Metagenome Family F081903

Basic Information
Family ID	F081903
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	49 residues
Representative Sequence	MKQSQRIVKNAVFGIGASLIGGLVYLATVLTIARMVSVVEFGKYSFVL
Number of Associated Samples	103
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.11 %
% of genes near scaffold ends (potentially truncated)	97.37 %
% of genes from short scaffolds (< 2000 bps)	94.74 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (20.175 % of family members)
Environment Ontology (ENVO)	Unclassified (35.088 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.509 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1ICChiseqgaiiDRAFT_06443691 2ICChiseqgaiiFebDRAFT_111157691 3F14TC_1043958652 4F14TC_1050572671 5JGI1027J11758_126845532 6JGI1027J12803_1033561663 7JGI1027J12803_1078277022 8JGI10216J12902_1062368652 9JGI10216J12902_1070882971 10F14TB_1017943831 11JGIcombinedJ43975_100002981 12Ga0062595_1006785721 13Ga0062591_1015583031 14Ga0062591_1027087542 15Ga0066677_103798621 16Ga0066677_104684802 17Ga0066678_104503822 18Ga0065705_106197782 19Ga0070659_1005616391 20Ga0070708_1020559401 21Ga0066686_100281734 22Ga0066682_101696222 23Ga0066687_101510912 24Ga0070706_1014859192 25Ga0070707_1001917263 26Ga0070699_1010687662 27Ga0066701_102579352 28Ga0066695_101964622 29Ga0066694_101980371 30Ga0066694_102523921 31Ga0066708_100755493 32Ga0066691_103146222 33Ga0080027_101552761 34Ga0066652_1007156412 35Ga0075424_1015215672 36Ga0079219_112584811 37Ga0066710_1010486621 38Ga0099830_106039502 39Ga0099827_101721471 40Ga0066709_1010089521 41Ga0099792_106194962 42Ga0126374_111787622 43Ga0126373_103541222 44Ga0126370_121634511 45Ga0126377_123535821 46Ga0105239_133908151 47Ga0126381_1019965461 48Ga0134122_111312012 49Ga0137364_101599591 50Ga0137383_112576441 51Ga0137365_102162462 52Ga0137378_110611821 53Ga0150985_1029693721 54Ga0137370_101734701 55Ga0137366_105270112 56Ga0137396_105814591 57Ga0137396_112567102 58Ga0137404_113137242 59Ga0137407_100258701 60Ga0126375_116773282 61Ga0164301_103374202 62Ga0134077_105244181 63Ga0134087_100306263 64Ga0134087_102771301 65Ga0120132_11298651 66Ga0134081_100280513 67Ga0157380_130835841 68Ga0167628_10893002 69Ga0134072_101749831 70Ga0132257_1026404392 71Ga0132257_1030273913 72Ga0134074_10563492 73Ga0163161_109515332 74Ga0184604_103751212 75Ga0184608_100990231 76Ga0184624_104758751 77Ga0184625_104863801 78Ga0066655_105001421 79Ga0066655_105011631 80Ga0066667_111121831 81Ga0066662_103833061 82Ga0066669_121598941 83Ga0193701_10084772 84Ga0193727_11940102 85Ga0193743_12002091 86Ga0210381_103111631 87Ga0224452_11248032 88Ga0207666_10069991 89Ga0207696_12025972 90Ga0207684_111485432 91Ga0207649_102988222 92Ga0207646_109463622 93Ga0207646_111981562 94Ga0207704_119627011 95Ga0207691_101871803 96Ga0207703_102963521 97Ga0207683_101276983 98Ga0209863_100999862 99Ga0209153_11797102 100Ga0209154_11316222 101Ga0209471_10801921 102Ga0209266_12896252 103Ga0257168_10959881 104Ga0209474_101461792 105Ga0209701_102911731 106Ga0209283_101890122 107Ga0137415_109362761 108Ga0307290_101911751 109Ga0307310_102650261 110Ga0307278_100518043 111Ga0170824_1224870332 112Ga0272433_101322651 113Ga0315288_110627572 114Ga0315286_116610401
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1ICChiseqgaiiDRAFT_06443691 2F14TC_1043958652 3F14TC_1050572671 4JGI1027J12803_1033561663 5JGI10216J12902_1062368652 6JGI10216J12902_1070882971 7Ga0066682_101696222 8Ga0066695_101964622 9Ga0066708_100755493 10Ga0075424_1015215672 11Ga0099827_101721471 12Ga0126374_111787622 13Ga0120132_11298651 14Ga0167628_10893002 15Ga0224452_11248032 16Ga0207646_111981562 17Ga0209153_11797102 18Ga0272433_101322651 19Ga0315286_116610401
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48 1Ga0066691_103146222 2ICChiseqgaiiFebDRAFT_111157691 3JGI10216J12902_1070882971 4Ga0062595_1006785721 5Ga0062591_1015583031 6Ga0070699_1010687662 7Ga0066708_100755493 8Ga0080027_101552761 9Ga0075424_1015215672 10Ga0126374_111787622 11Ga0126373_103541222 12Ga0137396_105814591 13Ga0137396_112567102 14Ga0134087_100306263 15Ga0157380_130835841 16Ga0184608_100990231 17Ga0184624_104758751 18Ga0207649_102988222 19Ga0207683_101276983 20Ga0209474_101461792 21Ga0315288_110627572
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.58% β-sheet: 0.00% Coil/Unstructured: 43.42%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF02321	OEP	85.09
PF01943	Polysacc_synt	5.26
PF13440	Polysacc_synt_3	0.88
PF01583	APS_kinase	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	170.18
COG0529	Adenylylsulfate kinase or related kinase	Inorganic ion transport and metabolism [P]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.51 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	35.09 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.51 %
Unclassified	root	N/A	0.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.26 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	35.09 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.26 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	1.75 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.88 %
Unclassified	root	N/A	0.00 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	32.46 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.26 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.88 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1.75 %
Unclassified	root	N/A	0.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	32.46 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.26 %
Methylosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylosarcina	1.75 %
Unclassified	root	N/A	0.00 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	32.46 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.26 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.88 %
Methylosarcina fibrata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylosarcina → Methylosarcina fibrata	1.75 %
Unclassified	root	N/A	0.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	32.46 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0644369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	626	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11115769	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	626	Open in IMG/M
3300000559\|F14TC_104395865	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300000559\|F14TC_105057267	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1116	Open in IMG/M
3300000789\|JGI1027J11758_12684553	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1077	Open in IMG/M
3300000955\|JGI1027J12803_103356166	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	761	Open in IMG/M
3300000955\|JGI1027J12803_107827702	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	843	Open in IMG/M
3300000956\|JGI10216J12902_106236865	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300000956\|JGI10216J12902_107088297	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300001431\|F14TB_101794383	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M

Showing 1 to 10 of 114 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.72%
Host-Associated	Host-Associated	12.28%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	7.02%
Plants	Host-Associated → Plants	12.28%
Terrestrial	Environmental → Terrestrial	80.70%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	2.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.14%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.88%
Sediment	Environmental → Aquatic → Sediment	4.39%
Soil	Environmental → Terrestrial → Soil	79.82%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.63%
Lake	Environmental → Aquatic → Freshwater → Lake	1.75%
Loam	Environmental → Terrestrial → Soil → Loam	10.53%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.63%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.63%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.75%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	26.32%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.39%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.26%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.51%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.88%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.75%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	20.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.14%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.26%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.04%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M

Showing 1 to 10 of 103 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_06443691	3300000033	Soil	MKQSQRIVKNAVFGISASFIGNLLYLAMVLTIAHSVTVVEFGKYS
ICChiseqgaiiFebDRAFT_111157691	3300000363	Soil	MKQSQRIVKNAVFGISASFIGNLLYLAMVLTIAHSVTVVEFGKYSFVLAFAVFFQLVADS
F14TC_1043958652	3300000559	Soil	MKQSQRIVKNAVVGIAAGVIGGVVYLATTIAIAHNKNVSIAEFGK
F14TC_1050572671	3300000559	Soil	MKQSQRIVKNAFFGIASSVIGGVVYLATILIIAHAVSITEFGKYSFVLAFAMF
JGI1027J11758_126845532	3300000789	Soil	MKQSQRIVKNAVFGIGGSVIGSLVYLATVVIIAHSVSVREFGKYSF
JGI1027J12803_1033561663	3300000955	Soil	MKQSQRIVKNAVFGIGASLIGSLVYLATILTIARMVSVVEFGKYSFVLAF
JGI1027J12803_1078277022	3300000955	Soil	MKQSQRIVKNAVFGISAAFIGSLLHLAMVLTIAHSVSVVEFGK
JGI10216J12902_1062368652	3300000956	Soil	MKQSQRIVKNAIFGIGGSAIGGLIYLATVLKIARNVSVTEFG
JGI10216J12902_1070882971	3300000956	Soil	VKQSQRIVKNAIFGIGGSGIGGLIYLATVLKIARSVSVTEFGKYSFVLAFAMFVSNVAD
F14TB_1017943831	3300001431	Soil	MKQSQRIVKNAFFGIASSVIGGVVYLATILIIAHAVSITEF
JGIcombinedJ43975_100002981	3300002899	Soil	MKQSQRIVKNAFFGIASSVIGGVVYLATILIIAHAVSITEFGKYS
Ga0062595_1006785721	3300004479	Soil	MKQSQRIVKNAFFGIASSFIGGVVYLATILIIAHAVSVTEFGEYSFVLAFAMFVSNI
Ga0062591_1015583031	3300004643	Soil	MKQSQRIVKNAVFGIASSVIGGLVYLATILTIAHAVSITEFGKYSFVLAFAMFVSNIADS
Ga0062591_1027087542	3300004643	Soil	MKQSQRIVKNAVFGISASFIGNLLYLAMVLTIAHSVTVVEFGKYSFVLA
Ga0066677_103798621	3300005171	Soil	MKQSQRIVKNAVFGIGAAVIGGLLYLATILTIAHSVSVADFGKYSF
Ga0066677_104684802	3300005171	Soil	VKQAQRIVKNAIFGIGGSAIGGLIYLATVLKIARSVSVTEFGKYSFVLAFAMFVSNVADSGL
Ga0066678_104503822	3300005181	Soil	MKQSQRIVKNAVFGIGASLVGGLVYLATILTIARMVSVVEFGKYSFVLAFAMFFQLLADAGL
Ga0065705_106197782	3300005294	Switchgrass Rhizosphere	MKQSQRIVKNAVFGILASLISGLVYLATVMIIAHKVSVVEFGKYSF
Ga0070659_1005616391	3300005366	Corn Rhizosphere	MKQSQRIVKNAVVGIAAGVIGGLVYPATTIVIAHNKHVSVAEFGEYNW
Ga0070708_1020559401	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKQSQRIVKNAVFGISASFIGSLLHLAMVLTVAHSVSVVEFGKYSFVLAF
Ga0066686_100281734	3300005446	Soil	MKQSQRIVKNAFFGIGGSVIGGLVYLATVLIIAHAVSVREF
Ga0066682_101696222	3300005450	Soil	MKQSQRIVKNSIVGIAAGVIGGLGYLATTVVIARNPHVSIAEFGEYQW
Ga0066687_101510912	3300005454	Soil	MKQSQRIVKNALFGIASSVIGGVVYFATIVTIARAVSVTEFGKYSFVLAFAMF
Ga0070706_1014859192	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKQSQRIVKNAVFGIGGSVIGSVVYLVTVLIIAHSVSVREFG
Ga0070707_1001917263	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKQSQRIVKNAVFGIGGSVVGSAVYLATVLIIAHSVSVREFGKYSFV
Ga0070699_1010687662	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKQSQRIVKNAVFGIGGSVVGSAVYLATVLIIAHSVSVREFGKYSFVLAFAMFVSNVADSGLPRM
Ga0066701_102579352	3300005552	Soil	MKQSQRIVKNAVFGISAAFIGSLLHLAMVLTIAHSVSVVEFGKYSFVL
Ga0066695_101964622	3300005553	Soil	VDSMKQSQRIVKNAVFGIGASLVGGLVYLATVLTIARMVSVVEF
Ga0066694_101980371	3300005574	Soil	MKQSQRIVKNAVFGIGAAVIGGLLYLATILTIAHSVSVTEFGK
Ga0066694_102523921	3300005574	Soil	MKQSQRIVKNAVFGILASFIGGLVYLATVMIIAHQVSVVEF
Ga0066708_100755493	3300005576	Soil	MEVDSMKQSQRIVKNAFFGIASSVIGGLVYFATILIIARSVSLTEFGKYSFVL
Ga0066691_103146222	3300005586	Soil	MKQSQRIVKNAVFGIGASLIGGLVYLATVLTIARMVSVVEFGKYSFVL
Ga0080027_101552761	3300005993	Prmafrost Soil	MKQSQRIVKNAVFGIAASIIGGAVYLATILTIAHKVSVVEFGKYSFVLAFAMFFQLVAD
Ga0066652_1007156412	3300006046	Soil	MKQSQRIVKNALFGIGSSVIGGVVYLATILVIAHAVSVTEFGKYSFVLAFAMF
Ga0075424_1015215672	3300006904	Populus Rhizosphere	MKQSQRIVKNAVVGVLAGVIGGLVYLATTIVIARNKHVAVAEFGEYQWVLSFAMI
Ga0079219_112584811	3300006954	Agricultural Soil	MKQSQRIVKNAVFGVGASLIGGLVYLITVLTIARMVSVVEFGEYSF
Ga0066710_1010486621	3300009012	Grasslands Soil	MKQSQRIVKNAVFGVGASLIGGAVYFATVLTIARMVSVVEFGKYSFVLAFAMFFQLLADA
Ga0099830_106039502	3300009088	Vadose Zone Soil	MKQSQRIVKNAVFGIGASLVGGLVYLATVLTIARMVSVVEFG
Ga0099827_101721471	3300009090	Vadose Zone Soil	MKQSQRIVKDAVFGVGAGLIGGAVYLATVLTIARMVSVVEFGKYSFVLAFAMFFQLLADA
Ga0066709_1010089521	3300009137	Grasslands Soil	MKQSQRIVKNAVFGVGASLIGGAVYLATVLTIARMVSVVEFGKYSFV
Ga0099792_106194962	3300009143	Vadose Zone Soil	MKQSQRIVKNALFGIGSSVIGGVVYLATILTIAHAVSVTEFGKYSFVLAFAMF
Ga0126374_111787622	3300009792	Tropical Forest Soil	MKQSQRIVKNAVVGIVAGLVGGLVYLFTLVAIARKPHVTVPEFGEYQWVLTF
Ga0126373_103541222	3300010048	Tropical Forest Soil	MKQSQRIVKNSIIGIAAGVIGGLVFLATTVAIARNPHVSIAEFGEYQWVLAFAM
Ga0126370_121634511	3300010358	Tropical Forest Soil	MKQSQRIVKNSIVGVAAGVIGGLVYLATTVAIARNAHVSIAEFGEY
Ga0126377_123535821	3300010362	Tropical Forest Soil	MKQSQRIVKNAVFGIGASLIGGLVYLATVLTIARMVSVVEFG
Ga0105239_133908151	3300010375	Corn Rhizosphere	MKQSQRIVKNAVVGVAAGVIGGLVYLATTIAIARNHNVSLVEFGKY
Ga0126381_1019965461	3300010376	Tropical Forest Soil	MKQSQRIVKNAVFGIGASLLGGLVYLVTVLTIARMVSVVEFGEYSFVLAFAMFFQLLAD
Ga0134122_111312012	3300010400	Terrestrial Soil	MKQSQRIVKNAVVGIAAGVIGGLVYLATTIAIARNPHVSVPEFGKY
Ga0137364_101599591	3300012198	Vadose Zone Soil	MKQSQRIFKTAVFGIGAAVIGGLLYLATILTIAHSVSVTEFGKYSFVLA
Ga0137383_112576441	3300012199	Vadose Zone Soil	MKQSQRIVKNAVFGISASFIGSLILLAMVLTIAHSLTVVEFGK
Ga0137365_102162462	3300012201	Vadose Zone Soil	VKQAQRIVKNAIFGIGGSAIGGLIYLATVLKIARSVSVTEFGKYSFVLAFAMFVS
Ga0137378_110611821	3300012210	Vadose Zone Soil	MKQSQRIVKNALFGIGSSVIGGVVYLATILTIAHAVSVTEFGKYS
Ga0150985_1029693721	3300012212	Avena Fatua Rhizosphere	MKQSQRIVKNAVFGVGASLIGGLVYLATVLTIARMVSVVEFGKYSFVLAFAMFFQLLADA
Ga0137370_101734701	3300012285	Vadose Zone Soil	MKQSQRIVKNAVFGVGASLIGGAVYLATVLTIARMVSVVEFGEYSFVLAFAMFFQLLAD
Ga0137366_105270112	3300012354	Vadose Zone Soil	MKQSQRIVKNAVFGVGASLIGGAVYLATVLTIARMVSVVEFGKYSFVLAFAMFF
Ga0137396_105814591	3300012918	Vadose Zone Soil	MKQSQRIVKNAVFGIGAAVIGGLLYLATILTIAHSVSVADFGKYSFVLAFAMFVSNVADSGLP
Ga0137396_112567102	3300012918	Vadose Zone Soil	MKQSQRIVKNALFGIASSVIGGVVYLATIVTFARAVSVTEFGKYSFVLAFAMFVSNIA
Ga0137404_113137242	3300012929	Vadose Zone Soil	MKQSQRIVKNAVFGIGASLIGGLVYLATVLTIARMVSVV
Ga0137407_100258701	3300012930	Vadose Zone Soil	VKQAQRIVKNAIFGIGGSAIGGLIYLATVLKIARSVSVTEFGKYSFVLAFAMFVSNVADS
Ga0126375_116773282	3300012948	Tropical Forest Soil	MKQSQRIVKNAVFGIGASLLGGLVYLVTVLTIARMVS
Ga0164301_103374202	3300012960	Soil	MKQSQRIVKNAVVGVAAGVIGGLVYLATTIAIARNHNVSLAEFG*
Ga0134077_105244181	3300012972	Grasslands Soil	MKQSQRIVKNAVFGIGASLIGGLVYLITVLTIARMVSVVEFGKYSFVLAFAM
Ga0134087_100306263	3300012977	Grasslands Soil	MKQSQRIVKNAVFGIGASLVAGFVYLATILIIARMVSVVEFGK
Ga0134087_102771301	3300012977	Grasslands Soil	MKQSQRIVKNAVFGIAASLIAGLVYLATVLTIARMVSVVEFGKYSFVLAFAMF
Ga0120132_11298651	3300013832	Permafrost	MKQSQRIVKNAVFGIAASLIGGLVYLATILTIAHKVS
Ga0134081_100280513	3300014150	Grasslands Soil	VKQAQRIVKNAIFGIGGSAIGGLIYLATVLKIARSVSVTEFGKYSFVLAFAM
Ga0157380_130835841	3300014326	Switchgrass Rhizosphere	MKQSQRIVKNAVFGILASLISGLVYLATVMIIAHKVSVVEFGKYSFVLAFAIFFQLVA
Ga0167628_10893002	3300015165	Glacier Forefield Soil	MKQSQRIVKNAVLGVAAGVVGGLVYLATTIVIARNHNVSL
Ga0134072_101749831	3300015357	Grasslands Soil	MKQSQRIVKNAVFGIGASLIGGLVYLVTVLIIARMVSVVEFGE
Ga0132257_1026404392	3300015373	Arabidopsis Rhizosphere	MKQSQRIVKNAVLGIAASVIGGLVYLATVLTIAHKVSVVEFGKYSFVLAFA
Ga0132257_1030273913	3300015373	Arabidopsis Rhizosphere	MKQSQRIVKNAVVGIAAGVIGGLVYLATTIVIAHNKHVSVA
Ga0134074_10563492	3300017657	Grasslands Soil	MKQSQRIVKNAVFGIGASLVAGLVYLATILIIARMVSVVEFGKYSFVLAFALFFQLVA
Ga0163161_109515332	3300017792	Switchgrass Rhizosphere	MKQSQRIVKNAVVGVAAGVIGGLVYLATTIAIARNHNVSLAEFG
Ga0184604_103751212	3300018000	Groundwater Sediment	MKQSQRIVKNAVIGVVAGVIGGLVYLATTIAIARNHNVSIAEF
Ga0184608_100990231	3300018028	Groundwater Sediment	MKQSQRIVKNAFFGIGGSVIGGLVYLATILIIAHAVSVREFGKYSFVLAFAM
Ga0184624_104758751	3300018073	Groundwater Sediment	MKQSQRIVKNAVVGVAAGVIGGLVYLATTIAIARNHNVSLVEFGKYQWVLAFAMI
Ga0184625_104863801	3300018081	Groundwater Sediment	MKQSQRIVKNAIFGIGGSAIGGLIYLATVLKIARTVSVTEFGKYSFVLAFAM
Ga0066655_105001421	3300018431	Grasslands Soil	MKQSQRIVKNAVFGVGASLIGGAVYLATVLTIARMVSVVEFGKYSFVLAFAMFFQ
Ga0066655_105011631	3300018431	Grasslands Soil	MKQSQRIVKNAVFGIGAAVIGGLLYLATILTIAHS
Ga0066667_111121831	3300018433	Grasslands Soil	MKQSQRIVKNAVFGIGASLVAGLVYLATILIIARMVSVVEFGKYSFVLAFALFF
Ga0066662_103833061	3300018468	Grasslands Soil	MKQSQRIVKNAVFGVGASLIGGAVYLATVLTIARMVSVVEFGKYSFVLA
Ga0066669_121598941	3300018482	Grasslands Soil	MKQSQRIVKNAVFGIASSVIGGLVYLATILIIAHAVSVTEFGKYSFVLAF
Ga0193701_10084772	3300019875	Soil	MKQSQRIVKNAVFGIGAAVIGGLLYLATILTIAHSVSVTEFGKYSFVLAFAMFVSNVADSGFR
Ga0193727_11940102	3300019886	Soil	VKQSQRIVKNAIFGIGGSAIGGLIYLATVLKIARSVSVAE
Ga0193743_12002091	3300019889	Soil	VDSMKQSQRIVKNAVFGIGASLVGGLVYLATIVTIARMVSVVEFGKYSFVL
Ga0210381_103111631	3300021078	Groundwater Sediment	VKQSQRIVKNAIFGIGGSAIGGLIYLATVLKIARSV
Ga0224452_11248032	3300022534	Groundwater Sediment	MEVDSMKQSQRIVKNAVFGILASLVAGLVYLATVMIIAHKVSVVEFGKYSCV
Ga0207666_10069991	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MKQSQRIVKNAVVGVAAGVIGGLVYLATTIAIARN
Ga0207696_12025972	3300025711	Switchgrass Rhizosphere	MKQSQRIVKNAVFGILASLISGLVYLATVMIIAHKVSVVEFGKYSFVLA
Ga0207684_111485432	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKQSQRIVKNALFGIGSSVIGGVVYLATILTIAHAVSVTEFGKYSFVLAFAM
Ga0207649_102988222	3300025920	Corn Rhizosphere	MKQSQRIVKNAVVGIAAGVIGGLVYLATTIVIAHNKHVSVAEFGEYNWVLA
Ga0207646_109463622	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKQSQRIVKNAVFGIGASLVGGLVYLATVLTIARMVSVVEFGKYSFVLAFAMFFQLL
Ga0207646_111981562	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKQSQRIVKNAVFGIGGSVIGSVVYLVTVLIIAHSVSV
Ga0207704_119627011	3300025938	Miscanthus Rhizosphere	MKQSQRIVKNAVFGILASLISGLVYLATVMIIAHKVSVVEFGKYSFVLAFAIFFQLV
Ga0207691_101871803	3300025940	Miscanthus Rhizosphere	MKQSQRIVKNAVFGILASLISGLVYLATVMIIAHKVSVVEFGKYSFVLAFAIFFQLVADAGLP
Ga0207703_102963521	3300026035	Switchgrass Rhizosphere	MKQSQRIVKNAVAGVIAGVVGGLVYLLTTVAIARNA
Ga0207683_101276983	3300026121	Miscanthus Rhizosphere	MKQSQRIVKNAVAGVIAGVVGGLVYLLTTVAIARNAHVSLAQFGEYQW
Ga0209863_100999862	3300026281	Prmafrost Soil	MKQSQRIVKNAVFGIAASIIGGAVYLATILTIAHKVSVVEFGKYSFVLAFAMFFQLVADS
Ga0209153_11797102	3300026312	Soil	MEVDSMKQSQRIVKNALFGITSSVIGGLVYFATIL
Ga0209154_11316222	3300026317	Soil	MKQSQRIVKNALFGIASSVIGGVVYFATIVTIARAVSVTEFGKYSFVLAFAM
Ga0209471_10801921	3300026318	Soil	MKQSQRIVKNAVFGVGASLIGGAVYLATVLTIARMVSVVEFGKYSFVLAFAMFFQLLADA
Ga0209266_12896252	3300026327	Soil	MKQSQRIVKNAVFGIGASLIGGLVYLVTVLIIARMVSVVEFGEYSFVLAFAMFFQLLA
Ga0257168_10959881	3300026514	Soil	MKQSQRIVKNAVFGIGASLVGGLVYLATVLTIARMVSVVEFGKYSFVLAF
Ga0209474_101461792	3300026550	Soil	MKQSQRIVKNALFGIGSSVIGGVVYLATILVIAHAVSVTEFGKYSFVL
Ga0209701_102911731	3300027862	Vadose Zone Soil	MKQSQRIVKNAVFGIGASLVGGLVYLATVVTIART
Ga0209283_101890122	3300027875	Vadose Zone Soil	MKQSQRIVKNAVFGIGASLVGGLVYLATVLTIARMVSVVEFGKYSFV
Ga0137415_109362761	3300028536	Vadose Zone Soil	MKQSQRIVKNAVFGIGASLVGGLVYLATILTIARMVSVVEFGKYSF
Ga0307290_101911751	3300028791	Soil	MKQSQRIVKNAVFGIGAAVTGGLLYLATILTIAHSVSVADFGKYSFVLAFAM
Ga0307310_102650261	3300028824	Soil	MKQSQRIVKNAVFGIGAAVTGGLLYLATILTIAHSVSV
Ga0307278_100518043	3300028878	Soil	MKQSQRIVKNAVFGIGAAVIGGLLYLATILTIAHSVSVTEFGKYSFVLAFAMFVSNVADS
Ga0170824_1224870332	3300031231	Forest Soil	MKQSQRIVKNAVVGIAAGVIGGLTYLATTIAIAHNHNVSL
Ga0272433_101322651	3300031450	Rock	MKQSQRIVKNAVSGVAASILGGVVYFFTISIIAHS
Ga0315288_110627572	3300031772	Sediment	MKQSQRIVKNAVLGIASSVIGGAVYLATVLTIAHQVSVVEFGKYSFVLAFGMFFQLVADAGL
Ga0315286_116610401	3300032342	Sediment	MKQSQRIVKNAVLGIAASVIGGAVYLATVLTIAHQVSVVEFGKYSFVLAFGMFFQLVADAGLPRMMI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081903

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences