Metagenome / Metatranscriptome Family F082268

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082268
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	49 residues
Representative Sequence	MRKIPNSSRRLDEHISRALNKIKKPSTAEEITELLNRDLEPEDRPFQT
Number of Associated Samples	97
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.59 %
% of genes near scaffold ends (potentially truncated)	86.73 %
% of genes from short scaffolds (< 2000 bps)	89.38 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.920 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (18.584 % of family members)
Environment Ontology (ENVO)	Unclassified (38.938 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.938 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.53% β-sheet: 0.00% Coil/Unstructured: 64.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13456	RVT_3	3.54
PF01420	Methylase_S	1.77
PF05231	MASE1	0.88
PF13676	TIR_2	0.88
PF13307	Helicase_C_2	0.88
PF04366	Ysc84	0.88
PF11528	DUF3224	0.88
PF01902	Diphthami_syn_2	0.88
PF14559	TPR_19	0.88
PF01527	HTH_Tnp_1	0.88
PF13020	NOV_C	0.88
PF00589	Phage_integrase	0.88
PF00485	PRK	0.88
PF13517	FG-GAP_3	0.88
PF04542	Sigma70_r2	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0732	Restriction endonuclease S subunit	Defense mechanisms [V]	1.77
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.88
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.88
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.88
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.88
COG2102	Diphthamide synthase (EF-2-diphthine--ammonia ligase)	Translation, ribosomal structure and biogenesis [J]	0.88
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.88
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.88
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.88
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.92 %
Unclassified	root	N/A	7.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.92 %
Unclassified	root	N/A	7.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.92 %
Unclassified	root	N/A	7.08 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.07 %
Unclassified	root	N/A	7.08 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	58.41 %
Unclassified	root	N/A	7.08 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.41 %
Unclassified	root	N/A	7.08 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.88 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.41 %
Unclassified	root	N/A	7.08 %
Phycisphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales	0.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.41 %
Unclassified	root	N/A	7.08 %
Phycisphaeraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae	0.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.41 %
Unclassified	root	N/A	7.08 %
Mucisphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Mucisphaera	0.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	58.41 %
Unclassified	root	N/A	7.08 %
Mucisphaera calidilacus	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Mucisphaera → Mucisphaera calidilacus	0.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003370\|JGI26337J50220_1021074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300004092\|Ga0062389_104806227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300004152\|Ga0062386_100933013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300004475\|Ga0068969_1039229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300004631\|Ga0058899_12305548	All Organisms → cellular organisms → Bacteria	2105	Open in IMG/M
3300005162\|Ga0066814_10013948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1033	Open in IMG/M
3300005180\|Ga0066685_10078900	All Organisms → cellular organisms → Bacteria	2169	Open in IMG/M
3300005458\|Ga0070681_10580688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1035	Open in IMG/M
3300005467\|Ga0070706_102008570	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300005538\|Ga0070731_10784080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300006028\|Ga0070717_10964306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300006046\|Ga0066652_101942574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300006864\|Ga0066797_1278091	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300009012\|Ga0066710_104156481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300009012\|Ga0066710_104428407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300009088\|Ga0099830_10403315	All Organisms → cellular organisms → Bacteria → Acidobacteria	1106	Open in IMG/M
3300009088\|Ga0099830_10545039	All Organisms → cellular organisms → Bacteria → Acidobacteria	949	Open in IMG/M
3300009088\|Ga0099830_11773550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300009143\|Ga0099792_10000031	All Organisms → cellular organisms → Bacteria → Acidobacteria	56261	Open in IMG/M
3300009518\|Ga0116128_1203658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300009519\|Ga0116108_1115977	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300009523\|Ga0116221_1186850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300009640\|Ga0116126_1181859	All Organisms → cellular organisms → Bacteria → Acidobacteria	686	Open in IMG/M
3300009643\|Ga0116110_1013219	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3347	Open in IMG/M
3300009645\|Ga0116106_1047037	Not Available	1446	Open in IMG/M
3300009645\|Ga0116106_1246896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300009665\|Ga0116135_1436571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300009700\|Ga0116217_10708364	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300009839\|Ga0116223_10342197	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Mucisphaera → Mucisphaera calidilacus	887	Open in IMG/M
3300010343\|Ga0074044_10465391	All Organisms → cellular organisms → Bacteria → Acidobacteria	827	Open in IMG/M
3300010379\|Ga0136449_100399209	All Organisms → cellular organisms → Bacteria → Proteobacteria	2441	Open in IMG/M
3300010379\|Ga0136449_103909959	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300011271\|Ga0137393_10649330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	904	Open in IMG/M
3300012096\|Ga0137389_11418978	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300012189\|Ga0137388_11271594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300012203\|Ga0137399_10672899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300012350\|Ga0137372_10878838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300012923\|Ga0137359_11034953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300014158\|Ga0181521_10318553	All Organisms → cellular organisms → Bacteria → Acidobacteria	791	Open in IMG/M
3300014158\|Ga0181521_10617285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300014165\|Ga0181523_10369265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300016750\|Ga0181505_11012019	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300017823\|Ga0187818_10177145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	930	Open in IMG/M
3300017933\|Ga0187801_10277050	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300017935\|Ga0187848_10143271	Not Available	1056	Open in IMG/M
3300017937\|Ga0187809_10036172	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300017938\|Ga0187854_10480925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300017955\|Ga0187817_10640642	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300017955\|Ga0187817_11120181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300018004\|Ga0187865_1297387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300018006\|Ga0187804_10292474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300018006\|Ga0187804_10325961	All Organisms → cellular organisms → Bacteria → Acidobacteria	672	Open in IMG/M
3300018007\|Ga0187805_10359982	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300018008\|Ga0187888_1304718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300018009\|Ga0187884_10183975	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	867	Open in IMG/M
3300018014\|Ga0187860_1360633	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300018015\|Ga0187866_1163525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
3300018016\|Ga0187880_1069462	All Organisms → cellular organisms → Bacteria → Acidobacteria	1813	Open in IMG/M
3300018017\|Ga0187872_10141400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1160	Open in IMG/M
3300018017\|Ga0187872_10227002	All Organisms → cellular organisms → Bacteria → Acidobacteria	848	Open in IMG/M
3300018019\|Ga0187874_10383190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300018019\|Ga0187874_10399263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300018022\|Ga0187864_10492719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300018025\|Ga0187885_10253279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300018026\|Ga0187857_10542837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300018030\|Ga0187869_10622907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300018035\|Ga0187875_10648051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300018037\|Ga0187883_10607371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300018040\|Ga0187862_10277375	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1067	Open in IMG/M
3300018047\|Ga0187859_10185358	All Organisms → cellular organisms → Bacteria → Acidobacteria	1108	Open in IMG/M
3300019786\|Ga0182025_1005332	All Organisms → cellular organisms → Bacteria → Acidobacteria	1027	Open in IMG/M
3300019786\|Ga0182025_1019827	All Organisms → cellular organisms → Bacteria → Acidobacteria	1018	Open in IMG/M
3300019787\|Ga0182031_1292520	All Organisms → cellular organisms → Bacteria	1770	Open in IMG/M
3300020580\|Ga0210403_11270444	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300020581\|Ga0210399_10962517	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300020582\|Ga0210395_10188293	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1547	Open in IMG/M
3300020583\|Ga0210401_10001641	All Organisms → cellular organisms → Bacteria	25530	Open in IMG/M
3300021171\|Ga0210405_11071347	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300021171\|Ga0210405_11223969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300021403\|Ga0210397_11026842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300021407\|Ga0210383_10353551	All Organisms → cellular organisms → Bacteria → Acidobacteria	1266	Open in IMG/M
3300021432\|Ga0210384_10136766	All Organisms → cellular organisms → Bacteria	2199	Open in IMG/M
3300021432\|Ga0210384_10139155	Not Available	2179	Open in IMG/M
3300021474\|Ga0210390_11589204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300021560\|Ga0126371_11881604	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300022756\|Ga0222622_11314388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300025432\|Ga0208821_1049282	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300025496\|Ga0208191_1057082	All Organisms → cellular organisms → Bacteria → Acidobacteria	838	Open in IMG/M
3300025500\|Ga0208686_1030709	Not Available	1336	Open in IMG/M
3300026294\|Ga0209839_10106241	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300027641\|Ga0208827_1150263	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300027738\|Ga0208989_10135482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	831	Open in IMG/M
3300027862\|Ga0209701_10261699	All Organisms → cellular organisms → Bacteria → Acidobacteria	1007	Open in IMG/M
3300027862\|Ga0209701_10308432	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300027862\|Ga0209701_10398327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300027903\|Ga0209488_10000613	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	30250	Open in IMG/M
3300027905\|Ga0209415_11097307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300027905\|Ga0209415_11131084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300027908\|Ga0209006_11143687	Not Available	611	Open in IMG/M
3300027911\|Ga0209698_11258776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300028023\|Ga0265357_1020319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300028047\|Ga0209526_10504972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300029817\|Ga0247275_1035959	Not Available	1460	Open in IMG/M
3300030991\|Ga0073994_12064298	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300031057\|Ga0170834_103239795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300031231\|Ga0170824_111753840	All Organisms → cellular organisms → Bacteria → Acidobacteria	998	Open in IMG/M
3300031708\|Ga0310686_100796580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	855	Open in IMG/M
3300032160\|Ga0311301_11867609	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300032898\|Ga0335072_10010214	All Organisms → cellular organisms → Bacteria	13522	Open in IMG/M
3300033433\|Ga0326726_10298019	All Organisms → cellular organisms → Bacteria → Acidobacteria	1512	Open in IMG/M
3300033823\|Ga0334837_069310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.52%
Aquatic	Environmental → Aquatic	41.59%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.75%
Freshwater	Environmental → Aquatic → Freshwater	39.82%
Sediment	Environmental → Aquatic → Sediment	1.77%
Peat	Environmental → Terrestrial → Peat	1.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	39.82%
Loam	Environmental → Terrestrial → Soil → Loam	7.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	23.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.39%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.08%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	18.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.62%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.85%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.54%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004475	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025432	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 (SPAdes)	Environmental	Open in IMG/M
3300025496	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)	Environmental	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028023	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033823	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26337J50220_10210741	3300003370	Bog Forest Soil	MRKIPNSSRRLDGHISRALNQIKKPSTAEEITELLNRDLEPEDRPFQTREVAEWLRNTG
Ga0062389_1048062271	3300004092	Bog Forest Soil	MRKIPNSHRLDAHISRALNKIRKPSTAEEITELLNRDLEPEDRPFQTKEVAEWL
Ga0062386_1009330132	3300004152	Bog Forest Soil	MQQIPNSSRGLDAHISRALNKVRKPSTAEEITELLNRELDSEDRPFQTKEV
Ga0068969_10392291	3300004475	Peatlands Soil	MRKILNSNRRLSEHILRALNKIRKPSTAGEITELLNRDLDLEDRPFQAKDVA
Ga0058899_123055482	3300004631	Forest Soil	MKKVLNSSRRLSEHILTALNKIRKPSTVDEITDLLNRDLDPGDRPFQAKDIAEWLRNAEEQR*
Ga0066814_100139481	3300005162	Soil	MKKTANSNRRLSEHILRALNKIKKPSTAGEITELLNRDLEQGDRAFQEKDVAE*
Ga0066685_100789004	3300005180	Soil	MRKVPNEDRRLDEHVLRALNKIRKPSTSEEITELLNRDLDPGDRPFQTREVA
Ga0070710_114197552	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MGQITNSNSHLNESILRAVNKIRKPSTTQEITELLNRDLGPQDRPFRARDVAVWLRNAEEGV
Ga0070681_105806881	3300005458	Corn Rhizosphere	MRELPNADRRLAEYIRRALNKIKKPSTAEEITELLNRDLGPGDRAFQVR
Ga0070706_1020085703	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIPNSRRGLDEHISRALNKIRKPSTAEEITELLNRDLEPEDRPF
Ga0070731_107840801	3300005538	Surface Soil	MPSLTNANDRLDESIRRALNKAKKPSTAEEITELLNRDLGPGDRPFQ
Ga0070717_109643061	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LIFLELESEMGQIPNSRRRLDEHILRALNKIKRPSTAEEITELLNRDLEPEDRPFQTKEVAEWLR
Ga0066652_1019425741	3300006046	Soil	MRQVPHAKRRLDEHVLRALNKIKKPSTVEEITELLN
Ga0066797_12780911	3300006864	Soil	MKKIPNSRRRPDEHILRALNKIRKPSTAEEITELLNRDLEPEDRPFQTRE
Ga0066710_1041564811	3300009012	Grasslands Soil	MRQVPNANRRLDEHVVRALNKIRKPSTAEEITELLNRDL
Ga0066710_1044284071	3300009012	Grasslands Soil	MRQVPNANRRLDDHVLRALNKIRKPSTAEEITELLNRDLGP
Ga0099830_104033151	3300009088	Vadose Zone Soil	MVEPAMKKILNSSRCLSEHILRALNKIRKPSTAGEITELLNRNLDLEDRP
Ga0099830_105450391	3300009088	Vadose Zone Soil	MRKSPNSRGRLDEHISRALNKIRKPSTAEEITELLNR
Ga0099830_117735502	3300009088	Vadose Zone Soil	MWQIPNSSRRLDEHISRALNKIRKPSTAQEITELLNRDLKPEDRPFQTKEVAEWLR
Ga0099792_1000003130	3300009143	Vadose Zone Soil	MREIANSHRRLGEHISRALNKIRKPSTAEEITELLNRELEPEDRSLGPLVPN*
Ga0116128_12036581	3300009518	Peatland	MKRTPSSNRDLSEHISRALNKIRKPSTAGEITELLNRELDRGDRPFQEGDVAEW
Ga0116108_11159771	3300009519	Peatland	MRQIPSSILRLDAHISRALNTIRKPSTAEEITELLNREL
Ga0116221_11868501	3300009523	Peatlands Soil	MKKIPNSSRCLSDHISRALNKIRKPSTADEITELVNRDLELEDRPFQAKDIAEWL*
Ga0116126_11818591	3300009640	Peatland	MKKIPNSSRRLDEHILRALNKIRKPSTASEITELLNRDLDLDDRPFQAKDVAEWL
Ga0116110_10132194	3300009643	Peatland	MRKIPNSRRLDEHISRALNKIRKPSTAVEITELLNRDLDLEDRPFQAKDVAEWLR
Ga0116106_10470371	3300009645	Peatland	MRQIPSSILRLDAHISRALNTIRKPSTAEEITELLNRELDSEDRP
Ga0116106_12468961	3300009645	Peatland	MKRTPSSNRDLSEHISRALNKIRKPSTAGEITELLNRELDRGDRPFQEGDVAEWLRTTE
Ga0116135_14365712	3300009665	Peatland	VKPAMKKIPNLSRRLSEHISRALNEIRKPSTAGEITEFLNRNLDLGDRPFEAEDVAEWL
Ga0116217_107083642	3300009700	Peatlands Soil	MRKIPNSSRRLDEHISRALNKIRKPSTAEEITELLNRDLEIEDRPFQIKEVG
Ga0116223_103421971	3300009839	Peatlands Soil	MRQVPNANHHLDENILRALNKIKKPGTAEEITELLNRDLG
Ga0074044_104653911	3300010343	Bog Forest Soil	MRKIPNSRRLEEHISRALNQIKKPSTAEEITELLNRDLEPEDRPFQTREVAE
Ga0136449_1003992093	3300010379	Peatlands Soil	MRQVPNANHHLDEHILRALNKIKKPGTAEEITELLNR
Ga0136449_1039099592	3300010379	Peatlands Soil	MGQFFETVKPAMKKIPNPSSRLSEHILRALNKIKKPSTAGEITELLNCDLDREDGPF
Ga0137393_106493301	3300011271	Vadose Zone Soil	MVEPAMKKIPNSNRCLSEHILRALNKIRKPSTAGEITELLNRNLDLE
Ga0137389_114189782	3300012096	Vadose Zone Soil	MVEPAMKKIPDSSRCLSEHILRALNKIRKPSTAGEITELLNRNLDLEDRPFQAKDVAEWLRN
Ga0137388_112715942	3300012189	Vadose Zone Soil	MRKSPNSRRRLDEHISRALNKIRKPSTAEEITELLNRYLEL
Ga0137399_106728993	3300012203	Vadose Zone Soil	MVEPAMKKIPNSSRRLSEHILRALNKIRKPSTAGEITELLNRNLDLDDRPFQANDVA
Ga0137380_103839063	3300012206	Vadose Zone Soil	MVQIPNSKSHLNKNILRALNKIRKPSTAEELTELLNRDLGQGDRPFGTRDVSKWLRNAEESVITLYWLKTRPRR*
Ga0137372_108788381	3300012350	Vadose Zone Soil	MRQVPNANRRLDDHVLRALNKIRKPSTAEEITELLNRD
Ga0137359_110349532	3300012923	Vadose Zone Soil	MREIANSHRRLGEHISRALNKIRKPSTAEEITELLNRELDPADR
Ga0181521_103185531	3300014158	Bog	MRKISNSRRLEEHISRALNKIRKPSTPEEITELLNRDLEPEDRPFQAKEVAE
Ga0181521_106172851	3300014158	Bog	MRQIPSSNLRLDAHISRALNTIRKPSTTEEITELLNRELDSEDRPFETQEVAER
Ga0181523_103692652	3300014165	Bog	MKKVPNSKQRFNDHILKAVNKIKKPSTAGEITELLNRDLECGDRPFQEEDV
Ga0181505_110120193	3300016750	Peatland	MRQIPSSSRRLDAHISRALNTIRKPSTAEEITELLNRELDS
Ga0187818_101771452	3300017823	Freshwater Sediment	MRELPNANRRLDEHIRRALNQIKKPSTAEEITELLNRDLGPGDRPFQA
Ga0187801_102770501	3300017933	Freshwater Sediment	MRKIPNSRRLEEHISRALNKIRKPSTPEEITELLNRDLEPEDRPFQTKEVAERLRNSG
Ga0187848_101432711	3300017935	Peatland	MRQIPNSSRRLDEHIARALNQIRKPSTPEEITELLNRD
Ga0187809_100361721	3300017937	Freshwater Sediment	MKKIPNLGRPLGEHILRALNKIRKPSTAGEITELLNRDLDLEDRPFQATAGYWSSCVR
Ga0187854_104809251	3300017938	Peatland	MRQIPSSILRLDAHISRALNTIRKPSTAEEITELLNR
Ga0187817_106406422	3300017955	Freshwater Sediment	MRKIPNSPRRLDEHISRALNKIRKPSTAEEITELLNRDLEI
Ga0187817_111201812	3300017955	Freshwater Sediment	MKKIPNSSRKLSEHILRALNKIRKPSTAGEITELLNRDLDLEDRPFRVKDIADWL
Ga0187865_12973871	3300018004	Peatland	MRQIPSSSRRLEAHISRALNTIRKPSTAEEITELLNRE
Ga0187804_102924741	3300018006	Freshwater Sediment	LIFLELEPEMGQIPNSRRRLDEHILRALNKIKRPSTAEEITELLNRDLEPEDRPFQTKEVAEWLR
Ga0187804_103259611	3300018006	Freshwater Sediment	MKKIPNSSRRLSEHILRALNQIRKPSTAGEITELLNR
Ga0187805_103599821	3300018007	Freshwater Sediment	MRELANANRRLDEHIRRALNKIKKPSTAEEITELLNRDLGPGDRPFQA
Ga0187888_13047181	3300018008	Peatland	MKKIPNSSRHLGEHILRALNQIRRPSTAGEITELLNRDLDRANSPFQAKDVA
Ga0187884_101839752	3300018009	Peatland	MRQIPSSNLRLDAHISRALNTIRKPSTTEEITELLNRELDSEDRPFETQEVAERLQNS
Ga0187860_13606331	3300018014	Peatland	MKKIPNSSRRLDEHILRALNKIRKPSTASEITELLNRDLDLDDRPFQAK
Ga0187866_11635251	3300018015	Peatland	MKKIPNSNRHLSEHILRALNKIRKPSTAGEITELLNRDLDREDSPFQAKDVAEWLRNT
Ga0187880_10694625	3300018016	Peatland	MKKIPNSSRRLDEHILRALNKIRKPSTASEITELLNRDLDLDDRPFQAKDV
Ga0187872_101414003	3300018017	Peatland	MRKIPNSPRRLDEHISRALNKIRKPSTAEEITELLNRDLEIEDRPFQTKEVAERLRNT
Ga0187872_102270021	3300018017	Peatland	MKKIPNSSRRLDEHILRALNKIRKPSTASEITELLNRDLDL
Ga0187874_103831901	3300018019	Peatland	MKRTPSSNRDLSEHISRALNKIRKPSTAGEITELLNRELDRGDRPFQEGVVAEWLRTTE
Ga0187874_103992632	3300018019	Peatland	MKKIPNSNRRLGEHILRALNQIRKPSTAGEITELLNRDL
Ga0187864_104927192	3300018022	Peatland	MKKIPNSSRCLSEHILRALNQIRKPSTAGEITELLNRDLDREDSPFQAKDVEEWLRNT
Ga0187885_102532792	3300018025	Peatland	MRQIPSSILRLDADISRALNTIRKPSTTEEITELLNR
Ga0187857_105428371	3300018026	Peatland	MKRTPSSNRDLSEHISRALNKIRKPSTAGEITELLNRELDRGDRPFQEGDVAE
Ga0187869_106229071	3300018030	Peatland	MRKISNSRRLEEHISRALNKIRKPSTAEEITELLNRDLEPEDRPFQTKEVAEWLRNIG
Ga0187875_106480512	3300018035	Peatland	MKKIPNSSRRLDEHILRALNKIKRPSTAGEITELLNGDLDREDGPFQAKDVAEWLR
Ga0187883_106073711	3300018037	Peatland	MKKISNSSRRLREHVLRALNEIRKPSTAAEITELLNRNLDLGDQPF
Ga0187862_102773755	3300018040	Peatland	MRQIPNSSRCLDAHISRALNTIRKPSTAEEITELLNRELDSEDRPFQTNEVAERL
Ga0187859_101853581	3300018047	Peatland	MKKISNSNRRLGEHILRALNKIRKHSTAGEITELLNRDLDLEDRPFQAKDVAE
Ga0182025_10053321	3300019786	Permafrost	MKKIPNSSRRLSEHISRALNKIRKPSTVGEITELLNRDLDLEDRWTS
Ga0182025_10198271	3300019786	Permafrost	MKKIPNSSRRLSEHISRALNKIRKPSTVGEITESELLNRDLDLED
Ga0182031_12925202	3300019787	Bog	MKKIPNSSRRLNEHILRALNKIKRPSTSGEITELLNGDLDREDRPFQAKDVASGCETPRTQR
Ga0210403_112704441	3300020580	Soil	MGQFFEAVEPATKMKKIPNSSRRLREHILRALNKIRKPSTAGEITELLNRDLDLEDRP
Ga0210399_109625171	3300020581	Soil	MKKIPNLGRPLGEHILRALNKIRKPSTAGEITELLNRDLDLED
Ga0210395_101882932	3300020582	Soil	VGQFFETVEPAMKKIPDSSRRLSDHVLRALNPMGKPSTAGEITELLNRDLELEDRPF
Ga0210401_1000164130	3300020583	Soil	VGQFFETVEPAMKKIPDSSRRLSDHVLRALNPIRKPSTAGEITELLNRDLELEDRPF
Ga0210405_110713471	3300021171	Soil	VGQFFETVEPAMKKIPDSSRRLSDHVLRALNPIGKPSTAGEITELLNRDLELEDRPF
Ga0210405_112239691	3300021171	Soil	MKKVSNSSRLSEQIVAALNKIRKPSTADEITDLLNRDLDPGDRPFKAKDVAEW
Ga0210397_110268421	3300021403	Soil	MKKIPDSSRRLSDHVLRALNPIRKPSTAGEITKLLNRDLELED
Ga0210383_103535513	3300021407	Soil	MKKIPNLGRPLGEHILRALNKIRKPSTAGEITELL
Ga0210384_101367663	3300021432	Soil	MRKSPNSRRLDERISRALNKIRKPSTAEEITELLNR
Ga0210384_101391551	3300021432	Soil	MRKIPNSSRRLDEHISRALNKIRKPSNAEEITELLNRDLEPEDRPFRAKEV
Ga0210390_115892041	3300021474	Soil	MKKTPNSNRRLSEHISRALNKIKKPSTAGEVTELLNLDLEQG
Ga0126371_118816041	3300021560	Tropical Forest Soil	MNQPANANRLDEHMRRALNKIRKPSTAEEITDVLNRDL
Ga0222622_113143881	3300022756	Groundwater Sediment	MRQVPNTNALDEHIWRALNKIRKPSTAEEITDVLNRDLGPGDP
Ga0208821_10492821	3300025432	Peatland	MKKIPNSNRHLSEHILRALNKIRKPSTAGEITELL
Ga0208191_10570821	3300025496	Peatland	MKKIPNSNRHLSEHILRALNKIRKPSTAGEITELLNRDLDREDSPFQAKDVAEWLR
Ga0208686_10307093	3300025500	Peatland	MRQIPSSILRLDAHISRALNTIRKPSTAEEITELLNRELDSEDRPFETKEVAERLQNSQN
Ga0209839_101062411	3300026294	Soil	MREIPNSRRLDEHISRALNKIKKPSTPEEITELLNRDLEPEDRPFQ
Ga0208827_11502631	3300027641	Peatlands Soil	MKKIPNSNRRLGEHILRALNKIRKPSTAGEITELLNRDLDLEERPF
Ga0208989_101354821	3300027738	Forest Soil	MGKIPNSRRDEHISRALNKIRKPSTAEEITELLNRDLEP
Ga0209701_102616994	3300027862	Vadose Zone Soil	MKKIPNSNRCLSEHILRALNKIRKPSTAGEITELLNRNLD
Ga0209701_103084323	3300027862	Vadose Zone Soil	MKKIPDSSRCLSEHILRALNKIRKPSTAGEITELLNRNLD
Ga0209701_103983271	3300027862	Vadose Zone Soil	MRQIPNSSRRLDEHISRALNKIRKPSTAEEITELLNRDLEP
Ga0209488_1000061328	3300027903	Vadose Zone Soil	MREIANSHRRLGEHISRALNKIRKPSTAEEITELLNRELEPEDRSLGPLVPN
Ga0209415_110973071	3300027905	Peatlands Soil	MRKIPNSNRRLSEHILRALNKIRKPSTAGEITELLNRNLDLEDRPFQAEDVEE
Ga0209415_111310841	3300027905	Peatlands Soil	MRKIPNSSRRLDEHISRALNKIRKPSTAEEITELLNRDLEPEDRPFQTKEVA
Ga0209006_111436871	3300027908	Forest Soil	MKLEMRKIPNSLRLDEHISRALNKIKKPSTVEEITELL
Ga0209698_112587761	3300027911	Watersheds	MKKIPNSTRRLSEHILRALNKIRKPSTAEEITELLNCELDLEERPFQTREVAEWLQN
Ga0265357_10203191	3300028023	Rhizosphere	MKKTPNSNRRLSEHISRALNKIKKPSTAGEVTELLNLDLEQGD
Ga0209526_105049721	3300028047	Forest Soil	MKKIPNSSRRLSEHILRALNKIRKPSTAGEITELLNRNLD
Ga0247275_10359595	3300029817	Soil	MRQIPNSSRCLDAHISRALNTIRKPSTAEEITELLNRELDSEDRPFQTNEVAERLQNSQN
Ga0073994_120642981	3300030991	Soil	MGQFFEAVEPATKMKKIPNSSRRLREHILRALNKIRKPSTAGEITELLNRDLDLEDRPFQEKDV
Ga0170834_1032397951	3300031057	Forest Soil	MRKVPNANHRLDELILRALNKIKKPGTAEEITELLNRDLGPG
Ga0170824_1117538403	3300031231	Forest Soil	MRKIPNSSRRLDEHISRALNKIKKPSTAEEITELLNRDLEPEDRPFQT
Ga0310686_1007965801	3300031708	Soil	MKKIPNSSRRLSEHVLRVLNKIRKPSTPGEITELLNHDLDLGDRPFEAKDIAEWLQKQ
Ga0311301_118676093	3300032160	Peatlands Soil	MKKIPNSSRRLSEHILRALNKIKRPSTAGEITELLNGDLDREDGPFQA
Ga0335072_100102141	3300032898	Soil	MPSLPNANDRLDECMRRALNRIKKPSTAEEITELLNRDLGPGDRP
Ga0326726_102980191	3300033433	Peat Soil	VGQISNSSRSLDEHISRVLNKIRKPSTVEEITDLLNRDLGPGDRTFQAKEVAEWLRN
Ga0334837_069310_1_177	3300033823	Soil	MKKIPNSSRRLNEHILRALNKIKRPSTSGEITELLNGDLDREDRPFQAKDVAEWLRNTE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082268

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences