Metagenome Family F082242

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082242
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	48 residues
Representative Sequence	MATYAVNNAQKLAPADKTFCDLPPAVADALEQEALTTTYPTGAVLF
Number of Associated Samples	99
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.35 %
% of genes near scaffold ends (potentially truncated)	98.23 %
% of genes from short scaffolds (< 2000 bps)	87.61 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.372 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (15.044 % of family members)
Environment Ontology (ENVO)	Unclassified (51.327 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.478 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.57% β-sheet: 0.00% Coil/Unstructured: 82.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00072	Response_reg	23.01
PF02518	HATPase_c	19.47
PF13426	PAS_9	5.31
PF08448	PAS_4	4.42
PF13545	HTH_Crp_2	2.65
PF00121	TIM	2.65
PF13456	RVT_3	2.65
PF09699	Paired_CXXCH_1	0.88
PF14256	YwiC	0.88
PF12811	BaxI_1	0.88
PF00872	Transposase_mut	0.88
PF03992	ABM	0.88
PF02470	MlaD	0.88
PF00512	HisKA	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0149	Triosephosphate isomerase	Carbohydrate transport and metabolism [G]	2.65
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.37 %
Unclassified	root	N/A	33.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.37 %
Unclassified	root	N/A	33.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.37 %
Unclassified	root	N/A	33.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.19 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	26.55 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.31 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.65 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.31 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.65 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	4.42 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.65 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.77 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.88 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.77 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1.77 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.88 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.88 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	1.77 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.88 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.88 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.42 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1.77 %
Micromonospora pattaloongensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora pattaloongensis	0.88 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.88 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001100\|JGI12703J13194_100379	All Organisms → cellular organisms → Bacteria	1787	Open in IMG/M
3300001154\|JGI12636J13339_1012424	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300003219\|JGI26341J46601_10073790	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300003352\|JGI26345J50200_1044043	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	507	Open in IMG/M
3300004082\|Ga0062384_100034188	All Organisms → cellular organisms → Bacteria	2327	Open in IMG/M
3300004152\|Ga0062386_101293700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora pattaloongensis	606	Open in IMG/M
3300005435\|Ga0070714_100591326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1065	Open in IMG/M
3300005541\|Ga0070733_10328506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1013	Open in IMG/M
3300005712\|Ga0070764_10874735	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300005952\|Ga0080026_10116733	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	754	Open in IMG/M
3300006028\|Ga0070717_12011991	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300006041\|Ga0075023_100504087	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006059\|Ga0075017_101370145	Not Available	556	Open in IMG/M
3300006086\|Ga0075019_10866231	All Organisms → cellular organisms → Bacteria → Proteobacteria	578	Open in IMG/M
3300006893\|Ga0073928_11145104	Not Available	525	Open in IMG/M
3300007819\|Ga0104322_110493	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1113	Open in IMG/M
3300009521\|Ga0116222_1419656	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	583	Open in IMG/M
3300009523\|Ga0116221_1142034	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1048	Open in IMG/M
3300009614\|Ga0116104_1122018	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300009617\|Ga0116123_1127821	Not Available	664	Open in IMG/M
3300009624\|Ga0116105_1010626	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300009631\|Ga0116115_1006623	All Organisms → cellular organisms → Bacteria	3818	Open in IMG/M
3300009631\|Ga0116115_1054801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1055	Open in IMG/M
3300009635\|Ga0116117_1105216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300009637\|Ga0116118_1051782	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
3300009641\|Ga0116120_1027860	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2020	Open in IMG/M
3300009643\|Ga0116110_1031924	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1968	Open in IMG/M
3300009643\|Ga0116110_1040602	All Organisms → cellular organisms → Bacteria	1703	Open in IMG/M
3300009644\|Ga0116121_1314946	Not Available	506	Open in IMG/M
3300009645\|Ga0116106_1030868	All Organisms → cellular organisms → Bacteria	1840	Open in IMG/M
3300009683\|Ga0116224_10023152	All Organisms → cellular organisms → Bacteria	3058	Open in IMG/M
3300009683\|Ga0116224_10088802	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300009764\|Ga0116134_1261859	Not Available	596	Open in IMG/M
3300009839\|Ga0116223_10239045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1098	Open in IMG/M
3300009839\|Ga0116223_10482631	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	723	Open in IMG/M
3300009839\|Ga0116223_10754962	Not Available	557	Open in IMG/M
3300010343\|Ga0074044_10096874	Not Available	1987	Open in IMG/M
3300010376\|Ga0126381_101717782	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	906	Open in IMG/M
3300012210\|Ga0137378_10597809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1013	Open in IMG/M
3300014155\|Ga0181524_10521091	Not Available	503	Open in IMG/M
3300014159\|Ga0181530_10031165	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3796	Open in IMG/M
3300014162\|Ga0181538_10400692	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300014162\|Ga0181538_10636207	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300014201\|Ga0181537_11027052	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300014654\|Ga0181525_10012251	All Organisms → cellular organisms → Bacteria	5675	Open in IMG/M
3300017924\|Ga0187820_1198466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300017934\|Ga0187803_10411632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	549	Open in IMG/M
3300017937\|Ga0187809_10366087	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300017972\|Ga0187781_10234874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1296	Open in IMG/M
3300017972\|Ga0187781_10803631	Not Available	683	Open in IMG/M
3300017975\|Ga0187782_11349517	Not Available	560	Open in IMG/M
3300018002\|Ga0187868_1291941	Not Available	540	Open in IMG/M
3300018005\|Ga0187878_1321778	Not Available	550	Open in IMG/M
3300018006\|Ga0187804_10135716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1030	Open in IMG/M
3300018006\|Ga0187804_10344433	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300018007\|Ga0187805_10146841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1073	Open in IMG/M
3300018008\|Ga0187888_1101782	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1222	Open in IMG/M
3300018012\|Ga0187810_10258031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300018016\|Ga0187880_1002116	All Organisms → cellular organisms → Bacteria → Acidobacteria	15586	Open in IMG/M
3300018022\|Ga0187864_10501722	Not Available	508	Open in IMG/M
3300018023\|Ga0187889_10237185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	825	Open in IMG/M
3300018023\|Ga0187889_10260138	Not Available	778	Open in IMG/M
3300018024\|Ga0187881_10341444	Not Available	617	Open in IMG/M
3300018026\|Ga0187857_10396268	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300018035\|Ga0187875_10209202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1074	Open in IMG/M
3300018038\|Ga0187855_10314045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	916	Open in IMG/M
3300018038\|Ga0187855_10705411	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300018040\|Ga0187862_10442253	Not Available	791	Open in IMG/M
3300018040\|Ga0187862_10635317	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	629	Open in IMG/M
3300018042\|Ga0187871_10481699	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300018043\|Ga0187887_10371381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300018047\|Ga0187859_10184766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1110	Open in IMG/M
3300018062\|Ga0187784_11257987	Not Available	587	Open in IMG/M
3300019787\|Ga0182031_1465183	All Organisms → cellular organisms → Bacteria	2151	Open in IMG/M
3300019787\|Ga0182031_1473175	All Organisms → cellular organisms → Bacteria	2047	Open in IMG/M
3300019787\|Ga0182031_1524509	All Organisms → cellular organisms → Bacteria	1752	Open in IMG/M
3300020580\|Ga0210403_10913093	Not Available	692	Open in IMG/M
3300020581\|Ga0210399_11294039	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	574	Open in IMG/M
3300021178\|Ga0210408_10529408	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	936	Open in IMG/M
3300021180\|Ga0210396_11624675	Not Available	527	Open in IMG/M
3300021181\|Ga0210388_11681032	Not Available	525	Open in IMG/M
3300021477\|Ga0210398_10722342	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300025134\|Ga0207416_1076812	Not Available	1271	Open in IMG/M
3300025553\|Ga0208080_1023302	Not Available	2029	Open in IMG/M
3300026217\|Ga0209871_1038143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	905	Open in IMG/M
3300027634\|Ga0209905_1009122	Not Available	1252	Open in IMG/M
3300027767\|Ga0209655_10161940	Not Available	740	Open in IMG/M
3300027783\|Ga0209448_10275201	Not Available	553	Open in IMG/M
3300027867\|Ga0209167_10733875	Not Available	539	Open in IMG/M
3300027895\|Ga0209624_11113431	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300027898\|Ga0209067_10709041	Not Available	583	Open in IMG/M
3300028783\|Ga0302279_10036507	All Organisms → cellular organisms → Bacteria	3213	Open in IMG/M
3300028800\|Ga0265338_11082724	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	540	Open in IMG/M
3300029907\|Ga0311329_10961367	Not Available	532	Open in IMG/M
3300029939\|Ga0311328_10611362	Not Available	749	Open in IMG/M
3300029999\|Ga0311339_10989186	Not Available	789	Open in IMG/M
3300030519\|Ga0302193_10222276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1040	Open in IMG/M
3300030659\|Ga0316363_10328301	Not Available	606	Open in IMG/M
3300030706\|Ga0310039_10030718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2493	Open in IMG/M
3300030707\|Ga0310038_10229711	All Organisms → cellular organisms → Bacteria → Acidobacteria	869	Open in IMG/M
3300030707\|Ga0310038_10313033	Not Available	704	Open in IMG/M
3300031128\|Ga0170823_10894998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	846	Open in IMG/M
3300031247\|Ga0265340_10139791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1108	Open in IMG/M
3300031261\|Ga0302140_10095123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3010	Open in IMG/M
3300031524\|Ga0302320_11798629	Not Available	584	Open in IMG/M
3300031708\|Ga0310686_116314964	Not Available	610	Open in IMG/M
3300031753\|Ga0307477_11135443	Not Available	509	Open in IMG/M
3300032160\|Ga0311301_12975645	Not Available	510	Open in IMG/M
3300032770\|Ga0335085_10603601	Not Available	1235	Open in IMG/M
3300033798\|Ga0334821_046149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	868	Open in IMG/M
3300033887\|Ga0334790_058704	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300034125\|Ga0370484_0240425	Not Available	501	Open in IMG/M
3300034163\|Ga0370515_0009192	All Organisms → cellular organisms → Bacteria	4739	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.23%
Host-Associated	Host-Associated	1.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.56%
Aquatic	Environmental → Aquatic	48.67%
Plants	Host-Associated → Plants	1.77%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	43.36%
Soil	Environmental → Terrestrial → Soil	41.59%
Peat	Environmental → Terrestrial → Peat	7.96%
Sediment	Environmental → Aquatic → Sediment	3.54%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.77%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	43.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.39%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.96%
Loam	Environmental → Terrestrial → Soil → Loam	5.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.77%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	25.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.93%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	11.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.08%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.19%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.54%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	15.04%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	11.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.62%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.19%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.31%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.54%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.54%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.65%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.77%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.77%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001100	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1	Environmental	Open in IMG/M
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007819	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009614	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025553	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300027634	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812S1M	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028783	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030519	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033798	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-S	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12703J13194_1003792	3300001100	Forest Soil	MATNVVNHVQKLATADKTFNDLPPTIAEILEQEALTTTYPTGAMLFAEGQVARG
JGI12636J13339_10124241	3300001154	Forest Soil	MATQIVNNAQKLAPIDNTFCDLSQAVADIVENEALTT
JGI26341J46601_100737901	3300003219	Bog Forest Soil	MAAHIVNHPQKFAPADKTTCEFPPTVAEALEQDALTTTYPTGAVLFAEGQAARG
JGI26345J50200_10440431	3300003352	Bog Forest Soil	MATHIVDNAQKLAPAVKTLGDFPPSLVDALEREAITTTYPTGAVLFAEAQAPRGV
Ga0062384_1000341881	3300004082	Bog Forest Soil	MATHIVDNAQKLAPAVKTLGDFPPSLVDALEREAITTTYPTGAVLFAEAQAPRGVFIVRRGR
Ga0062386_1012937001	3300004152	Bog Forest Soil	MATQAVTHTYKVAPAEKIFCDFPPVVTEALEQEALTTSYPTGAV
Ga0070714_1005913262	3300005435	Agricultural Soil	MATQIVNNAQKLAPVDKTFGNLPPAVVEVLEHESLTTTYPTGAV
Ga0070733_103285062	3300005541	Surface Soil	MATHIVNNINKNAVADKAFCDLPAAVASAVEQEALTTTYPTG
Ga0070764_108747352	3300005712	Soil	MAAHIVNNAHHVVPVDKTFCDLSAAVADVLEQESITTTYPTGAVL
Ga0080026_101167331	3300005952	Permafrost Soil	MATHPLGSVQKPVQADKTFGDLPPALAETLEQEAITTTYPTGAVLFTEGQPARGVFLVRR
Ga0070717_120119912	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MATQTVNHPQKLVPADKTFCNLSPAIVDILEQEAVTTTYP
Ga0075023_1005040872	3300006041	Watersheds	MATHVVTHAQKLAPADQTFCSLPPAVADALEQAAITTSYPTGAVLFAEGQAPRG
Ga0075017_1013701452	3300006059	Watersheds	MATHVVNTPQKLTAVDRTFCDLPPAVADALEQAALTTTYPTGAVLF
Ga0075019_108662311	3300006086	Watersheds	MATHAVNNPPKLAPLDKTFGDLPQHMAEALEQAALTTTYPTGAVLFAEAQSPRGVFIVRRGRV
Ga0073928_111451042	3300006893	Iron-Sulfur Acid Spring	MATHIVNNVQKNAVADKTFSDLPAAVASAVEQEALTTTYPTGAVLFAEGQAP
Ga0104322_1104932	3300007819	Permafrost Soil	MATQIVNNAQKLAPVDKTFGNLAAAVVEVLEHESLTTTYPTGAVLFAEGQTARGM
Ga0116222_14196562	3300009521	Peatlands Soil	VEALKMATQVVNHVQKPAPADKTFSDFPPIVAEALEQEALTTTYPTGAVLFAEGQAPRG
Ga0116221_11420342	3300009523	Peatlands Soil	MVNNIQKLTPADKTFGDLPPAVAEALEQEALTTTYPTG
Ga0116104_11220182	3300009614	Peatland	MATQTVNHAQKLALVDKTFFDLPPAIADALEQAALTTSYPTGAVLFAEAQASRGVFIVRRGR
Ga0116123_11278211	3300009617	Peatland	MATHVVNEAQKLAATDKTFCDLPPSIANTLEQEAL
Ga0116105_10106261	3300009624	Peatland	MATQFLHNGEKFAPADKAFCDLPPVVAAAVEQDSLTTSYPTGAVLFAEGQAPRGI
Ga0116115_10066234	3300009631	Peatland	MATYAVNNAQKLAPADKTFCDLPPAVADALEQEALTTTYPTGAVLF
Ga0116115_10548012	3300009631	Peatland	MATQTVIHAQKPAPVEKIFSDFPPAVADALEQEGLTT
Ga0116117_11052161	3300009635	Peatland	MATQVVNNAQKLTVADKTFGDLPHAAVEALEQAAVTTTYPTGAVLFAEAQSPRGVYIVRR
Ga0116118_10517822	3300009637	Peatland	MATQVVNHTQKLASADKTFCDLPPAVAEALEQDAITTSYPPGAVLFAEGQ
Ga0116120_10278602	3300009641	Peatland	MATHVVNAAQKLATTDKTFCDLPPSIADTLEQEALTTTYPTGAVLFAEGQ
Ga0116110_10319241	3300009643	Peatland	MATHVVNEAQKLATADKTFCDLPTTVADALEQEALTTTYPTGAVLF
Ga0116110_10406022	3300009643	Peatland	MATYAVNNAQKLAPADKTFCDLPPAVADALEQEALT
Ga0116121_13149462	3300009644	Peatland	MATHVVNEALRLATTDKTFCDLPPAIADTLEQEALTTTYP
Ga0116106_10308683	3300009645	Peatland	MATYAVNNAQKLAPTDKTFCDLPPAIADALEQEALTTSYPTGAVLFAE
Ga0116224_100231521	3300009683	Peatlands Soil	MATHVVNQAQKLATADKTFCDLPPAIADTLEQEALTTTYPT
Ga0116224_100888022	3300009683	Peatlands Soil	MATHIVNHTQKLASPDKAFCDFPPAVADALEQEAVTTT
Ga0116134_12618592	3300009764	Peatland	MATHIVNNAQKLTPAVKAVSDFPPSLVDALEREAITTTYPTGAVLFAEG
Ga0116223_102390451	3300009839	Peatlands Soil	VEALKMATQVVNHVQKPAPADKTFSDFPPIVAEALEQEALTTTYPTGAVLFAEGQAPRGVFIV
Ga0116223_104826311	3300009839	Peatlands Soil	MATHIVNSTQKLAPVDKTFDDLPLAVVDALEQEALTTTYPTGAVLFAEGQSPRGVFIVRR
Ga0116223_107549621	3300009839	Peatlands Soil	MATHILNHTQKLAPADKTFSDFPPAVTEALEQDALTTTYPTGAVLFAEG
Ga0074044_100968741	3300010343	Bog Forest Soil	MATQVVNHTQKLASADKTFCDLPPAVAEALEQDAITTSYPPGAV
Ga0126381_1017177821	3300010376	Tropical Forest Soil	MATNIVNHTHRAASGDKTFGEFPAAVADVLEQEAVTTTYPTGAVLFAEGQAPRGVFFVRRGR
Ga0137378_105978092	3300012210	Vadose Zone Soil	MATHIVNNTQRLEAVDKTFCDLSPSVANALEEVALTTTYPTGAVLFTQAQAPR
Ga0181524_105210912	3300014155	Bog	MATHIVNHNQKPAPVAKSVCEFPPAVAEALEQDALTTTYPTGAVLFAEGQ
Ga0181530_100311651	3300014159	Bog	MATHVVTNPPKFTAVDRTFCDLPPAVAEALEQAALTTTYPTGAVL
Ga0181538_104006921	3300014162	Bog	MATYAVNNTPKLTPADKTFCDLPPAVAEALEQEALTTSYPTGAVLF
Ga0181538_106362072	3300014162	Bog	MATQTVNHAQKLALVDKTFFDLPPAIADALEQAALTTSYPTGAVLFAEAQASRGVFIVRRGRVKL
Ga0181537_110270521	3300014201	Bog	MATHIVSNDVQKPAANKSFGELPAVVADALEKEAITTTYPTGAVLFAEGQAPRGVFIV
Ga0181525_100122511	3300014654	Bog	MATHIVSNDVQKPAANKSFGELPAVVADALEKEAITTTYPTGAVLFAEGQAPRG
Ga0187820_11984661	3300017924	Freshwater Sediment	MATHIVNKLQRDSDKALNDLPSAVADSVEQTALTTTYPTGAVLFAEGQAQRG
Ga0187803_104116321	3300017934	Freshwater Sediment	MATQIVNHAQRLAPADKTYSDLSPALADALEQEALTTSYPTGAVLF
Ga0187809_103660872	3300017937	Freshwater Sediment	MATHIINNAQKLGPAVKTFCDFPPAVADALEQEALTTAYPTGAVLFSEGQ
Ga0187781_102348741	3300017972	Tropical Peatland	MATQIVNHAQRAAAADKTFDKTFGNLPAAIIDLLEQEAITTTYPTGAVLFAEGQIPRGVFIVRHGR
Ga0187781_108036311	3300017972	Tropical Peatland	MATHVVNAVQKLATADKTFCDLPTIVADALEQEALTTTYPTG
Ga0187782_113495171	3300017975	Tropical Peatland	MATLVVNHPQRPTPVDKTISDLPPAVAEALEQESLTTSYPTGAVLFAEGQSPRGVFIVRRGR
Ga0187868_12919412	3300018002	Peatland	MATYAVNNAQKLASTDKTFCDLPPAIADALEQEAL
Ga0187878_13217781	3300018005	Peatland	MATYAVNNAQKLAPADKTFCDLPPAVADALEQEAL
Ga0187804_101357161	3300018006	Freshwater Sediment	MATQIVNHAQRLAPADKTYSDLSPALADALEQEALTTSYPTGAVLFAEGQAPRGVFI
Ga0187804_103444332	3300018006	Freshwater Sediment	MATHIVNAQRLVPADKTFCDLPIAVADALEQEALT
Ga0187805_101468412	3300018007	Freshwater Sediment	MATHVINHPHKAAPADKTFGDLSPSVVEALEQEALTTTYP
Ga0187888_11017822	3300018008	Peatland	MATHIVNNTQKLAADKSAGDFPAALAHALEQEAVT
Ga0187810_102580311	3300018012	Freshwater Sediment	MATHMVNSNTQKLAPVEKSFCDFSPAVADALEQVA
Ga0187880_100211611	3300018016	Peatland	MATQVVNHTQKLASADKTFCDLPPAVAEALEQDAITTSYPPGAVLF
Ga0187864_105017221	3300018022	Peatland	MATQFLHNGEKFAPADKAFCDLPPVVAAALEQDSLTTSYPT
Ga0187889_102371851	3300018023	Peatland	MATQVVNHTQKLASADKTFCDLPPAVAEALEQDAITTSYPPGAVL
Ga0187889_102601381	3300018023	Peatland	MATHIVNNTQKLAADKSAGDFPAALAHALEQEAVTTTYPTGAVLFAEGQAPRGVF
Ga0187881_103414441	3300018024	Peatland	MATHVVNEAQKLATTDKTFCDLPPTIADTLEQEALTTTYPTGAVL
Ga0187857_103962681	3300018026	Peatland	MATQVVNKIQKVAPADKTFCSLPPALAEALEQEAITTTYPTGA
Ga0187875_102092022	3300018035	Peatland	MATYAVNNTPKLTPADKTFCDLPPAVAEALEQEALTT
Ga0187855_103140451	3300018038	Peatland	MATHIVNNTQKLAADKSAGDFPAALAHALEQEAVTTTYPTGAVL
Ga0187855_107054112	3300018038	Peatland	MATQIVNQIRKFAADKSFCGLSPAITDALEQEAITTTYP
Ga0187862_104422532	3300018040	Peatland	MATPIVNNAPKLVLVDKTFFGLPEAAVDAIEQALLTTSYPTGAVLFAE
Ga0187862_106353171	3300018040	Peatland	MATHVVNNVQKLAPADKTFCDFPPIVAEALEQEALTTTYPTGAVLFAEGQ
Ga0187871_104816991	3300018042	Peatland	MATHIVNNTQKLAADKSAGDFPAALAHALEQEAVTTTYPTGA
Ga0187887_103713812	3300018043	Peatland	MATHIVSNDVRKPAANKSFGELPFGELPAVVADALEKEAITTTYPTGAVLFAEGQAPRG
Ga0187859_101847661	3300018047	Peatland	MATQVVNHAQKITPIDKNFGDLPPVVADALEHDAITTSYPTGA
Ga0187784_112579871	3300018062	Tropical Peatland	MATLVVNHPQRPTPADKTISDLPPAVAEALEQESLTTSYPTGAVLFAEGQSPRGVFIV
Ga0182031_14651834	3300019787	Bog	MATQVLNHVQKLAPVDKTFCDLPPVVAEALEREALTTSYPTGAVLFAEGQSPRGCSSSVAAT
Ga0182031_14731753	3300019787	Bog	MATQVLNHVQKLAPVDKTFCDLPPVVAEALEREALTTSYPTGAVLFAKASLLAGCSSSVAAT
Ga0182031_15245091	3300019787	Bog	MATQVLNHVQKLAPVDKTFCDLPPVVAEALEREALTTSYPT
Ga0210403_109130932	3300020580	Soil	MAAHIINHTEKPVPVVKSFCDFPASLANALEQEAITTTYPTGAVLFA
Ga0210399_112940392	3300020581	Soil	MAAHIVNNAHNAVPVDKTFCDLSAAVADVLEQESITTTYPTGAVLFAEGQAT
Ga0210408_105294082	3300021178	Soil	MATQVVNHAQKLAPAVKTLGDLPRAVAEAVEQEALTTTYPTGA
Ga0210396_116246752	3300021180	Soil	MAAHIINHTEKPVPVVKSFCDFPASLANALEQEAITTTYP
Ga0210388_116810322	3300021181	Soil	MAAHIVNNAHNAVPVDKTFCDLSAAVADVLEQESITTTYPTGAVLFAE
Ga0210398_107223422	3300021477	Soil	MATHIVNNIQRNVVADKAFSDLPAAVASAIEQEALTTTYPTGAVLF
Ga0207416_10768121	3300025134	Iron-Sulfur Acid Spring	MATHMVNNINENTVADKTFSDLPAAVASAVEQEALTTTYPTGAVLFAEGQ
Ga0208080_10233022	3300025553	Arctic Peat Soil	MATHIVNNAQKLAPADSTFCDLPPVVGDALEQEALTTTYPTGAVLFAE
Ga0209871_10381432	3300026217	Permafrost Soil	MATHLLLIVQKPVQADKTFGDLPPALAETLEQEAITTTYPTGAVLFTEGQPARGVFLVRR
Ga0209905_10091222	3300027634	Thawing Permafrost	MATQVLNHVQKLAPVDKTFCDLPPVVAEALEREALTTSYPTGAVLF
Ga0209655_101619401	3300027767	Bog Forest Soil	MATHVVVNPQKLATADKAFCDLSPAVADALEQSALTTSYPTGAVLFAEG
Ga0209448_102752011	3300027783	Bog Forest Soil	MATHVVNNPPKLTAVDRTFCDLPPAVADALEQAALTTTYPTG
Ga0209167_107338752	3300027867	Surface Soil	MMATHITNSAQRLASADTTFSDLPPAVAEALEHESLTTTYPTGAVLFAEGQTPRGVFIVR
Ga0209624_111134311	3300027895	Forest Soil	MATQVVNHAQILAPAVKTLGDLPRAVAEAVEQEALTITYPTGAILFAEGQAPRGVFIVRRGRV
Ga0209067_107090411	3300027898	Watersheds	MATHAVNNPPKLAPLDKTFGDLPQHMAEALEQAALTTTYPTGAVLFAEAQSPRGVFIVRRGRVKL
Ga0302279_100365073	3300028783	Bog	MATQVLNHVQKLAPVDKTFCDLPPVVAEALEREALTTSYPTGAVLFAE
Ga0265338_110827242	3300028800	Rhizosphere	MATHIVNNAQRLAPVDKTFCDLPPAVAEAVEQAALTTSYPTGAVLFAEA
Ga0311329_109613671	3300029907	Bog	MATQVVNHAQRMATPDKTFCDLPPAVAEALEQAALTTSYPTGAVLFAEAQSPRGIYIVRRGR
Ga0311328_106113621	3300029939	Bog	MATQVVNHAQRMATPDKTFCDLPPAVAEALEQAALTTSYPTGAVLFAEAQSPRGIYIVRR
Ga0311339_109891862	3300029999	Palsa	MATHVVDNPPKPTAADRAFSDLSPVAADALEQSALTTSYPTGAVL
Ga0302193_102222762	3300030519	Bog	MATHVVFQTPKPVTPDTTFCDLPPALAELLEQVALTTSYPTG
Ga0316363_103283011	3300030659	Peatlands Soil	MATHIVNSTQKLAPVDKTFDDLPLAVVDALEQEALTTTYPTGAVLFAEGQSP
Ga0310039_100307181	3300030706	Peatlands Soil	MATHIVNNTQKLAPAAKTFCDFPPSLVDALEQEAITTTYPTGAVLFAEGQ
Ga0310038_102297111	3300030707	Peatlands Soil	MATHIVNNSQKLAPVLRAVCDFPPAVADAFEQEALTTTYPTGAVLFAEGQAPRGVFIV
Ga0310038_103130331	3300030707	Peatlands Soil	MATHIVNHPHKAAPADKTFGDLPPSVVEALEQESLTTTYPTGAVLFAEGQAPRG
Ga0170823_108949982	3300031128	Forest Soil	MATHIVNRAQKVASADKTFCDLPPAIADTLEQETITTTYPTGAVLFSE
Ga0265340_101397912	3300031247	Rhizosphere	MATHIVNNAQRLAPVDKTFCDLPPAVAEAVEQAALTTSYPTGAVLF
Ga0302140_100951231	3300031261	Bog	MATHVVFQTPKPVTPDTTFCDLPPALAELLEQVALTTSYPTGAVLFAEAQSPRGVFVVRR
Ga0302320_117986292	3300031524	Bog	MATQVVNHAQRMATPDKTFCDLPPAVAEALEQAALTTSYPTGAVLFAEAQSPRGIYIVRRGRV
Ga0310686_1163149641	3300031708	Soil	MATHSVSNIEKVASADKTFCDLPPAVAEALEREAITTT
Ga0307477_111354431	3300031753	Hardwood Forest Soil	MATHTVNHSQKLTSTDKTFCDLPPAVAEAVEQEALTTT
Ga0311301_129756451	3300032160	Peatlands Soil	MATHIVNHPHKAAPADRTFGDLPPVIAEALEQEALTTTYP
Ga0335085_106036011	3300032770	Soil	MATHVVNNAQKAADKTFCDLPPAVVDALEQEALTTTYPTGAVLFA
Ga0334821_046149_733_867	3300033798	Soil	MATYAVNNAQKLVLVDKTFFDLPPAVADAVEQEALTTSYPTGAVL
Ga0334790_058704_1239_1391	3300033887	Soil	MATHIVNNVNKNAVADKAFNDLPAAVASAVEQEALTTTYPTGAVLFAEGQA
Ga0370484_0240425_382_501	3300034125	Untreated Peat Soil	MATHVVNNAQRLAPADKTFSDLPPAVADAVEQEALTTTYP
Ga0370515_0009192_4628_4738	3300034163	Untreated Peat Soil	MASHIVDHSQKPAASDKTFCDLPPAIAATLEQEAITT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F082242

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences