Metagenome / Metatranscriptome Family F081867

Overview

Basic Information

• Family ID: F081867
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 114
• Average Sequence Length: 66 residues
• Representative Sequence: MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWSTGGGESNGLSMIIFDSEENARAAG
• Number of Associated Samples: 103
• Number of Associated Scaffolds: 114

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 99.12 %
• % of genes near scaffold ends (potentially truncated): 95.61 %
• % of genes from short scaffolds (< 2000 bps): 97.37 %
• Associated GOLD sequencing projects: 100
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (51.754 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.790 % of family members)
• Environment Ontology (ENVO): Unclassified (21.930 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (57.895 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 17.02%
  β-sheet: 31.91%
  Coil/Unstructured: 51.06%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF06803	DUF1232	3.51
PF00293	NUDIX	2.63
PF00248	Aldo_ket_red	2.63
PF02803	Thiolase_C	1.75
PF04828	GFA	1.75
PF03575	Peptidase_S51	1.75
PF07676	PD40	1.75
PF12681	Glyoxalase_2	1.75
PF07883	Cupin_2	1.75
PF01850	PIN	0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	3.51
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	1.75
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.75
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.88
COG0809	S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)	Translation, ribosomal structure and biogenesis [J]	0.88
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	0.88
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.88
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.88
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.88
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.88

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.75 %
Unclassified	root	N/A	48.25 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.75 %
Unclassified	root	N/A	48.25 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.75 %
Unclassified	root	N/A	48.25 %

Level 4

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.11 %
Unclassified	root	N/A	48.25 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.88 %
Unclassified	root	N/A	48.25 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.70 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.75 %
Unclassified	root	N/A	48.25 %

Level 7

Name	Rank	Taxonomy	Distribution
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.88 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.88 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.88 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.51 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.75 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.88 %
Unclassified	root	N/A	48.25 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	21.93 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.88 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.93 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.88 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.88 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.51 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.88 %
Unclassified	root	N/A	48.25 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.75 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.93 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.88 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.88 %
Lentzea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea	1.75 %
Longimycelium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.88 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.75 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Unclassified	root	N/A	48.25 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.88 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.93 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.88 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.88 %
Lentzea jiangxiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea jiangxiensis	1.75 %
Longimycelium tulufanense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	0.88 %
Mesorhizobium sp. BH1-1-5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. BH1-1-5	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %
Pseudonocardia alaniniphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia alaniniphila	0.88 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.75 %
Streptomyces apricus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces apricus	0.88 %
Unclassified	root	N/A	48.25 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2189573000|GPBTN7E02G99VR	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528
3300000597|AF_2010_repII_A1DRAFT_10112753	Not Available	666
3300001537|A2065W1_10139205	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1530
3300004114|Ga0062593_103063229	Not Available	535
3300004479|Ga0062595_102541803	All Organisms → cellular organisms → Bacteria	512
3300004643|Ga0062591_100727770	Not Available	902
3300004643|Ga0062591_100743461	Not Available	895
3300004643|Ga0062591_100935287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	817
3300005093|Ga0062594_100721513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	904
3300005166|Ga0066674_10146425	Not Available	1113

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.84%
Host-Associated	Host-Associated	13.16%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	4.39%
Plants	Host-Associated → Plants	13.16%
Terrestrial	Environmental → Terrestrial	82.46%

Category

Habitat	Taxonomy	Distribution
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.53%
Sediment	Environmental → Aquatic → Sediment	4.39%
Soil	Environmental → Terrestrial → Soil	80.70%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.88%
Loam	Environmental → Terrestrial → Soil → Loam	7.02%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.39%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.39%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.39%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.39%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.88%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.88%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	6.14%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.63%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.39%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.02%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_09269620	2189573000	Grass Soil	MHALVVRVTIHNADATGEVLRGEVVPQVTAAPGFKAGYWTWSTGGELNGLSMIIFDSEE
AF_2010_repII_A1DRAFT_101127531	3300000597	Forest Soil	MHALVVRVTIHNTDRTREVLNSQVVPQVSGAPGFKTGHWTWATGGGETNGLSMIIFDSEENARAAGDRIKA
A2065W1_101392051	3300001537	Permafrost	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFDTGYWTWSTGGGELDGLSMIIFDSEENASAAGDRI
Ga0062593_1030632291	3300004114	Soil	MHALVTRVTIHNADATREALNSQVVPGVSGAPGFKTGYWTWPTGGAASNGLAMMIFDSEENARAAG
Ga0062595_1025418032	3300004479	Soil	MHALVVRVTIHNADRTRELLNSQVVPQVSGAPGFKTGYWTWPTGGGDLNGLSMIIFDSEENARAAG
Ga0062591_1007277702	3300004643	Soil	MHALVVRAAIHNADRTREVLKSRIVPLASGAPGFKAGYWTWPTGTGELNVLAMIIFDSEENARAAGDR*
Ga0062591_1007434612	3300004643	Soil	MHALVVRVTLHDADRAREALNSRVVPGVSSSPGFKSGHWTWSEDQSNGLTMIIFDS
Ga0062591_1009352872	3300004643	Soil	MHALVTHVTIHDADRTRELLNSQVVPAVSGAPGFQTGHWAWSTGDSELTGLAMMVFDSAENAN
Ga0062594_1007215132	3300005093	Soil	MHALIVRATIHNAERTREVLNSQVVPQASGAPAFQAGYWTWPTGEGELNVLAMIIFDSGENAR
Ga0066674_101464251	3300005166	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGGETNGLSMVIFDSEENARAAGDRVSAIAA
Ga0066673_105761712	3300005175	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWSTGGGESNGLSMIIFDSEENARAAG
Ga0066688_109572051	3300005178	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGVETKGLSMIIFESEE
Ga0066684_110068541	3300005179	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGVETNGLSMIIFDSEENAR
Ga0066685_109716371	3300005180	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGVETNGLSMIIFESEENARAAGDRIS
Ga0066678_101256481	3300005181	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKAGYWTWATGGGETNGLSMIIFDSEENARAAGDR
Ga0066671_108693921	3300005184	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGVETNGLSMIIFDSEENARA
Ga0068868_1000695481	3300005338	Miscanthus Rhizosphere	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWMTGGGETNGLSMVIFDSEENARAAGDRV
Ga0070668_1006782261	3300005347	Switchgrass Rhizosphere	MHAVVVRVTIHNADRTRQVLTGQVVPQVSGATGFKSGYWTWSTGSGDLNGLSMIIFDTEENARAAGDRIRAIAA
Ga0070668_1013802871	3300005347	Switchgrass Rhizosphere	MHALVVRVTIHDADRAREALNGRVVPGVSSSPGFKTGHWTWSEDKSNGLTMIIFDSEENA
Ga0070671_1013536942	3300005355	Switchgrass Rhizosphere	MHALVVRVTLHDADRAREALNSRVVPGVSSSPGFKSGHWTWSEDQSNGLTMIIFDSQENARAAGERIKS
Ga0070674_1016279762	3300005356	Miscanthus Rhizosphere	MHALVVRVTLHDADRAREALNSRVVPGVSSSPGFKSGHWTWSEDQSNGLTMIIFDSEENARAAGDRI
Ga0070710_105416642	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWMTGGAETNGLSMIIFDSEENARAA
Ga0070707_1013892962	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MHALVVRVTIHNADRTRELLNSQVVPQVSGAPGFKTGYWTWPTGGGELNGLSMIIFDSEENARAAGDR
Ga0070665_1012020751	3300005548	Switchgrass Rhizosphere	MHALLVRVTIHNADRTREVLNSQVVPQVSGAPGFKAGYWTWATGGGETNGLSMIVFD
Ga0066670_100650904	3300005560	Soil	MHALVVRVTINNADRTREVLKSQVVPQVSGAPGFEKGYWTWSTGGGGLNGLSMTIFDSEEHARAAGDRISAIAA
Ga0066699_112339401	3300005561	Soil	MHALVVRVTINNADRTREVLNSQVVPQVSGAPGFKTGYWTWSAGGGELNGLSMIMFDSEENARA
Ga0066903_1031931543	3300005764	Tropical Forest Soil	MHAVVVRVNIHNADRTREVLNSQVVPQVSGAPGFEAGYWTWSTGGGELDGLSMLVFDSEENARAAGERIRAIAT
Ga0066903_1066274772	3300005764	Tropical Forest Soil	MHALVVCGTIHNADRAREVLSSRVVPLASSAPGFKAGYWTWPIGEGELNVLAMLIFDSEENARAASDRVSANFSEL
Ga0066696_101529624	3300006032	Soil	MHALVVRVTINNADRTREVLKSQVVPQVSGAPGFEKGYWTWSTGGGGLNGLSMIIFDSEEHARAAGDR
Ga0066652_1005447732	3300006046	Soil	MHALVVRVTIHDADATRKVLNGQVVPQLSAAPGFKSGYWTWSTGGGGLNGLSMVIYDSEDNARSAGDR
Ga0105245_121637452	3300009098	Miscanthus Rhizosphere	MHALVVRVTIHNADRTRELLNSQVVPQVSGAPGFKTGYWTWPTGGGELNGLSMIIFDSEENARAAGDRVSAVAAGA
Ga0105242_126380151	3300009176	Miscanthus Rhizosphere	MHALVVRVTIHNADRTREVLNGQVVPGISGAPGFKTGYWTWSSGGELNGLSMIIFDSEENARAAGDRISAIAAN
Ga0126314_100797701	3300010042	Serpentine Soil	VTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGAELNGLSMVIFDSEENARAAGDRVSAITA
Ga0126382_120853241	3300010047	Tropical Forest Soil	MHALVVRVTIHNADRTREVLNGQVVPQVSGAPGFKSGYWTWSTGGGELNGLSMII
Ga0126370_107523711	3300010358	Tropical Forest Soil	MHALVVRVSIHNADRTREVLNSQVVQLASAAPGFKAGYWTWPTGEGELNALSMIIFDSEENARAAGDRGEREFFAA*
Ga0126370_119829603	3300010358	Tropical Forest Soil	MHAVVVRGTIHNADRTREVLKTRVVPLASGAPGFKAGYWTWPTEGELNVLAMIIFDSEE
Ga0126372_108534992	3300010360	Tropical Forest Soil	VYALVVRVTIHNVDRTRDVLNSQVVPQVSAAPGFKSGNWTWATEGGKTNGLSMIIFES
Ga0126372_129190661	3300010360	Tropical Forest Soil	MHALVVRGTIHNADRAREVLSSRVVPLASSAPGFKAGYWTWPIGEGELNVLAMLIFDSEENARAASDR
Ga0134124_106360403	3300010397	Terrestrial Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWMTGGGETNGLSMVIFDS
Ga0138514_1000099132	3300011003	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWMTGGGETNGLSMVIFDSEENARAAGDRVS
Ga0120174_10610921	3300012008	Permafrost	MHAVVVRVTIHNADRTRDVLNDQVVPQVSGASGFKAGYWTWSTSGGGTNGLSMIVFGLGGERPGGGRPD
Ga0120152_11138731	3300012011	Permafrost	MHALVVRVTIHNADRTREVLNGQVVPQVSGAPGFKTGYWTWSTGGGELNGLSMIIFDSEENARAA
Ga0137388_110735091	3300012189	Vadose Zone Soil	MHALIVRVTIHNADRTRELLNSRVVPQVSGAPGFKTGYWTWSTGGGELNGLSMLIFDSEENARA
Ga0137388_112563462	3300012189	Vadose Zone Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWSTGGGELNGLSMIVFDSEE
Ga0137380_105521932	3300012206	Vadose Zone Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKAGYWTWPTGGGELNGLSMIVIDSEENAREAG
Ga0137377_102175513	3300012211	Vadose Zone Soil	MYAVVIRVTIHNVDRTREVLNSQVVPQVSGAPGFKTGYWTWSTGGGESNGLSMIIFDSEENA
Ga0137387_105313241	3300012349	Vadose Zone Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKAGYWTWPTGGGELNGLSMIIFDSEENAR
Ga0137386_102283862	3300012351	Vadose Zone Soil	MYAVVVRVTIHNADRTREVLNGQVVPQVSGAPGFKAGYWTWSTGGGGTNGLSMIVFDSE
Ga0137367_106029221	3300012353	Vadose Zone Soil	MHALVVRVTVHNADRTREVLNSEVVPQVSGAPGFKTGYWTWPTGGGELNGLSMIIFDSEENA
Ga0137366_107405542	3300012354	Vadose Zone Soil	MHAVVVRVTIHNADRTREVLNSQVVPQVSGAPGFKSGYWTWSTDGGQLNGLSVVIFDSEENARAA
Ga0157290_104384522	3300012909	Soil	MHALVVRVTLHDADRAREALNSRVVPGVSSSPGFKSGHWTWSEDQSNGLTMIIFDSEENA
Ga0157302_103223691	3300012915	Soil	MHALVVRAAIHNADRTREVLNSQVVPQASGAPGFKAGYWTWPTGEGELNVLAMIIFDSEENARAAGDRGEREFFAA*
Ga0157310_102839951	3300012916	Soil	MHALVVRVTLHDADRAREALNSRVVPGISSSPRFESGHWTWSEDQSNGLTMIIFDSQENARAAGERIKSIAADMRDDVTLDG
Ga0162652_1000163561	3300012941	Soil	MHALVVRVTIHNADRTREMLNSRVVPQVSGAPGFKTGYWTWPTGGEAPNGLSMIIFDSEENARAAGDRVSAVA
Ga0126375_118808712	3300012948	Tropical Forest Soil	MHALVVRVTIHNADRTREVLNGQVVPQVSGAPGFKSGYWTWSTGGGELNGLSMIIFDSAENARAAGDRISAIATN
Ga0164303_103558852	3300012957	Soil	MHALVVRVTIHNADRTRELLNSQVVPQVSGAPGFKTGYWTWPTGGGELNGLSMIIFDSEENARAAGDRVSAV
Ga0164299_110560091	3300012958	Soil	MHALVVRVTIHNADRTREVLNSQVVPGVSGAPGFEAGYWTWSTGGGGLNGLSMIMFDSEENARAAG
Ga0126369_126408111	3300012971	Tropical Forest Soil	MHAVVVRGTIHDADRTREVLHSQVVRLASGAPGFKAGYWTWPTGEGELNVLAMIIFDTEENARAA
Ga0164304_118134712	3300012986	Soil	MHALVVRVTIHNDDRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGGETNGLSMIIFDSEENARAAG
Ga0157369_104389881	3300013105	Corn Rhizosphere	MKQARHPKGDEMHALIVRVTIHNADRTREVLNNQVVPQISGASGFKAGYWTWSTGGGELNGLSMIVFDSEENARAA
Ga0120154_10536021	3300013501	Permafrost	MHALVVRVTIHDVDRTREVLNSQVVPQASGAPGFKAGYWTWSTGGGESNGLSMIIFDSEE
Ga0120147_10834032	3300013758	Permafrost	MHAVVVRVTIHNADRTRDVLNDQVVPQVSGASGFKAGYWTWSTSGGGTNGLSMIVFD
Ga0120179_10303471	3300013763	Permafrost	MHAVVVRVTIHNADRTRDVLNDQVVPQVSGASGFKAGYWTWSTSGGGTNGLSMIV
Ga0120155_10335091	3300013768	Permafrost	MHAVVVRVTIHNADRTRDVLNDQVVPQVSGASGFKAGYWTWSTSGGGANGVSMIVFDSEE
Ga0157380_104379441	3300014326	Switchgrass Rhizosphere	MHALVVRVTLHDADRAREALNSRVVPGVSSSPGFKSGHWTWSEDQSNGLTMIIFDSEENARAAGDRIES
Ga0157380_107307743	3300014326	Switchgrass Rhizosphere	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWMTGGGETNGLSMVIFDSEENARA
Ga0132258_134585341	3300015371	Arabidopsis Rhizosphere	MHALVVRVTIHNADRTRELLKSQVVPQVSGAPGFKTGYWTWPTGGGELNGLSMIIFDSEE
Ga0132256_1018813122	3300015372	Arabidopsis Rhizosphere	MHALVVRVTIHNADRTQQVLNSQVVPQVSGAPGFKTGYWTWSSGGELNGLSMIIFDSEENARAA
Ga0132257_1014510271	3300015373	Arabidopsis Rhizosphere	MYAVVVRVTIHNADRTREVLTGQVVPQISGAPGFKSGQWTWSTGGGELNGLSMIIFD*
Ga0182036_117994211	3300016270	Soil	MHALVVRVTIHNADRTREVLNSQVVPQASGSPGFKTGYWTWATGGGELNGLSMIIYD
Ga0182032_118362961	3300016357	Soil	MHALVVRVTIHNVDRTREVLNSQVVPKLSGAPGFKTGYWTWSTGGGAQNGLSMIIFDSEENARAAGDRISAIAAE
Ga0187776_104203822	3300017966	Tropical Peatland	MHALVVRGTIHDADRTREVLHSQVVRLASGAPGFKAGYWTWPTGGGELNVLAMIIFDSEENARAAG
Ga0184621_102826921	3300018054	Groundwater Sediment	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWSTGGGELNGLSIIIF
Ga0184619_100894651	3300018061	Groundwater Sediment	MHALVVRVTIHNANRTREVLNSQVVPQVSGAPGFKTGYWTWMTGGGETNGLSMIIFDSEENARAAGDRVSAIAA
Ga0184619_105282132	3300018061	Groundwater Sediment	MHALVVRVTIHNADRTREMLNSQVVPQVSGAPGFKTGYWTWPTGGAAPNGLSMIIFDSEENARAAGDRVSAV
Ga0066662_104794581	3300018468	Grasslands Soil	MHALVTRVTIHNADHTREVLTSQVVPQVSGAPGFKTGYWTWQTGGGELNGLAMIIFDSEE
Ga0066662_116913422	3300018468	Grasslands Soil	MHACVVRVTIHNADRTREVLNSQVVPQVSGAPGFKAGYWTWSTGDGGLNGLSMAIFDSEENARAV
Ga0190264_116278641	3300019377	Soil	MHALVVRVTIHNADRTRELLNSQVVPQVSGAPGFKTGYWTWPSGGGELNGLSMIIFDSEENARAAGDRVS
Ga0193730_10866992	3300020002	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWSTGGGELNGLSVIVFDSEENAR
Ga0197907_112139772	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWMTGGGETNGLSMVIFDSEE
Ga0222623_102501702	3300022694	Groundwater Sediment	MHALVVRVTIHNADRTRELLNSQVVPQVSGAPGFKTGYWTWPTGGGELNGLSMIIFDSEENARA
Ga0222622_106278671	3300022756	Groundwater Sediment	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWMTGGGETNGLSMIIFDSE
Ga0247802_10915171	3300023077	Soil	MHAVVVRASIHNADRTREVLSSRVVPQASGAPGFEAGYWTWSTGDGELNVLAMILFDSEENAR
Ga0207660_114425651	3300025917	Corn Rhizosphere	MHAVVVRVTIHNADRTRQVLTGQVVPQVSGATGFKSGYWTWSTGSGDLNGLSMIIFDTEENARAAGDRIRAI
Ga0207662_111485981	3300025918	Switchgrass Rhizosphere	MHALVVRVTIHNADRTREVLNGQVVPGISGAPGFKTGYWTWSSGGELNGLSMIIFDSEEN
Ga0207668_120751301	3300025972	Switchgrass Rhizosphere	MHALVVRVTIHNADRTREVLNGQVVPGISGAPGFKTGYWTWSSGGELNGLSMIIFDSEENARAAGDRISA
Ga0209687_13068153	3300026322	Soil	MHALVVRVTINNADRTREVLKSQVVPQVSGAPGFEKGYWTWSTGGGGLNGLSMTIFDSEEHARAAGDR
Ga0209470_12142051	3300026324	Soil	MHALVVRVTIHNADRTRDVLNSQVVPQVSGAPGFKTGYWTWTTGGVEANGLSMIIFD
Ga0209801_10945933	3300026326	Soil	MHALVVRVTIHDADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGVETNGLSMMIFE
Ga0209474_102778431	3300026550	Soil	MHALVVRVTINNADRTREVLKSQVVPQVSGAPGFEKGYWTWSTGGGGLNGLSMIIFDSEEHARAAGDRIS
Ga0209622_10929311	3300027502	Forest Soil	MHALVVRVTIHNADRTRDVLNSQVVPQVSSAPGFKTGYWTWATGGGETNGLSMIIFDSEE
Ga0307321_11018441	3300028704	Soil	MHALVVRVTIHNADRTRELLNSQVVPQVSGAPGFKTGYWTWPTGGGELNGLSMIIFDSEENARAAGDRV
Ga0307301_100704551	3300028719	Soil	MHALVVRVTIHNADRTRDVLNSQVVPQVSGAPGFKTGYWTWPTGGEASNGLSMIIFDSEENARAA
Ga0307317_101466952	3300028720	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWMTGGGETNGLSMIIFDSEENARAAGDRVSAIA
Ga0307320_103830501	3300028771	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGGETNGLSMIIFDAEE
Ga0307323_100300341	3300028787	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAAGFKAGYWTWSTGGAELNGLSMIVFDSEENARAAGDRIS
Ga0307287_103165542	3300028796	Soil	MHALVVRVTIHNADRTRDVLNSQVVPQVSGAPGFKTGYWTWATGGGETDGLSMIIFDSEENARAAG
Ga0307305_100178564	3300028807	Soil	MHALVVRVTIHNADRTRDVLNSQVVPQVSGAPGFKTGYWTWATGGGETDGLSMIIFDSEENARDGRSDKRDRG
Ga0307296_102570952	3300028819	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGAETNGLSMIIFDS
Ga0307289_101412311	3300028875	Soil	MHALVVRVTIHNADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGGETNGLSMIIFDSEENARAAGDRIS
Ga0307300_101220072	3300028880	Soil	MHALVVRVTIHNADRTRDVLNSQVVPQVSGAPGFKTGYWTWATGGGETDGLSMIIFDSEENARAAGDRISAIAAD
Ga0318534_106553861	3300031544	Soil	MHAIVVRATIHNAERTREVLNSQVVPQASGAPGFEAGYWTWPTGGGELNVLAMIIFDSEENARAAGDRVSANFSQLED
Ga0318502_108509892	3300031747	Soil	MYALVVRVTIHNADRVRGTLNSQVVPQTSSAPGFKTGYWTWPTGGGELNGLSMIIFDSQE
Ga0318509_103273761	3300031768	Soil	MHALVVRVTIHNADRTREVLNSQVVPQASGSPGFKTGYWTWATGGGELNGLSMIIFDSEENARAAGDRVSAIA
Ga0318509_107830332	3300031768	Soil	MHAVVVRVTIHDADRAREVLNSQVVQLASGAPGFKAGYWTWPTVEGQLNALTMIIFDSEENARGAA
Ga0318521_107061843	3300031770	Soil	MHAVVVRVTIHDADRAREVLNSQVVQLASGAPGFKAGYWTWPTVEGQLNALTMIIFDSEENARGAADRVKANFAQLEN
Ga0318550_106454581	3300031797	Soil	MHALVVRVTIHKEDRTREVLNGQVVPQVSSSPGFKTGYWTWANGGELNGLSMIIYDSEENARAA
Ga0306926_125689761	3300031954	Soil	MYALVVRVTIHNADRVRGRLNSEVVPQTSSAPGFKAGYWTWPTGGGELNGLSMIIFDSEENARAAGD
Ga0308176_112077631	3300031996	Soil	MHALVVRVTIHDADRTREVLNSQVVPQVSGAPGFKTGYWTWTTGGELNGLSMVIFDSEENARAAGDRV
Ga0306920_1010885561	3300032261	Soil	MYALVVRVTIHNADRVRGRLNSEVVPQTSSAPGFKAGYWTWPTGGEELNGLSMIIFDSEQNARAAGDRIS
Ga0335080_114143301	3300032828	Soil	MHALVTHVTIHDADRTRELLNSQVVPAVSGAPGFQTGHWAWSTGDSELTGLAMMVFDSAENANGAGERI
Ga0335076_117513311	3300032955	Soil	MHALVTDVTIHDADNTREMLNNQVVPGVSGAPGFQTGYWTWLDGEGDLNGLAMMIFDSAEHATGAGERV
Ga0335077_121577131	3300033158	Soil	MHALVTRVTVHNADRTREVLTSQVVPQVSGAPGFETGYWTWQTSGGELNGLAMIIFDSEENARAAGDRISA
Ga0314864_0011601_3_206	3300033805	Peatland	MYALVTRVIIHDADRTREVLNSQVVPQVSGAPGFKTGYWTWQTDGGELNGLAMMIFDSEENARAVGDR