Metagenome / Metatranscriptome Family F081935

Basic Information
Family ID	F081935
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	100 residues
Representative Sequence	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIC
Number of Associated Samples	89
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	64.04 %
% of genes near scaffold ends (potentially truncated)	42.98 %
% of genes from short scaffolds (< 2000 bps)	64.91 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Archaea (99.123 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (55.263 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (56.140 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.76% β-sheet: 39.05% Coil/Unstructured: 56.19%
Feature Viewer

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Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF06271	RDD	7.02
PF01547	SBP_bac_1	5.26
PF13416	SBP_bac_8	4.39
PF01243	Putative_PNPOx	3.51
PF01435	Peptidase_M48	2.63
PF01297	ZnuA	1.75
PF07690	MFS_1	1.75
PF00950	ABC-3	1.75
PF16864	Dimerisation2	0.88
PF11617	Cu-binding_MopE	0.88
PF13440	Polysacc_synt_3	0.88
PF02881	SRP54_N	0.88
PF04919	DUF655	0.88
PF16360	GTP-bdg_M	0.88
PF00150	Cellulase	0.88
PF00355	Rieske	0.88
PF02978	SRP_SPB	0.88
PF09180	ProRS-C_1	0.88
PF14947	HTH_45	0.88
PF04343	DUF488	0.88
PF06508	QueC	0.88
PF00072	Response_reg	0.88
PF00106	adh_short	0.88
PF00398	RrnaAD	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	7.02
COG0609	ABC-type Fe3+-siderophore transport system, permease component	Inorganic ion transport and metabolism [P]	1.75
COG4606	ABC-type enterochelin transport system, permease component	Inorganic ion transport and metabolism [P]	1.75
COG1108	ABC-type Mn2+/Zn2+ transport system, permease component	Inorganic ion transport and metabolism [P]	1.75
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.88
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	0.88
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	0.88
COG0541	Signal recognition particle GTPase	Intracellular trafficking, secretion, and vesicular transport [U]	0.88
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.88
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.88
COG0780	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, C-terminal domain, T-fold superfamily	Translation, ribosomal structure and biogenesis [J]	0.88
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	0.88
COG1491	Predicted nucleic acid-binding OB-fold protein	General function prediction only [R]	0.88
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	0.88
COG0137	Argininosuccinate synthase	Amino acid transport and metabolism [E]	0.88
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.88
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.88
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.88
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	8.77 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	7.89 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	4.39 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	4.39 %
unclassified Nitrosopumilales	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	4.39 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	0.88 %
Unclassified	root	N/A	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8691405	All Organisms → cellular organisms → Archaea	6683	Open in IMG/M
2124908021\|BSRL3_Contig_6935	All Organisms → cellular organisms → Archaea	924	Open in IMG/M
2140918002\|contig04831	All Organisms → cellular organisms → Archaea	974	Open in IMG/M
2162886007\|SwRhRL2b_contig_3890605	All Organisms → cellular organisms → Archaea	3185	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1029900	All Organisms → cellular organisms → Archaea	601	Open in IMG/M
3300002099\|JGI24808J26613_1004862	All Organisms → cellular organisms → Archaea	3553	Open in IMG/M
3300002899\|JGIcombinedJ43975_10007861	All Organisms → cellular organisms → Archaea	1725	Open in IMG/M
3300002899\|JGIcombinedJ43975_10020547	All Organisms → cellular organisms → Archaea	1061	Open in IMG/M
3300005168\|Ga0066809_10081528	All Organisms → cellular organisms → Archaea	768	Open in IMG/M
3300005186\|Ga0066676_10031343	All Organisms → cellular organisms → Archaea → TACK group	2891	Open in IMG/M
3300005186\|Ga0066676_10074184	All Organisms → cellular organisms → Archaea	2004	Open in IMG/M
3300005269\|Ga0065706_1000174	All Organisms → cellular organisms → Archaea	11752	Open in IMG/M
3300005289\|Ga0065704_10071572	All Organisms → cellular organisms → Archaea	10645	Open in IMG/M
3300005289\|Ga0065704_10733566	All Organisms → cellular organisms → Archaea	548	Open in IMG/M
3300005294\|Ga0065705_10000410	All Organisms → cellular organisms → Archaea	2211	Open in IMG/M
3300005294\|Ga0065705_10424852	All Organisms → cellular organisms → Archaea	853	Open in IMG/M
3300005558\|Ga0066698_11012403	All Organisms → cellular organisms → Archaea	527	Open in IMG/M
3300005937\|Ga0081455_10012464	All Organisms → cellular organisms → Archaea	8482	Open in IMG/M
3300006034\|Ga0066656_10086795	All Organisms → cellular organisms → Archaea	1877	Open in IMG/M
3300006049\|Ga0075417_10001524	All Organisms → cellular organisms → Archaea	6466	Open in IMG/M
3300006844\|Ga0075428_100070618	All Organisms → cellular organisms → Archaea	3817	Open in IMG/M
3300006852\|Ga0075433_10187443	All Organisms → cellular organisms → Archaea	1840	Open in IMG/M
3300006853\|Ga0075420_100088015	All Organisms → cellular organisms → Archaea	2745	Open in IMG/M
3300006871\|Ga0075434_100372229	All Organisms → cellular organisms → Archaea	1449	Open in IMG/M
3300009100\|Ga0075418_10856983	All Organisms → cellular organisms → Archaea	982	Open in IMG/M
3300009147\|Ga0114129_10533656	All Organisms → cellular organisms → Archaea	1528	Open in IMG/M
3300009147\|Ga0114129_11390623	All Organisms → cellular organisms → Archaea	866	Open in IMG/M
3300009147\|Ga0114129_11446684	All Organisms → cellular organisms → Archaea	846	Open in IMG/M
3300009147\|Ga0114129_12960873	All Organisms → cellular organisms → Archaea	560	Open in IMG/M
3300009162\|Ga0075423_11231080	All Organisms → cellular organisms → Archaea	799	Open in IMG/M
3300009162\|Ga0075423_11645152	All Organisms → cellular organisms → Archaea	691	Open in IMG/M
3300009162\|Ga0075423_12556955	All Organisms → cellular organisms → Archaea	558	Open in IMG/M
3300009793\|Ga0105077_101244	All Organisms → cellular organisms → Archaea	1612	Open in IMG/M
3300009795\|Ga0105059_1000170	All Organisms → cellular organisms → Archaea	5224	Open in IMG/M
3300009797\|Ga0105080_1019790	All Organisms → cellular organisms → Archaea	691	Open in IMG/M
3300009799\|Ga0105075_1001177	All Organisms → cellular organisms → Archaea	1833	Open in IMG/M
3300009799\|Ga0105075_1021958	All Organisms → cellular organisms → Archaea	676	Open in IMG/M
3300009800\|Ga0105069_1001341	All Organisms → cellular organisms → Archaea	1505	Open in IMG/M
3300009800\|Ga0105069_1007597	All Organisms → cellular organisms → Archaea	868	Open in IMG/M
3300009800\|Ga0105069_1020448	All Organisms → cellular organisms → Archaea	662	Open in IMG/M
3300009801\|Ga0105056_1001100	All Organisms → cellular organisms → Archaea	2196	Open in IMG/M
3300009802\|Ga0105073_1016568	All Organisms → cellular organisms → Archaea	737	Open in IMG/M
3300009803\|Ga0105065_1012008	All Organisms → cellular organisms → Archaea	923	Open in IMG/M
3300009806\|Ga0105081_1079801	All Organisms → cellular organisms → Archaea	527	Open in IMG/M
3300009809\|Ga0105089_1008523	All Organisms → cellular organisms → Archaea	1233	Open in IMG/M
3300009810\|Ga0105088_1107539	All Organisms → cellular organisms → Archaea	521	Open in IMG/M
3300009814\|Ga0105082_1040958	All Organisms → cellular organisms → Archaea	762	Open in IMG/M
3300009817\|Ga0105062_1004142	All Organisms → cellular organisms → Archaea	2041	Open in IMG/M
3300009818\|Ga0105072_1035849	All Organisms → cellular organisms → Archaea	926	Open in IMG/M
3300009818\|Ga0105072_1056217	All Organisms → cellular organisms → Archaea	754	Open in IMG/M
3300009819\|Ga0105087_1005622	All Organisms → cellular organisms → Archaea	1573	Open in IMG/M
3300009836\|Ga0105068_1113017	All Organisms → cellular organisms → Archaea	538	Open in IMG/M
3300009837\|Ga0105058_1046420	All Organisms → cellular organisms → Archaea	966	Open in IMG/M
3300009837\|Ga0105058_1104988	All Organisms → cellular organisms → Archaea	665	Open in IMG/M
3300010029\|Ga0105074_1016190	All Organisms → cellular organisms → Archaea	1210	Open in IMG/M
3300010029\|Ga0105074_1025379	All Organisms → cellular organisms → Archaea	995	Open in IMG/M
3300010304\|Ga0134088_10094634	All Organisms → cellular organisms → Archaea	1403	Open in IMG/M
3300010336\|Ga0134071_10247337	All Organisms → cellular organisms → Archaea	887	Open in IMG/M
3300012204\|Ga0137374_10001650	All Organisms → cellular organisms → Archaea	25579	Open in IMG/M
3300012204\|Ga0137374_10064700	All Organisms → cellular organisms → Archaea	3645	Open in IMG/M
3300012353\|Ga0137367_10003514	All Organisms → cellular organisms → Archaea	12690	Open in IMG/M
3300012358\|Ga0137368_10710179	All Organisms → cellular organisms → Archaea	631	Open in IMG/M
3300012360\|Ga0137375_10435900	All Organisms → cellular organisms → Archaea	1134	Open in IMG/M
3300017659\|Ga0134083_10104500	All Organisms → cellular organisms → Archaea	1119	Open in IMG/M
3300017997\|Ga0184610_1000903	All Organisms → cellular organisms → Archaea	6656	Open in IMG/M
3300018000\|Ga0184604_10000663	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	4109	Open in IMG/M
3300018027\|Ga0184605_10001504	All Organisms → cellular organisms → Archaea	7556	Open in IMG/M
3300018028\|Ga0184608_10013214	All Organisms → cellular organisms → Archaea	2863	Open in IMG/M
3300018031\|Ga0184634_10014737	All Organisms → cellular organisms → Archaea	2860	Open in IMG/M
3300018052\|Ga0184638_1002651	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	5562	Open in IMG/M
3300018053\|Ga0184626_10004658	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	5152	Open in IMG/M
3300018053\|Ga0184626_10009679	All Organisms → cellular organisms → Archaea	3757	Open in IMG/M
3300018056\|Ga0184623_10015236	All Organisms → cellular organisms → Archaea	3363	Open in IMG/M
3300018067\|Ga0184611_1011202	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2562	Open in IMG/M
3300018067\|Ga0184611_1117604	All Organisms → cellular organisms → Archaea	931	Open in IMG/M
3300018071\|Ga0184618_10453077	All Organisms → cellular organisms → Archaea	540	Open in IMG/M
3300018072\|Ga0184635_10005098	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	4225	Open in IMG/M
3300018072\|Ga0184635_10011963	All Organisms → cellular organisms → Archaea	3048	Open in IMG/M
3300018072\|Ga0184635_10073424	All Organisms → cellular organisms → Archaea	1337	Open in IMG/M
3300018073\|Ga0184624_10013093	All Organisms → cellular organisms → Archaea	2940	Open in IMG/M
3300018074\|Ga0184640_10001060	All Organisms → cellular organisms → Archaea	8050	Open in IMG/M
3300018074\|Ga0184640_10159211	All Organisms → cellular organisms → Archaea	1010	Open in IMG/M
3300018077\|Ga0184633_10339172	All Organisms → cellular organisms → Archaea	761	Open in IMG/M
3300018081\|Ga0184625_10132423	All Organisms → cellular organisms → Archaea	1299	Open in IMG/M
3300019279\|Ga0184642_1088680	All Organisms → cellular organisms → Archaea	523	Open in IMG/M
3300019873\|Ga0193700_1060172	All Organisms → cellular organisms → Archaea	582	Open in IMG/M
3300021080\|Ga0210382_10241574	All Organisms → cellular organisms → Archaea	789	Open in IMG/M
3300021510\|Ga0222621_1035562	All Organisms → cellular organisms → Archaea	1030	Open in IMG/M
3300022694\|Ga0222623_10009393	All Organisms → cellular organisms → Archaea	3534	Open in IMG/M
3300022694\|Ga0222623_10234311	All Organisms → cellular organisms → Archaea	709	Open in IMG/M
3300026324\|Ga0209470_1137456	All Organisms → cellular organisms → Archaea	1078	Open in IMG/M
3300026324\|Ga0209470_1138255	All Organisms → cellular organisms → Archaea	1074	Open in IMG/M
3300026536\|Ga0209058_1002323	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	15753	Open in IMG/M
3300026537\|Ga0209157_1077539	Not Available	1642	Open in IMG/M
3300027006\|Ga0209896_1018097	All Organisms → cellular organisms → Archaea	786	Open in IMG/M
3300027013\|Ga0209884_1000130	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	7597	Open in IMG/M
3300027027\|Ga0209844_1002688	All Organisms → cellular organisms → Archaea	1219	Open in IMG/M
3300027041\|Ga0209876_1000594	All Organisms → cellular organisms → Archaea	2161	Open in IMG/M
3300027056\|Ga0209879_1005800	All Organisms → cellular organisms → Archaea	1902	Open in IMG/M
3300027163\|Ga0209878_1006362	All Organisms → cellular organisms → Archaea	1712	Open in IMG/M
3300027169\|Ga0209897_1037284	All Organisms → cellular organisms → Archaea	702	Open in IMG/M
3300027324\|Ga0209845_1021862	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1043	Open in IMG/M
3300027379\|Ga0209842_1051251	All Organisms → cellular organisms → Archaea	747	Open in IMG/M
3300027379\|Ga0209842_1087952	All Organisms → cellular organisms → Archaea	534	Open in IMG/M
3300027560\|Ga0207981_1055738	All Organisms → cellular organisms → Archaea	723	Open in IMG/M
3300027873\|Ga0209814_10001347	All Organisms → cellular organisms → Archaea	8602	Open in IMG/M
3300027948\|Ga0209858_1000160	All Organisms → cellular organisms → Archaea	5526	Open in IMG/M
3300027948\|Ga0209858_1020998	All Organisms → cellular organisms → Archaea	587	Open in IMG/M
3300027949\|Ga0209860_1004140	All Organisms → cellular organisms → Archaea	2053	Open in IMG/M
3300027957\|Ga0209857_1032513	All Organisms → cellular organisms → Archaea	956	Open in IMG/M
3300028718\|Ga0307307_10290888	All Organisms → cellular organisms → Archaea	525	Open in IMG/M
3300028720\|Ga0307317_10206306	All Organisms → cellular organisms → Archaea	663	Open in IMG/M
3300028814\|Ga0307302_10031280	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2445	Open in IMG/M
3300030904\|Ga0308198_1028197	All Organisms → cellular organisms → Archaea	790	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.21%
Host-Associated	Host-Associated	15.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.28%
Aquatic	Environmental → Aquatic	21.93%
Plants	Host-Associated → Plants	15.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.28%
Sediment	Environmental → Aquatic → Sediment	20.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.51%
Freshwater	Environmental → Aquatic → Freshwater	1.75%

Habitat	Taxonomy	Distribution
Sand	Environmental → Terrestrial → Soil → Sand	33.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	20.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.75%
Loam	Environmental → Terrestrial → Soil → Loam	1.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	33.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	20.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.28%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	33.33%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	17.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.39%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.39%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	3.51%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	2.63%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Rhizosphere And Bulk Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Rhizosphere And Bulk Soil	0.88%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2124908021	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 Bulk Soil	Environmental	Open in IMG/M
2140918002	Rhizosphere and bulk soil microbial communities from the Great Lakes - Sample MSB1	Environmental	Open in IMG/M
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300002099	Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005269	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 Bulk Soil	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009793	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40	Environmental	Open in IMG/M
3300009795	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50	Environmental	Open in IMG/M
3300009797	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20	Environmental	Open in IMG/M
3300009799	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30	Environmental	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009802	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60	Environmental	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009806	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60	Environmental	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027013	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027027	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027041	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027163	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027169	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027948	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027949	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_03275130	2088090015	Soil	MRIERLPAPIADEQRQVKIGSYMNDTSAFWYIRKETNSERKRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDLDETGIPNISK
BSRL3_00384850	2124908021	Switchgrass Rhizosphere	MRIERLPAPIPDEQRQVKIGSYMNDTSAFWYIRKEKNSERKRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDVDESGIPNISK
MSB1_00124210	2140918002	Rhizosphere And Bulk Soil	MRIERLPAPIPDEQRQVKIGSYMNDTSAFWYIRKETNSERKRTCIICGKTASYLVYFQLDGAKLKEKYCEQCLDSWVYLDVDESGIPNISK
SwRhRL2b_0062.00000370	2162886007	Switchgrass Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPSPISEEQKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLDKWVYLAPSKSITTISK
KanNP_Total_noBrdU_T14TCDRAFT_10299001	3300000596	Soil	MRIERLPAPIPDEQRQVKIGSYMNDTSAFWYIRKETNSERKRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDLDETGIPNISK*
JGI24808J26613_10048624	3300002099	Soil	MRIERLPAPIXDEQRQVKIGSYMNDTSAFWYIRKETNSXRXRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDLDESGIPNISK*
JGIcombinedJ43975_100078613	3300002899	Soil	MRIERLPAPIADEQRQVKIGSYMNDTSAFWYIRKETNSERKRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDLDETGIPNISK*
JGIcombinedJ43975_100205473	3300002899	Soil	MRIERLPAPIADEQRQVKIGSYMNDTSAFWYIRKETNSERKRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDLDESGIPNISK*
Ga0066809_100815282	3300005168	Soil	LRFKRNYIYEIVKKEAIRIERLPAPISEEQKEVKITPYMNDTRPFWNIRKLANTERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLDKWVYHPPSDSIPTISK*
Ga0066676_100313431	3300005186	Soil	LKFKRNYKYEIIKRKAIRIERLPAPIPKEQRQVKITPYMNDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIS*
Ga0066676_100741841	3300005186	Soil	KAIRIERLPAAIPEEQREVKITPYRKDTRPFWNIRKETYSERKRICIICGQTAAYTAYFQLEGAKLKEKYCEHCLGKWVYLDVDESFPAISK*
Ga0065706_10001745	3300005269	Switchgrass Rhizosphere	MRIERLPAPIPDEQRQVKIGSYMNDTSAFWYIRKEKNSERKRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDVDESGIPNISK*
Ga0065704_100715726	3300005289	Switchgrass Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPSPISEEQKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLDKWVYLAPSKSITTISK*
Ga0065704_107335661	3300005289	Switchgrass Rhizosphere	RNYKYEIKKRKAMRIERLPAPIPDEQRQVKIGSYMNDTSAFWYIRKEKNSERKRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDVDESGIPNISK*
Ga0065705_100004101	3300005294	Switchgrass Rhizosphere	RNYKYEIKKRKAMRIERLPAPIPDEQRQVKIGSYMNDTSAFWYIRKEXNXERKRTCIIXGKTASYLVYFQXDGAKLKEKYCEQCLDSWVYLDVDESGIPNISK*
Ga0065705_104248521	3300005294	Switchgrass Rhizosphere	LRFKRNYIYEIKKRQAIRIERLPAPIPEEQRQVKITPYMNDTRAFWSIRKETYNERKRICVICGQTAAYLAFFQIDK
Ga0066698_110124031	3300005558	Soil	LKFKRNYKYEIIKRKAIRIERLPAPIPKEQRQVKISPYMNDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIS*
Ga0081455_100124648	3300005937	Tabebuia Heterophylla Rhizosphere	MRIERLPAPIPDEQRQVKIGSYMNDTSAFWYIRKETNSERKRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDVDESGIPNIT*
Ga0066656_100867951	3300006034	Soil	NYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMNDTSTFWNIRKETYSERKRTCIICGQTTAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIS*
Ga0075417_100015249	3300006049	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPAPISEEHKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLDKWVYLAPSESITTISK*
Ga0075428_1000706185	3300006844	Populus Rhizosphere	MRIERLPAPIPDEQRQVKIGSYMNDTSAFWYIRKEKNSERKRTCIICGKTASYLVYFQLDGAKLKEKYCEQCLDSWVYLDVDESGIPNISK*
Ga0075433_101874433	3300006852	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIEQLPAPITEEQKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLDKWVYLAPSESITTISK*
Ga0075420_1000880155	3300006853	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPAPISEEHKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVSYFQIDKAQIIEKYCEHCLNK
Ga0075434_1003722292	3300006871	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPAPISEEQKEVKITPYMNDTRPFWNLRKVANSERKRICIICGQTAAYVAYFQIDKAQIIEKYCEHCLNKWVYLPSSESIPTISK*
Ga0075418_108569831	3300009100	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPAPISEEQKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLNKWVYLPSSESIPTISK*
Ga0114129_105336563	3300009147	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPAPISEEQKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLDKWVYLAPSESITTISK*
Ga0114129_113906233	3300009147	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPPPISEEQKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIDKAQI
Ga0114129_114466841	3300009147	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPAPISEEQKEVKITPYMNNTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLNKWVYLPSSESIPTISK*
Ga0114129_129608731	3300009147	Populus Rhizosphere	LPAPIPEEQKEVKITPYMKDTRPFWNIKKEANSERKRICIICGQTAAYVAYFQIDKAQIVEKYCDQCLDKWVYLDLDQPFLTTSK*
Ga0075423_112310801	3300009162	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPPPISEEQKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIEKAQIIEKYCEHCLDKWVYLAPSESITT
Ga0075423_116451521	3300009162	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPAPISEEQKEVKITPYMNDTRPFWNIRKVANNERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLNKWVYLPSSESIPTISK*
Ga0075423_125569551	3300009162	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIEQLPAPITEEQKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHC
Ga0105077_1012442	3300009793	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAHIG*
Ga0105059_10001704	3300009795	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG*
Ga0105080_10197901	3300009797	Groundwater Sand	LRFKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG*
Ga0105075_10011772	3300009799	Groundwater Sand	LRFKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG*
Ga0105075_10219581	3300009799	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIIPYMKDTRTFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAHIG*
Ga0105069_10013411	3300009800	Groundwater Sand	AIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG*
Ga0105069_10075971	3300009800	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPKEQRQLKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYT
Ga0105069_10204481	3300009800	Groundwater Sand	KAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSDCVEKWVYLDLGLLHGKGRLQDSYQAHIG*
Ga0105056_10011002	3300009801	Groundwater Sand	LRFKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSDCVEKWVYLDLGLLHGKGRLQDSYQAHIG*
Ga0105073_10165681	3300009802	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIIPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGQGRLQDSYQAQIG*
Ga0105065_10120081	3300009803	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPKEQRQLKIMPYMKDTRTFWNIRKETYSERKRTCVICGQTAAYTAYFQIEGAKLMEKYCSE
Ga0105081_10798011	3300009806	Groundwater Sand	AIKIERLPAPIPKEQRQLKIMPYMKDTRAFWNIRKETYSERKRTCVICGQTAAYTAYFQIEGAKLMEKYCSECVEKWVYLDLGLLHGQGRLQDSYQAQIG*
Ga0105089_10085232	3300009809	Groundwater Sand	IKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSDCVEKWVYLDLGLLHGKGRLQDSYQAHIG*
Ga0105088_11075391	3300009810	Groundwater Sand	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHG
Ga0105082_10409582	3300009814	Groundwater Sand	LRFKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSDCV
Ga0105062_10041424	3300009817	Groundwater Sand	LRFKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCS
Ga0105072_10358492	3300009818	Groundwater Sand	AIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSDCVEKWVYLDLGLLHGKGRLQDSYQAHIG*
Ga0105072_10562172	3300009818	Groundwater Sand	KRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG*
Ga0105087_10056221	3300009819	Groundwater Sand	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIC*
Ga0105068_11130171	3300009836	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPKEQRQLKIMPYMKDTRTFWNIRKETYSERKRTCVICGQTAAYTAYFQIEGAKLMEKYCSECVEKWVYL
Ga0105058_10464202	3300009837	Groundwater Sand	FKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSDCVEKWVYLDLGLLHGKGRLQDSYQAHIG*
Ga0105058_11049881	3300009837	Groundwater Sand	EIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG*
Ga0105074_10161901	3300010029	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCVICGQTAAYTAYFQIEGAKLMEKYCSECVEKWVYLDLGLLHGQGRLQDSYQAQIG*
Ga0105074_10253791	3300010029	Groundwater Sand	RNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG*
Ga0134088_100946341	3300010304	Grasslands Soil	LKFKRNYKYEIIKRKAIRIERLPAPIPVEKRQVKITPYMNDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQRVDKGVYLDVDDSIPAIC*
Ga0134071_102473371	3300010336	Grasslands Soil	LKLKRNYKYEITKKKAIRIERLPAPIPEKQRQVKITPYMKNTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAI*
Ga0137374_1000165033	3300012204	Vadose Zone Soil	LKLKRNYKYEITKKKAIRIERLPAPIPEEQREVKITPYRKDTRPFWNIRKETYSERKRICIICGQTAAYTAYFQLEGAKLKEKYCEHCLGKWVYLDVDESIPAITK*
Ga0137374_100647002	3300012204	Vadose Zone Soil	MRIERLPAPIPEEQRQVKITPYMNDTSTFWNIRIEANIERKRICVICGQTAAFVAYFQIDKAQIIEKYCEQCLDKRVYLNVDESIRAIY*
Ga0137367_100035147	3300012353	Vadose Zone Soil	MRTERLPAPIPEEQRQVKITPYMNDTSTFWNIRIEANIERKRICVICGQTAAFVAYFQIDKAQIIEKYCEQCLDKRVYLNVDESIRAIY*
Ga0137368_107101791	3300012358	Vadose Zone Soil	KAIRIERLPAPIPEEQREVKITPYRKDTRPFWNIRKETYSERKRICIICGQTAAYTAYFQLEGAKLKEKYCEHCLGKWVYLDVDESIPAITK*
Ga0137375_104359002	3300012360	Vadose Zone Soil	MRIKRLPAPIPEEQRQVKITPYMNDTSTFWNIRIEANIERKRICVICGQTAAFVAYFQIDKAQIIEKYCEQCLDKRVYLNVDESIRAIY*
Ga0134083_101045002	3300017659	Grasslands Soil	LKFKRNYKYEIIKRKAIRIERLPAPIPKEQRQVKITPYMNDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIC
Ga0184610_10009035	3300017997	Groundwater Sediment	LRLKRNYKYEIIKRKAITIERLPAPIPVEQRQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCDQCLDKWVYLDVDDSIPAIC
Ga0184604_100006632	3300018000	Groundwater Sediment	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIC
Ga0184605_100015044	3300018027	Groundwater Sediment	LKLKRNYKYEITKKKAIRIERLPAPIPEEQREVKITPYRKDTRPFWNIRKETYSERKRICIICGQTAAYTAYFQLEGAKLKEKYCEHCLGKWVYLDVDESISAISK
Ga0184608_100132141	3300018028	Groundwater Sediment	LRLKRNYKYEIIKRKAITIERLPAPIPVEERQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCDQCLDKWVYLDVDDSIPAIC
Ga0184634_100147373	3300018031	Groundwater Sediment	LRLKRNYKYEIKKRKAIGIERLPAPIPEEQRRVKITPYMKDTGDFWNIRKETNSERKRTCVICGQTAGYIAYFQIDGAKLKEKYCSICVEKWVYLDLDQPFPSMCK
Ga0184638_10026516	3300018052	Groundwater Sediment	LPAPIPEEQRRVKITPYMKDTGDFWNIRKETNSERKRTCVICGQTAGYIAYFQIDGAKLKEKYCSICVEKWVYLDLDQPFPSMCK
Ga0184626_100046584	3300018053	Groundwater Sediment	LPAPIPEEQRRVKITPYMKDTGDFWNIRKETNSERKRTCVICGQNAGYIAYFQIDGAKLKEKYCSICVEKWVYLDLDQPFPSMCK
Ga0184626_100096794	3300018053	Groundwater Sediment	LRLKRNYKYEIIKRKAITIERLPAPIPVEERQVKITPYMKDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCDQCLDKWVYLDVDDSIPAIC
Ga0184623_100152361	3300018056	Groundwater Sediment	LRLKRNYKYEIIKRKAITIERLPAPIPVEERQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCDQCLDKWVYLDVDDSITAI
Ga0184611_10112021	3300018067	Groundwater Sediment	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYNQRKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIC
Ga0184611_11176042	3300018067	Groundwater Sediment	LRLKRNYKYEIIKRKAITIERLPAPIPVEQKQVKITPYMKDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCLDKWVYLDVDDSIPAIC
Ga0184618_104530771	3300018071	Groundwater Sediment	KAIRIERLPAPIPEEQREVKITPYRKDTRPFWNIRKETYSERKRICIICGQTAAYTAYFQLEGAKLKEKYCEHCLGKWVYLDVDESISAISK
Ga0184635_100050981	3300018072	Groundwater Sediment	LRLKRNYKYEIKKRKAIGIERLPAPIPEEQRRVKITPYMKDTGDFWNIRKQTNSERKRTCVICGQTAAYIAYFQIDGAKLKEKYCSICVEKWVYLDLDQPFPSMCK
Ga0184635_100119634	3300018072	Groundwater Sediment	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCLDKWVYLDVDDSIPAIC
Ga0184635_100734241	3300018072	Groundwater Sediment	LRLKRNYKYEVIKRKAITIERLPAPIPVEQKQVKITPYMKDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCLDKWVYLDVDDSIPAIC
Ga0184624_100130934	3300018073	Groundwater Sediment	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVD
Ga0184640_100010604	3300018074	Groundwater Sediment	LRLKRNYKYEIIKRKAITIERLPAPIPVEERQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCLDKWVYLDVDDSIPAIC
Ga0184640_101592111	3300018074	Groundwater Sediment	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVD
Ga0184633_103391721	3300018077	Groundwater Sediment	LRLKRNYKYEIIKRKAITIERLPAPIPVEERQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIC
Ga0184625_101324232	3300018081	Groundwater Sediment	LKLKRNYKYEITKKKAIRIERLPAPIPEEQREVKITPYRKDTRPFWNIRKETYSERKRICIICGQTAAYTAYFQLEGAKLKEKYCEHCLGKWVYLDVDESITAISK
Ga0184642_10886801	3300019279	Groundwater Sediment	LKLKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSI
Ga0193700_10601721	3300019873	Soil	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDK
Ga0210382_102415741	3300021080	Groundwater Sediment	YKYEITKKKAIRIERLPAPIPEEQREVKITPYRKDTRPFWNIRKETYSERKRICIICGQTAAYTAYFQLEGAKLKEKYCEHCLGKWVYLDVDESISAISK
Ga0222621_10355621	3300021510	Groundwater Sediment	LKLKRNYKYEITKKKAIRIERLPAPIPEEQREVKITPYRKDTRPFWNIRKETYSERKRICIICGQTAAYTAYFQLEGAKLKEKYCEHCLGKWVYLDVDESISAIS
Ga0222623_100093931	3300022694	Groundwater Sediment	LRLKRNYKYEVIKRKAITIERLPAPIPVEQKQVKITPYMKDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIE
Ga0222623_102343111	3300022694	Groundwater Sediment	MPEEQRQVKITPYRKDTGDFWNIRKQTNSERKRTCVICGQTAAYIAYFQIDGAKLKEKYCSICVEKWVYLDLDQPFPSMCK
Ga0209470_11374562	3300026324	Soil	LKFKRNYKYEIIKRKAIRIERLPAPIPKEQRQVKITPYMNDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIS
Ga0209470_11382552	3300026324	Soil	LKFKRNYKYEIIKRKAIRIERLPAPIPKEQRQVKISPYMNDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIE
Ga0209058_10023231	3300026536	Soil	LKFKRNYKYEIIKRKAIRIERLPAPIPKEQRQVKISPYMNDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIS
Ga0209157_10775391	3300026537	Soil	LKFKRNYKYEIIKRKAIRIERLPAPIPKEQRQVKISPYMNDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDS
Ga0209896_10180974	3300027006	Groundwater Sand	LRFKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG
Ga0209884_10001305	3300027013	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG
Ga0209844_10026882	3300027027	Groundwater Sand	LRFKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSDCVEKWVYLDLGLLHGKGRLQDSYQAHIG
Ga0209876_10005942	3300027041	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAHIG
Ga0209879_10058001	3300027056	Groundwater Sand	LRFKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAHIA
Ga0209878_10063622	3300027163	Groundwater Sand	LRFKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAHIG
Ga0209897_10372841	3300027169	Groundwater Sand	RNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSDCVEKWVYLDLGLLHGKGRLQDSYQAHIG
Ga0209845_10218622	3300027324	Groundwater Sand	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYSERKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDSIPAIC
Ga0209842_10512513	3300027379	Groundwater Sand	IIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAKLKEKYCSDCVEKWVYLDLGLLHGKGRLQDSYQAHIG
Ga0209842_10879521	3300027379	Groundwater Sand	IIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG
Ga0207981_10557382	3300027560	Soil	LRFKRNYIYEIVKKEAIRIERLPAPISEEQKEVKITPYMNDTRPFWNIRKLANTERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLDKWVYHPPSDSIPTISK
Ga0209814_1000134713	3300027873	Populus Rhizosphere	LRFKRNYIYEIVKKEAIRIERLPAPISEEHKEVKITPYMNDTRPFWNIRKVANSERKRTCIICGQTASYVAYFQIDKAQIIEKYCEHCLDKWVYLAPSESITTISK
Ga0209858_10001603	3300027948	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIIPYMKDTRTFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLHGKGRLQDSYQAPIG
Ga0209858_10209981	3300027948	Groundwater Sand	KRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIIPYMKDTRAFWNIRKETYSERKRTCIICGQTAAYTAYFQIEGAKLKEKYCSECVEKWVYLDLGLLQGKGRLQDSYQAHIG
Ga0209860_10041403	3300027949	Groundwater Sand	LRFKRNYKYEIIKRKAIKIERLPAPIPEEQRQVKIMPYMKDTSTFWNIRKETYSERKRTCIICGQTATYTAYFQIEGAE
Ga0209857_10325131	3300027957	Groundwater Sand	LRLKRNYKYEIIKRKAIKIERLPAPIPKEQRQLKIMPYMKDTRTFWNIRKETYSERKRTCVICGQTAAYTAYFQIEGAKLMEKYCSECVEKW
Ga0307307_102908882	3300028718	Soil	LKLKRNYKYEITKKKAIRIERLPAPIPEEQREVKITPYRKDTRPFWNIRKETYSERKRICIICGQTAAYTAYFQLEGAKL
Ga0307317_102063061	3300028720	Soil	LRLKRNYKYEVIKRKAITIERLPAPIPVEQRQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCDQCLDKWVYLDVDDSIPAIC
Ga0307302_100312801	3300028814	Soil	LKFKRNYKYEIIKRKAIRIERLPAPIPEEQRQVKITPYMKDTSTFWNIRKETYSQRKRTCIICGQTAAYVAYFQIDKARIIEKYCEQCVDKWVYLDVDDS
Ga0308198_10281971	3300030904	Soil	LKLKRNYKYEITKKKAIRIERLPAPIPEEQREVKITPYRKDTRPFWNIRKETYSERKRICIICGQTAAYTAYFQLEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081935

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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