NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F081940

Metagenome Family F081940

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F081940
Family Type Metagenome
Number of Sequences 114
Average Sequence Length 40 residues
Representative Sequence LIEIRGQIARKLKFWGQLGAGLKKFAAKDQSAKGATIEGLN
Number of Associated Samples 19
Number of Associated Scaffolds 114

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.88 %
% of genes near scaffold ends (potentially truncated) 21.93 %
% of genes from short scaffolds (< 2000 bps) 41.23 %
Associated GOLD sequencing projects 19
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (54.386 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza
(61.404 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(77.193 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 56.52%    β-sheet: 0.00%    Coil/Unstructured: 43.48%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 114 Family Scaffolds
PF00078RVT_1 1.75
PF03732Retrotrans_gag 1.75
PF03405FA_desaturase_2 0.88
PF09735Nckap1 0.88
PF00875DNA_photolyase 0.88
PF04618HD-ZIP_N 0.88
PF14223Retrotran_gag_2 0.88
PF13650Asp_protease_2 0.88
PF05699Dimer_Tnp_hAT 0.88
PF01657Stress-antifung 0.88
PF02866Ldh_1_C 0.88
PF00067p450 0.88
PF13963Transpos_assoc 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 114 Family Scaffolds
COG0039Malate/lactate dehydrogenaseEnergy production and conversion [C] 0.88
COG0415Deoxyribodipyrimidine photolyaseReplication, recombination and repair [L] 0.88
COG2124Cytochrome P450Defense mechanisms [V] 0.88


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A54.39 %
All OrganismsrootAll Organisms45.61 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2035918001|WWPM1086_GHCZ7500_g1Not Available700Open in IMG/M
3300028786|Ga0307517_10001210All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa43383Open in IMG/M
3300028786|Ga0307517_10008082All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa15161Open in IMG/M
3300028786|Ga0307517_10014568All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus10549Open in IMG/M
3300028786|Ga0307517_10023725All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa7606Open in IMG/M
3300028786|Ga0307517_10043114All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta4814Open in IMG/M
3300028786|Ga0307517_10054702All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus euphratica3938Open in IMG/M
3300028786|Ga0307517_10058207All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae3728Open in IMG/M
3300028786|Ga0307517_10144444Not Available1656Open in IMG/M
3300028786|Ga0307517_10350203Not Available802Open in IMG/M
3300028786|Ga0307517_10500523Not Available618Open in IMG/M
3300028786|Ga0307517_10516161Not Available604Open in IMG/M
3300028786|Ga0307517_10582012Not Available554Open in IMG/M
3300028786|Ga0307517_10622514Not Available528Open in IMG/M
3300028794|Ga0307515_10010769All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus17453Open in IMG/M
3300028794|Ga0307515_10018229All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta12732Open in IMG/M
3300028794|Ga0307515_10020117All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida11939Open in IMG/M
3300028794|Ga0307515_10036228All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta7989Open in IMG/M
3300028794|Ga0307515_10061190Not Available5348Open in IMG/M
3300028794|Ga0307515_10084399Not Available4079Open in IMG/M
3300028794|Ga0307515_10093609All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana3723Open in IMG/M
3300028794|Ga0307515_10103404Not Available3414Open in IMG/M
3300028794|Ga0307515_10107796Not Available3288Open in IMG/M
3300028794|Ga0307515_10175340Not Available2117Open in IMG/M
3300028794|Ga0307515_10343111Not Available1144Open in IMG/M
3300028794|Ga0307515_10486413Not Available846Open in IMG/M
3300030521|Ga0307511_10100188Not Available1907Open in IMG/M
3300030522|Ga0307512_10023075Not Available5566Open in IMG/M
3300030522|Ga0307512_10378712Not Available606Open in IMG/M
3300031456|Ga0307513_10022430All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus7423Open in IMG/M
3300031456|Ga0307513_10062163Not Available3948Open in IMG/M
3300031456|Ga0307513_10084436Not Available3261Open in IMG/M
3300031456|Ga0307513_10100367Not Available2920Open in IMG/M
3300031456|Ga0307513_10195142Not Available1871Open in IMG/M
3300031456|Ga0307513_10219776Not Available1722Open in IMG/M
3300031456|Ga0307513_10246014Not Available1589Open in IMG/M
3300031456|Ga0307513_10662541Not Available750Open in IMG/M
3300031456|Ga0307513_10672674Not Available741Open in IMG/M
3300031456|Ga0307513_10764680Not Available671Open in IMG/M
3300031456|Ga0307513_10795396Not Available651Open in IMG/M
3300031507|Ga0307509_10003323All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta24604Open in IMG/M
3300031507|Ga0307509_10057256Not Available4133Open in IMG/M
3300031507|Ga0307509_10060657Not Available3996Open in IMG/M
3300031507|Ga0307509_10157195Not Available2177Open in IMG/M
3300031507|Ga0307509_10196617Not Available1859Open in IMG/M
3300031507|Ga0307509_10298375Not Available1361Open in IMG/M
3300031507|Ga0307509_10709037Not Available672Open in IMG/M
3300031507|Ga0307509_10916270Not Available541Open in IMG/M
3300031616|Ga0307508_10055320All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana3515Open in IMG/M
3300031616|Ga0307508_10203903Not Available1578Open in IMG/M
3300031616|Ga0307508_10279848Not Available1261Open in IMG/M
3300031616|Ga0307508_10336716Not Available1100Open in IMG/M
3300031616|Ga0307508_10375034Not Available1013Open in IMG/M
3300031616|Ga0307508_10416975Not Available934Open in IMG/M
3300031616|Ga0307508_10733998Not Available599Open in IMG/M
3300031649|Ga0307514_10392062Not Available714Open in IMG/M
3300031649|Ga0307514_10491178Not Available587Open in IMG/M
3300031730|Ga0307516_10005297All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta15521Open in IMG/M
3300031730|Ga0307516_10327598All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → unclassified Sphingobacteriaceae → Sphingobacteriaceae bacterium1201Open in IMG/M
3300031730|Ga0307516_10412600Not Available1008Open in IMG/M
3300031730|Ga0307516_10538929Not Available821Open in IMG/M
3300031730|Ga0307516_10691380Not Available676Open in IMG/M
3300031730|Ga0307516_10865299Not Available568Open in IMG/M
3300031838|Ga0307518_10091330All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana2190Open in IMG/M
3300031838|Ga0307518_10215435All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus alba1259Open in IMG/M
3300031838|Ga0307518_10464081Not Available670Open in IMG/M
3300032354|Ga0325403_1001113All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus21737Open in IMG/M
3300032354|Ga0325403_1003154All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus14926Open in IMG/M
3300032354|Ga0325403_1003953Not Available13679Open in IMG/M
3300032354|Ga0325403_1004868All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus12563Open in IMG/M
3300032354|Ga0325403_1006616Not Available11046Open in IMG/M
3300032354|Ga0325403_1008628All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus deltoides9738Open in IMG/M
3300032354|Ga0325403_1009975Not Available9057Open in IMG/M
3300032354|Ga0325403_1011259Not Available8490Open in IMG/M
3300032354|Ga0325403_1015175All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta7199Open in IMG/M
3300032354|Ga0325403_1016827All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus euphratica6769Open in IMG/M
3300032354|Ga0325403_1018132All Organisms → cellular organisms → Bacteria6470Open in IMG/M
3300032354|Ga0325403_1019649All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida6149Open in IMG/M
3300032354|Ga0325403_1023929All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana5394Open in IMG/M
3300032354|Ga0325403_1027534All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta4870Open in IMG/M
3300032354|Ga0325403_1031449All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana4416Open in IMG/M
3300032354|Ga0325403_1032703All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus4282Open in IMG/M
3300032354|Ga0325403_1050973All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana2867Open in IMG/M
3300032354|Ga0325403_1053123All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus2747Open in IMG/M
3300032354|Ga0325403_1076310All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus euphratica1778Open in IMG/M
3300032355|Ga0325401_1002041All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus17629Open in IMG/M
3300032355|Ga0325401_1003090All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus15103Open in IMG/M
3300032355|Ga0325401_1014336All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa7578Open in IMG/M
3300032355|Ga0325401_1034218All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa4348Open in IMG/M
3300032355|Ga0325401_1089421Not Available1793Open in IMG/M
3300032355|Ga0325401_1091189All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus euphratica1753Open in IMG/M
3300032374|Ga0325400_1009901All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana9116Open in IMG/M
3300032374|Ga0325400_1142320All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana1305Open in IMG/M
3300032389|Ga0325405_1001671All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus22641Open in IMG/M
3300032389|Ga0325405_1009711All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus9385Open in IMG/M
3300032389|Ga0325405_1011808All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max8370Open in IMG/M
3300032389|Ga0325405_1066754Not Available1702Open in IMG/M
3300032390|Ga0325404_1003954All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae15795Open in IMG/M
3300032735|Ga0325410_1000599All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae37935Open in IMG/M
3300032735|Ga0325410_1017669Not Available6896Open in IMG/M
3300033180|Ga0307510_10124373All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana2273Open in IMG/M
3300033180|Ga0307510_10129177Not Available2206Open in IMG/M
3300033180|Ga0307510_10455953Not Available719Open in IMG/M
3300033180|Ga0307510_10525487Not Available627Open in IMG/M
3300033180|Ga0307510_10598996Not Available553Open in IMG/M
3300034389|Ga0325419_000990All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus31221Open in IMG/M
3300034389|Ga0325419_002751All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta19827Open in IMG/M
3300034389|Ga0325419_010873All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa9381Open in IMG/M
3300034389|Ga0325419_022820Not Available5496Open in IMG/M
3300034389|Ga0325419_023160Not Available5434Open in IMG/M
3300034389|Ga0325419_042465Not Available2983Open in IMG/M
3300034389|Ga0325419_049286All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana2483Open in IMG/M
3300034389|Ga0325419_067118All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae1577Open in IMG/M
3300034389|Ga0325419_095049Not Available893Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza61.40%
XylemHost-Associated → Plants → Wood → Unclassified → Unclassified → Xylem29.82%
LeafHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf7.89%
Wastewater Plasmid PoolsEngineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater Plasmid Pools0.88%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2035918001Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Visp-2009 (Newbler)EngineeredOpen in IMG/M
3300028786Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EMHost-AssociatedOpen in IMG/M
3300028794Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EMHost-AssociatedOpen in IMG/M
3300030521Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EMHost-AssociatedOpen in IMG/M
3300030522Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EMHost-AssociatedOpen in IMG/M
3300031456Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EMHost-AssociatedOpen in IMG/M
3300031507Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EMHost-AssociatedOpen in IMG/M
3300031616Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EMHost-AssociatedOpen in IMG/M
3300031649Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EMHost-AssociatedOpen in IMG/M
3300031730Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EMHost-AssociatedOpen in IMG/M
3300031838Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EMHost-AssociatedOpen in IMG/M
3300032354Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4Host-AssociatedOpen in IMG/M
3300032355Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2Host-AssociatedOpen in IMG/M
3300032374Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1Host-AssociatedOpen in IMG/M
3300032389Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2Host-AssociatedOpen in IMG/M
3300032390Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1Host-AssociatedOpen in IMG/M
3300032735Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3Host-AssociatedOpen in IMG/M
3300033180Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EMHost-AssociatedOpen in IMG/M
3300034389Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
WWPMV_306202035918001Wastewater Plasmid PoolsLIEIRGQIAKKLKFWGQLGFKLIKFAAKDQYAKGAKL
Ga0307517_1000121023300028786EctomycorrhizaLIKIRGQIARKLKFWGQLGAGLKKFGAKDQSAKGATIEGLN
Ga0307517_1000808273300028786EctomycorrhizaLIEIRGKIARKLKFLGQLGVKLTKFTVNDQSAKGARGLN
Ga0307517_1001456833300028786EctomycorrhizaLIGIKGQIARKLKFWGQLGAKLKKFTDKDQSAKGAKIEELN
Ga0307517_1002372543300028786EctomycorrhizaLIEIRGQIARKLKFSGPLGVELTKFAAKDVSVKGAKL
Ga0307517_1004311423300028786EctomycorrhizaLFEIRGQIARKLKFWGQLGAGLKKFAAKDQSAKGATIKGLN
Ga0307517_1005470273300028786EctomycorrhizaLIEIRGQIARKLKFWGQLGAGLKKFAAKDQSAKGATIEGLD
Ga0307517_1005820713300028786EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLKKLTAKDVSVKDAKIKGLN
Ga0307517_1014444413300028786EctomycorrhizaLIEIRGQIARKLKFWGQLGAKLKKFAAKDQSAKGAKIEGLK
Ga0307517_1035020313300028786EctomycorrhizaLIEIKGQLARKLKFWGQLGAGLKKFVVKDQYAKGATIEELN
Ga0307517_1050052313300028786EctomycorrhizaLIEIRGQIARKLKFWGQLGAKLKKFAANDQSAKGAKIEGLK
Ga0307517_1051616113300028786EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLKKLTAKDVSEKGAKIKGLN
Ga0307517_1058201213300028786EctomycorrhizaLVEIRGQIAIKLKFWGQLEAKLKKLAARGQSAKGAKMKGLN
Ga0307517_1062251413300028786EctomycorrhizaLIEIRGQIARKLKFWGQLGAGLKKFATKDQSAKGATIEGLN
Ga0307515_1001076933300028794EctomycorrhizaLIEIRGPIARTLKFWGQLGVKLKKLTAKDHSAKGENIWGLN
Ga0307515_1001822913300028794EctomycorrhizaLIEIRGQTARKLKFWGQLGVKLKKLIAKDISVKGAKIKGLN
Ga0307515_10020117103300028794EctomycorrhizaLIEIRGPIARKLKFWDQLGAGLKKFAPKDHSTKGATIEGLN
Ga0307515_1003622823300028794EctomycorrhizaLIEIRDKIARKLKFLGQLGVKLTKFAANDQSAKGARGLN
Ga0307515_1006119023300028794EctomycorrhizaLIEIRGKIARKLKFWGQLRAKLKKFAARDQSAKGAKI
Ga0307515_1008439913300028794EctomycorrhizaIEIRGQIARKLKFWGQLGVKLKKLTAKDVSVKGAKIKGLN
Ga0307515_1009360943300028794EctomycorrhizaLINIRGQIARKLKFWGQLGAGLKKFGAKDQSAKGATIEGLN
Ga0307515_1010340413300028794EctomycorrhizaFLPSQLIEIKDKIARKLKFWGQLGDKLKIFVAKDQSAKDVELQGLN
Ga0307515_1010779623300028794EctomycorrhizaLIEIRGQIARKLKFWGQLEAKLKKSEAKDQSAKGGKLWGFN
Ga0307515_1017534023300028794EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLKKMTAKDDSVKGAKIKGLN
Ga0307515_1034311123300028794EctomycorrhizaLNGNKIFYQVLIEIRDQIARKLKFWGQLGAGLKKFAAKDQSAKGTTIEGFN
Ga0307515_1048641313300028794EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLTDFAAKDQSAKGAKIGGLN
Ga0307511_1010018813300030521EctomycorrhizaLIEIRGKIARKLKFWGQLGAKLKKFAAKDQSAKGAKIEGLK
Ga0307512_1002307553300030522EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLKKLTAKDVSVKGAKIKG
Ga0307512_1037871213300030522EctomycorrhizaLIGIKGQIARKLKFWGQLGAKVKKFTDKDQSAKGAKIEELN
Ga0307513_10022430113300031456EctomycorrhizaLIEIRGQIARKLKFWGQLEAKLKKFAAKDQSAMAPKLRGLIDKKRG
Ga0307513_1006216313300031456EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLKKFTAKDQSAKGAGL
Ga0307513_1008443623300031456EctomycorrhizaLIEIRGQIARKLKFWGQLGAGLKKFAANDQSAKGATIEGLN
Ga0307513_1010036713300031456EctomycorrhizaLIEIRGQIARKLEFMGQLGVKLKKFADKDHFVKGGRLWDLIG
Ga0307513_1019514213300031456EctomycorrhizaQIARKLKFWGQLGVKLTKSKAKDQTARGAKLQGPN
Ga0307513_1021977613300031456EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLKKMTAKDVSVKGAKIKGLN
Ga0307513_1024601413300031456EctomycorrhizaIEIRGQIARKLKFWGQLGVKLKKLTAEDVSVKGTKL
Ga0307513_1066254113300031456EctomycorrhizaGIRGKIARKFKFWGQLGVKSTKFASRDQSARGATL
Ga0307513_1067267413300031456EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLKKFAARDQFAKGAGL
Ga0307513_1076468013300031456EctomycorrhizaLIEIRGQIARKLKFWGQLGAKLKKFAANDQYAKGAKIEGLN
Ga0307513_1079539623300031456EctomycorrhizaLPSYLIEIRGQIARKLKFWGQLGVKLKKFAARDQFAKGAGL
Ga0307509_1000332353300031507EctomycorrhizaLIEIRGQIARKLKFWGQLAAKLKKFAANNQSAKGAKIEELN
Ga0307509_1005725613300031507EctomycorrhizaLIEIRGQIGRKLKFWGQLGAKLKKFAAKDQSAKGAALWGLN
Ga0307509_1006065733300031507EctomycorrhizaEIRGQITRKLKFWGQLGVKLTKFTAKDQSVKWAKIEGLN
Ga0307509_1015719543300031507EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLKKMIAKDVSVKDAKIKGLN
Ga0307509_1019661713300031507EctomycorrhizaLIEIKGQIARKLKFWGQLEAKLKKFAARDQSAKGAKIKGLN
Ga0307509_1029837523300031507EctomycorrhizaLIEIRGPIARKLKFWGQLGAGLKKFAPKNHSTKGATIEGLN
Ga0307509_1070903723300031507EctomycorrhizaRGKITRKLKFWSQLGAKLKKFATKDQSARGATIKGLN
Ga0307509_1091627013300031507EctomycorrhizaIEIRGQIARKLKFWGQLGAGLKKFAAKDQSAKGATIEGLD
Ga0307508_1005532023300031616EctomycorrhizaLIEIRGQIARKLKFLGQLGVKLTKFTDNDHSATGAKL
Ga0307508_1020390313300031616EctomycorrhizaLIEIRGQIARKLKFLGQLGAKLKKFAAKDQSAKGAKIEGLK
Ga0307508_1027984813300031616EctomycorrhizaLIEIRDQIARKLKFWGQLGAGLKKFAAKDQSAKGTTIEGFN
Ga0307508_1033671613300031616EctomycorrhizaEIRGQIARKLKFWGQLGAGLKKFAAKDQSAKGATIEGLD
Ga0307508_1037503413300031616EctomycorrhizaEIRGQIARKLKFWGQLGVKLTKSKAKGQSAKGAKL
Ga0307508_1041697513300031616EctomycorrhizaLIEIRGQIARKLKFWGQLGAKLKKLAARGQSAKGAKLRGLIEKHRG
Ga0307508_1073399823300031616EctomycorrhizaLIKIRGQIARTLKFWGQLGAGLKKFGAKDQSAKGATIEGLN
Ga0307514_1039206213300031649EctomycorrhizaLIEIRGQIARKLKFLGQLGVKLKKLTAKDVSVKGAKIKGLNXQNPGVK
Ga0307514_1049117813300031649EctomycorrhizaLIEIRGQIARKLKFWGQLAAKLKKFAANNQSAKGAKIKELN
Ga0307516_10005297143300031730EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLKKLTAKDVSVKGPNFRGLIDKNWG
Ga0307516_1032759833300031730EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLEKLTAKDVSVKGAKIKGLN
Ga0307516_1041260013300031730EctomycorrhizaLIEIKGQIARKLKFWGQLGAKLKKSEAKDQSAKGGKLW
Ga0307516_1053892913300031730EctomycorrhizaIEIRRQIARKLKFWGQLGVKLKKLIAMDQSAKGVRL
Ga0307516_1069138023300031730EctomycorrhizaLIEIRDKIARKLKFLGQLGVKLTKFAANDQSAKGAR
Ga0307516_1086529923300031730EctomycorrhizaLIEIRGKIAIKLKFRGQLGAKLKKFAAKDQSAKGAKI
Ga0307518_1009133013300031838EctomycorrhizaLIEIRGQIARKLKFWGQLGVKLKKLTAKDQSAKGA
Ga0307518_1021543533300031838EctomycorrhizaPSYLIEIRGQIARKLKFWGQLGVKLKKFAARDQFAKGAGL
Ga0307518_1046408113300031838EctomycorrhizaIRGKITRKLKFWGQLRVILKKFTVNDQSVKSVKQWGLN
Ga0325403_100111373300032354XylemLIKIKDKIARKSKFWSQLGVKLKKFAAKDQSAKGAELWGPN
Ga0325403_100315453300032354XylemLIEIRSQIARKLKFWGQLGAGLKKFAAKDQSAKDATIEGLN
Ga0325403_100395373300032354XylemLIEIRGQIARKLKFWGQLGAGLKKFVAKDQSAKGATIEGLN
Ga0325403_100486873300032354XylemLIEIRGQIARKLKFWGQLGAGLKKFAAKDQSAKGATIEGLN
Ga0325403_100661623300032354XylemLIEIRGQIARKLKFLDQLGVKLIKFAAKDQTAKGATIGGLN
Ga0325403_100862823300032354XylemLIEIGGQIARILKFWGQFGARLKKFAAKDQSAKGATIEGLN
Ga0325403_100997523300032354XylemLIEIRGQIARKLKFWGQLGTGLKKFAAKDQSAKGATIEGLN
Ga0325403_101125913300032354XylemLIEIRGQIARKLKFWGQLGAGLKKFAAKDQSAKGTTIEGLN
Ga0325403_101517543300032354XylemLIEIRGQIARKLNFWGQLGVKLKKFAARDQFAKGVGL
Ga0325403_101682733300032354XylemLIEIRGQIARKLKFWGQLGAGLKKFAAKDQSAKGAIIEGLN
Ga0325403_101813223300032354XylemLIEIRGQIARKLKFWGQLGTGLKKFAAKDQSAKGTTIEGLN
Ga0325403_101964943300032354XylemLIEIRGQIARKLKFWGQLGAKLKKFTAKDQSAKAPKLRGLIDKNRG
Ga0325403_102392913300032354XylemLIEIKGQIARKLKFWGQLGAGLKKFATKDQSAKSATIEGLN
Ga0325403_102753423300032354XylemLIEIRGQIARKLKFWGQLGAGLKKFVAKDQSAKGTTIEGLN
Ga0325403_103144913300032354XylemLIEIKGQIARKLKFLGQLGAGLKKFAAKDQSAKSATIEGLN
Ga0325403_103270353300032354XylemLIEIRGQIARKLKFWGQLRAGLKKFAAKDQSAKNATIEGLN
Ga0325403_105097323300032354XylemIWGQIARKLNFWGQLGAKLNKSEAKDHSAIGGKLWGFN
Ga0325403_105312323300032354XylemLIEIRGQIARKLKFWGQLGAGLKKFAAKDQSAKGATIKGLN
Ga0325403_107631033300032354XylemLIEIRGQIARKLKFWGQLGAKLKKFAANDQSAKGATIKGLN
Ga0325401_100204193300032355XylemLIEIRGQIARKLKFWGQLGVGLKKFVAKDQSAKGTTIEGLN
Ga0325401_1003090213300032355XylemLIKIKDKIARKSKFWSQLGVKLKKFAAKDQSAKGVELWGPN
Ga0325401_101433633300032355XylemLIEIRGPIARKLKFWGQLGARLKKFAAKDQSAKDTTIEGLN
Ga0325401_103421823300032355XylemLIEIRGHIARQLKFWGQLGARLKKFAAKDQSAKGTTIEGLN
Ga0325401_108942113300032355XylemIEIRGKITRKSKLWYQLRVKLKKFTINNQSAKCTRL
Ga0325401_109118953300032355XylemLIEIRGQIARKLKFWGQLGVGLKKFAAKDQSAKGTIIEGLN
Ga0325400_100990173300032374XylemLIEIRGPITRKLKFWGQLGVKLKKLTAKDQSAKGAKI
Ga0325400_114232013300032374XylemQIARKLNFWGQLGAKLNKSEAKDHSAIGGKLWGFN
Ga0325405_100167183300032389XylemLIEIKGKIARKLKFWGQLGAKFKKFAANDQSAKSAKQ
Ga0325405_100971143300032389XylemLIEIRGQIARKLKFWGQLRAALKKFAAKDQSAKDATIEGLN
Ga0325405_101180813300032389XylemLIEIRGQIARKLKFWGQLGVKMTKFTAKDQSAKDAKIRGLN
Ga0325405_106675413300032389XylemLIEIRCQIARKLKFLGQLGVKLVKFIAKDHSATGGKPWGLN
Ga0325404_100395433300032390XylemLIEIRGQIARKLKFWGQLGVKLTKFAAKDQSAKGAKIGGFN
Ga0325410_100059933300032735XylemLIEIKGQIARKLKFWGQLGAGLKKFATKDQSPKGTTIEGFN
Ga0325410_101766913300032735XylemLIEIRGQIARKLKFLGQLGVKLIKFATKDQSAKGPKIGGLT
Ga0307510_1012437313300033180EctomycorrhizaEIRGQIAKTLKFWGQLGVKLKKLTAKDVSVKDAKL
Ga0307510_1012917713300033180EctomycorrhizaLIEIRGQITRKLKFWGQLEAKLKKFAAKDQSAKGAKIEGLK
Ga0307510_1045595313300033180EctomycorrhizaLIEIRGQIVRKLKFWGQLGVKLKKMTAKDVSVKGAKIKGLN
Ga0307510_1052548713300033180EctomycorrhizaEIRGQIARKLKFWGQLGVKLTKFAAKDQYAKSAKL
Ga0307510_1059899623300033180EctomycorrhizaLFEIRGQIARKLKFWGQLGAGLKKFAAKDQSAKGATIEGLD
Ga0325419_000990_25388_255133300034389LeafLIEIRGQIARKLKFWGQLGVKLTKFTAKDQSAKGAKIRGLN
Ga0325419_002751_3020_31453300034389LeafLIEIGVQIARKLKFWGQLRAGLKKFAAKDQSAKCATIEGLN
Ga0325419_010873_4554_46793300034389LeafLIEIRGQIARKLKFLGQLGVKLTKFAANDQYAKGAKIGGLN
Ga0325419_022820_4319_44443300034389LeafLIEIRGQIARKLKFWGQLGVGLKKFTAKDQFAKGTTIEGLN
Ga0325419_023160_4257_43823300034389LeafLIEIRGQIARKLKFWGQLGAGLKKFTAKDQFAKGTTIEGLN
Ga0325419_042465_84_1973300034389LeafLIEISGQIARKLKFLGQLGAKLKKFTAKDQSAKGIKL
Ga0325419_049286_68_1933300034389LeafLIEIRGQIARKLKFWGQLGARLKKFIAKDQSAKGTTIEGLN
Ga0325419_067118_544_6573300034389LeafLIEISGQIARKLKFFGQLGAKLKKFTAKDQSAKGTKL
Ga0325419_095049_41_1543300034389LeafLIEIGGQIARKLKFWGQLGVKLKKLIAKDQSAKGAKI


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