQFGNEKRFFVMAIT*
Ga0126375_112260832	3300012948	Tropical Forest Soil	FMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLHQVAAYSGQSGCSEECANRKRFFVMAIT*
Ga0164301_110498071	3300012960	Soil	MIRLHVWAIVTDLCLSAEADWPLPAVVRRLLRLHQVAAYSGQSGYSQECAVLFARFGN
Ga0164304_115185871	3300012986	Soil	MIRLHVWAIVTDLCLSAEADWPLPAVVRRLLRLHQVAAYSGQSGYSQECAVLFARFGNEKRFFVMAITQLARRSPAGMS
Ga0163162_107914272	3300013306	Switchgrass Rhizosphere	MIRLHVWAIVTDLCLSAEADWPLPAVVRRLLRLHQVAAYSGQSGCSQECAVIFVQLGNEKRFFVMAIT*
Ga0157379_120537811	3300014968	Switchgrass Rhizosphere	MIRLHVWAIVTDLCLSAGADWPLPAVVRRLLRLHQVAAYSGQSGYSQECAVLFARFGNEKRFFVMAITQL
Ga0182036_106938812	3300016270	Soil	AISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0182036_113828561	3300016270	Soil	LHVWTIVTDLCISAEADRPAPAVVHRRMRLHQVAAYSGQSGCSQECAVLFREFGNQKRFFVMAIT
Ga0182036_114844811	3300016270	Soil	HVWTIVTDLCISAEADRPAPAVVHRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT
Ga0182041_105902441	3300016294	Soil	RAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT
Ga0182041_108667651	3300016294	Soil	NARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0182041_114029911	3300016294	Soil	ISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRLLRLHRVAAYSGQSGCSQECAVLFAQFDNEKRFFVIAIT
Ga0182041_117328552	3300016294	Soil	RLHVWTIVTDLCISAEADRPAPAVVHRPLRLHQVAAYSGQSGCSEECANRKRFFVMAIT
Ga0182035_108191191	3300016341	Soil	SAFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0182035_121151481	3300016341	Soil	AISAFMIRLHVWTIVTDLCISTEADRPAPAVVHRPLRLDQVAAYSGESGCSEECAVLFGQFGNKKRVFVMAIT
Ga0182032_116936792	3300016357	Soil	NVGAAISVANARAAISAFMIRLHVWTIVTDLCISTEADRPAPAVVHRPLRLDQVAAYSGESGCSEECAVLFGQFGNKKRVFVMAIT
Ga0182034_113781161	3300016371	Soil	SVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRLLRLHRVAAYSGQSGCSQECAVLFAQFDNEKRFFVIAIT
Ga0182040_109027141	3300016387	Soil	IVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0182040_115171292	3300016387	Soil	VANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRLLRLHRVAAYSGQSGCSQECAVLFAQFDNEKRFFVIAIT
Ga0182040_118866512	3300016387	Soil	MIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVFVMAIT
Ga0182037_102877551	3300016404	Soil	RLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0182038_118777841	3300016445	Soil	ISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRLLRLHRVAAYSGQSGCSQECAVLFAQFDNEKRFFVIAIT
Ga0182038_119967041	3300016445	Soil	RGLSECRAAISVANARAAISAFMIRLHVWTIVTDLCISAEADRPTLAAVHRRLRLHQVAAYSGQSGCSQECAVLFAQFGNKKRFFVMAIT
Ga0213878_102204472	3300021444	Bulk Soil	HVWTIVADLCISAEADRPAPAVVHRPLRLHQVAAYSGQSGCSEECANRKRFFVMAIT
Ga0209465_100943244	3300027874	Tropical Forest Soil	AFMIRLQVWTIVTDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGSSQECAVLFGQFGNEKRFFVMAIT
Ga0209465_103934751	3300027874	Tropical Forest Soil	FMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLHQVAAYSGQSGCSEECANRKRFFVMAIT
Ga0307289_103569991	3300028875	Soil	AISVANARAAISAFMIRLHVWTIVTDLCMSAEADRPVLAVVRRLLRLHQVVAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT
Ga0318516_100027295	3300031543	Soil	MIRLHVWTIVTDLCISAEADRPTLAAVHRRLRLHQVAAYSGQSGCSQECAVLFAQFGNKKRFFVMAIT
Ga0318541_100889992	3300031545	Soil	MIRLHVWTIVTDLCISAEADRPAPAVVHRLLRLHRVAAYSGQSGCSQECAVLFAQFDNEKRFFVIAIT
Ga0318541_102875931	3300031545	Soil	ANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0318528_100523731	3300031561	Soil	MIRLHVWTIVTDLCISAEADRRTLAAVHRRLRLHQVAAYSGQSGCSQECAVLFAQFGNKKRFFVMAIT
Ga0318528_102594862	3300031561	Soil	MIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0318528_106543871	3300031561	Soil	LHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT
Ga0310915_102384453	3300031573	Soil	MIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0310915_102838662	3300031573	Soil	MSAGADRSAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT
Ga0318555_103297272	3300031640	Soil	IVTDLCISAEADRPTLAAVHRRLRLHQVAAYSGQSGCSQECAVLFAQFGNKKRFFVMAIT
Ga0318561_100441632	3300031679	Soil	MIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLHQVAAYSGQNGCSEECANQKRFFVMAI
Ga0318572_103911361	3300031681	Soil	AAISVANARAAISVFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0318496_100303175	3300031713	Soil	MIRLHVWTIVTDLRISAEADRPALAAVHRRLRLHQVAAYSGQSGCSQECAVLFAQFGNKKRFFVMAIT
Ga0318500_103764042	3300031724	Soil	ISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0306918_114069642	3300031744	Soil	FMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0318502_103092712	3300031747	Soil	ARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0318509_106935621	3300031768	Soil	VANARAAISVFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0318546_103660102	3300031771	Soil	ISTEADRPAPAVVHRPLRLDQVAAYSGESGCSEECAVLFGQFGNKKRVFVMAIT
Ga0318546_107195581	3300031771	Soil	AISAFMIRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT
Ga0318547_103762951	3300031781	Soil	AFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0318547_106183752	3300031781	Soil	SAFRIRRHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0318503_102462492	3300031794	Soil	VGAAISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0318568_110611882	3300031819	Soil	ANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0318567_105184792	3300031821	Soil	NVGAAISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0310917_102335773	3300031833	Soil	ISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0310917_110717371	3300031833	Soil	ISVFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0306919_100542211	3300031879	Soil	AISVANARAAISAFMIRLHVWTIVTDLCISAEADRPTLAAVHRRLRLHQVAAYSGQSGCSQECAVLFAQFGNKKRFFVMAIT
Ga0306919_114217301	3300031879	Soil	NVGAAISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGCSQECAVLFGQFGNEKRFYVMAIT
Ga0306925_102947894	3300031890	Soil	NARAAISAFMIRLHVWTIVTDLCMSAGADRSAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFSVMAIT
Ga0306925_106432651	3300031890	Soil	NARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0306925_108742752	3300031890	Soil	ISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0306923_104282973	3300031910	Soil	RAAISAFMIRLHVWTIVTDLCMSAGADRSAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFSVMAIT
Ga0306923_121090191	3300031910	Soil	VANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0310912_100623133	3300031941	Soil	ISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0310916_106521292	3300031942	Soil	GAAISVANARAAISVFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0310916_113495242	3300031942	Soil	SAFMIRLHVWTIVTDLCISAEADRPAPAVVHRLLRLHRVAAYSGQSGCSQECAVLFAQFDNEKRFFVIAIT
Ga0310916_116935541	3300031942	Soil	IVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0310910_102507063	3300031946	Soil	GAAISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0310910_111233141	3300031946	Soil	AAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRLLRLHRVAAYSGQSGCSQECAVLFAQFDNEKRFFVIAIT
Ga0306926_101807527	3300031954	Soil	VANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFFVMAIT
Ga0318531_104891142	3300031981	Soil	AISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRLLRLHRVAAYSGQSGCSQECAVLFAQFDNEKRFFVIAIT
Ga0318559_100353661	3300032039	Soil	VGAAISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLHQVAAYSGQNGCSEECANQKRFFVMAIT
Ga0318559_102054932	3300032039	Soil	DLCISAEVDRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0318549_100209461	3300032041	Soil	SAFMIRLHVWTIVTDLCISAEADRPTLAAVHRRLRLHQVAAYSGQSGCSQECAVLFAQFGNKKRFFVMAIT
Ga0318545_100007371	3300032042	Soil	AFMIRLHVWTIVTDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGCSQECAVLFAQFGNKKRFFVMAIT
Ga0318532_101540652	3300032051	Soil	TEADRPAPAVVHRPLRLDQVAAYSGESGCSEECAVLFGQFGNKKRVFVMAIT
Ga0318506_100824214	3300032052	Soil	AFMIRLHVWTIVTDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGCSQECAVLFGQFGNEKRFFVMAIT
Ga0318506_104225272	3300032052	Soil	ISAEADRPAPAAVHRPLRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0318506_105358011	3300032052	Soil	ISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLHQVAAYSGQSGCSEECANRKRFFVMAIT
Ga0318575_106928172	3300032055	Soil	VWTIVTDLCISAEADRPAPAVVHRLLRLHRVAAYSGQSGCSQECAVLFAQFDNEKRFFVIAIT
Ga0318533_106189162	3300032059	Soil	SVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRFPRLHQVAAYSGQSGCSQGFAVLFAEFGNEKRFFVMAIT
Ga0306924_101222243	3300032076	Soil	SAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0306924_117636392	3300032076	Soil	AISVANARAAISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRLLRLHRVAAYSGQSGCSQECAVLFAQFDNEKRFFVIAIT
Ga0318518_101223961	3300032090	Soil	MSAGADRSAPAVVRRLLRLHQVAAYSGQSGCSQECAVLFAQFGNEKRFSVMA
Ga0318540_100013321	3300032094	Soil	VGAAISVANARAAISAFMIRLHVWTIVTDLCISAEADRPTLAAVHRRLRLHQVAAYSGQSGCSQECAVLFAQFGNKKRFFVMAIT
Ga0306920_1038075441	3300032261	Soil	AISAFMIRLHVWTIVTDLCISAEADRPAPAVVHRPLRLDQVAAYSGQSGCSEECAVLFGQFGNKKRVLVMAIT
Ga0310914_118082241	3300033289	Soil	HVWTIVTDLCISAEADRPAPAVVHRRLRLHQVAAYSGQSGCSQECAVLFGQFGNEKRFFVMAIT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082285

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences