Metagenome / Metatranscriptome Family F081701

Basic Information
Family ID	F081701
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	71 residues
Representative Sequence	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLIDIAVGKHTSKHE
Number of Associated Samples	96
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	65.18 %
% of genes near scaffold ends (potentially truncated)	42.11 %
% of genes from short scaffolds (< 2000 bps)	79.82 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (64.912 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (14.035 % of family members)
Environment Ontology (ENVO)	Unclassified (26.316 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 62.50% β-sheet: 0.00% Coil/Unstructured: 37.50%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF01546	Peptidase_M20	46.49
PF02559	CarD_CdnL_TRCF	4.39
PF01195	Pept_tRNA_hydro	2.63
PF13624	SurA_N_3	1.75
PF12804	NTP_transf_3	0.88
PF00106	adh_short	0.88
PF00582	Usp	0.88
PF14572	Pribosyl_synth	0.88
PF00132	Hexapep	0.88
PF14693	Ribosomal_TL5_C	0.88
PF03461	TRCF	0.88
PF01694	Rhomboid	0.88
PF01957	NfeD	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0193	Peptidyl-tRNA hydrolase	Translation, ribosomal structure and biogenesis [J]	2.63
COG1197	Transcription-repair coupling factor (superfamily II helicase)	Transcription [K]	1.75
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
All Organisms	root	All Organisms	35.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
cellular organisms	root	All Organisms → cellular organisms	35.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	26.32 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.44 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	13.16 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.75 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.88 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.88 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	9.65 %
Miltoncostaeales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales	3.51 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.75 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	9.65 %
Miltoncostaeaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae	3.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.75 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	9.65 %
Miltoncostaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	3.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.75 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001205\|C688J13580_1021820	Not Available	777	Open in IMG/M
3300001686\|C688J18823_10147923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	1612	Open in IMG/M
3300001686\|C688J18823_10223091	Not Available	1262	Open in IMG/M
3300001686\|C688J18823_10266435	Not Available	1134	Open in IMG/M
3300002568\|C688J35102_118338828	Not Available	550	Open in IMG/M
3300002568\|C688J35102_119942343	Not Available	821	Open in IMG/M
3300002568\|C688J35102_120472807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1097	Open in IMG/M
3300002568\|C688J35102_120545573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1165	Open in IMG/M
3300002568\|C688J35102_120828049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1718	Open in IMG/M
3300004081\|Ga0063454_100657860	Not Available	779	Open in IMG/M
3300004157\|Ga0062590_100046946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2360	Open in IMG/M
3300004479\|Ga0062595_100466874	Not Available	934	Open in IMG/M
3300004479\|Ga0062595_102372459	Not Available	525	Open in IMG/M
3300005163\|Ga0066823_10037528	Not Available	830	Open in IMG/M
3300005167\|Ga0066672_10010238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4484	Open in IMG/M
3300005176\|Ga0066679_10903479	Not Available	556	Open in IMG/M
3300005179\|Ga0066684_11033102	Not Available	529	Open in IMG/M
3300005186\|Ga0066676_10686500	Not Available	697	Open in IMG/M
3300005187\|Ga0066675_10558807	Not Available	859	Open in IMG/M
3300005330\|Ga0070690_100528207	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300005332\|Ga0066388_106137741	Not Available	607	Open in IMG/M
3300005338\|Ga0068868_100036880	All Organisms → cellular organisms → Bacteria	3787	Open in IMG/M
3300005340\|Ga0070689_100299538	Not Available	1338	Open in IMG/M
3300005345\|Ga0070692_10405294	Not Available	862	Open in IMG/M
3300005347\|Ga0070668_101391342	Not Available	639	Open in IMG/M
3300005366\|Ga0070659_100053205	All Organisms → cellular organisms → Bacteria	3186	Open in IMG/M
3300005434\|Ga0070709_10319995	Not Available	1138	Open in IMG/M
3300005434\|Ga0070709_11234018	Not Available	601	Open in IMG/M
3300005435\|Ga0070714_100102994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2518	Open in IMG/M
3300005437\|Ga0070710_10475042	Not Available	851	Open in IMG/M
3300005437\|Ga0070710_11146433	Not Available	572	Open in IMG/M
3300005439\|Ga0070711_100265882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1351	Open in IMG/M
3300005445\|Ga0070708_100383512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1325	Open in IMG/M
3300005455\|Ga0070663_101837588	Not Available	543	Open in IMG/M
3300005457\|Ga0070662_101328591	Not Available	619	Open in IMG/M
3300005466\|Ga0070685_10063558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2168	Open in IMG/M
3300005468\|Ga0070707_101031409	Not Available	788	Open in IMG/M
3300005558\|Ga0066698_10768959	Not Available	627	Open in IMG/M
3300005587\|Ga0066654_10601206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609	Open in IMG/M
3300005615\|Ga0070702_101500065	Not Available	554	Open in IMG/M
3300005718\|Ga0068866_10955158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	606	Open in IMG/M
3300006173\|Ga0070716_100041505	Not Available	2564	Open in IMG/M
3300006173\|Ga0070716_100394266	Not Available	994	Open in IMG/M
3300006175\|Ga0070712_100412498	Not Available	1118	Open in IMG/M
3300006603\|Ga0074064_10005074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3920	Open in IMG/M
3300006755\|Ga0079222_10048514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	1956	Open in IMG/M
3300006881\|Ga0068865_100152078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1757	Open in IMG/M
3300009012\|Ga0066710_102514500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	744	Open in IMG/M
3300009137\|Ga0066709_100099138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3561	Open in IMG/M
3300009137\|Ga0066709_104305970	Not Available	519	Open in IMG/M
3300009148\|Ga0105243_10513470	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300009174\|Ga0105241_12692883	Not Available	501	Open in IMG/M
3300009177\|Ga0105248_11398567	Not Available	792	Open in IMG/M
3300010375\|Ga0105239_10361595	Not Available	1639	Open in IMG/M
3300012212\|Ga0150985_100951472	Not Available	1001	Open in IMG/M
3300012212\|Ga0150985_115951014	Not Available	685	Open in IMG/M
3300012960\|Ga0164301_10607731	Not Available	808	Open in IMG/M
3300012987\|Ga0164307_10070493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2086	Open in IMG/M
3300012987\|Ga0164307_10724080	Not Available	782	Open in IMG/M
3300013297\|Ga0157378_10302054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	1549	Open in IMG/M
3300013306\|Ga0163162_12520176	Not Available	591	Open in IMG/M
3300013307\|Ga0157372_10362163	Not Available	1690	Open in IMG/M
3300013308\|Ga0157375_11296085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	856	Open in IMG/M
3300013503\|Ga0120127_10181070	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300013765\|Ga0120172_1095970	Not Available	722	Open in IMG/M
3300013772\|Ga0120158_10098713	Not Available	1763	Open in IMG/M
3300014497\|Ga0182008_10558406	Not Available	637	Open in IMG/M
3300015371\|Ga0132258_10130307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5996	Open in IMG/M
3300015372\|Ga0132256_102755149	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300017993\|Ga0187823_10111829	Not Available	828	Open in IMG/M
3300018431\|Ga0066655_10558694	Not Available	766	Open in IMG/M
3300018433\|Ga0066667_12195809	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300018468\|Ga0066662_10000454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17964	Open in IMG/M
3300018468\|Ga0066662_10891827	Not Available	872	Open in IMG/M
3300021445\|Ga0182009_10206711	Not Available	958	Open in IMG/M
3300025321\|Ga0207656_10279482	Not Available	823	Open in IMG/M
3300025898\|Ga0207692_10047348	Not Available	2158	Open in IMG/M
3300025898\|Ga0207692_10753238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	635	Open in IMG/M
3300025901\|Ga0207688_10005899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6669	Open in IMG/M
3300025908\|Ga0207643_10137162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1459	Open in IMG/M
3300025913\|Ga0207695_10112177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2705	Open in IMG/M
3300025914\|Ga0207671_11014088	Not Available	654	Open in IMG/M
3300025915\|Ga0207693_10501394	Not Available	947	Open in IMG/M
3300025917\|Ga0207660_10308845	Not Available	1260	Open in IMG/M
3300025921\|Ga0207652_10654297	Not Available	939	Open in IMG/M
3300025925\|Ga0207650_10118644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2057	Open in IMG/M
3300025926\|Ga0207659_11593809	Not Available	557	Open in IMG/M
3300025929\|Ga0207664_10077671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2691	Open in IMG/M
3300025929\|Ga0207664_10351403	Not Available	1305	Open in IMG/M
3300025934\|Ga0207686_10612352	Not Available	858	Open in IMG/M
3300025936\|Ga0207670_10454564	Not Available	1033	Open in IMG/M
3300025938\|Ga0207704_10004893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6154	Open in IMG/M
3300025945\|Ga0207679_10537804	Not Available	1047	Open in IMG/M
3300025960\|Ga0207651_10497901	Not Available	1053	Open in IMG/M
3300027725\|Ga0209178_1083772	Not Available	1050	Open in IMG/M
3300027787\|Ga0209074_10016078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	1950	Open in IMG/M
3300028755\|Ga0307316_10064875	Not Available	1242	Open in IMG/M
3300028768\|Ga0307280_10157916	Not Available	786	Open in IMG/M
3300031170\|Ga0307498_10035704	Not Available	1258	Open in IMG/M
3300031226\|Ga0307497_10779411	Not Available	500	Open in IMG/M
3300031366\|Ga0307506_10058977	Not Available	1145	Open in IMG/M
3300031446\|Ga0170820_10809571	Not Available	869	Open in IMG/M
3300031720\|Ga0307469_12208318	Not Available	536	Open in IMG/M
3300031938\|Ga0308175_100614865	Not Available	1171	Open in IMG/M
3300031938\|Ga0308175_101743823	Not Available	697	Open in IMG/M
3300031996\|Ga0308176_10101602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2525	Open in IMG/M
3300031996\|Ga0308176_11064702	Not Available	855	Open in IMG/M
3300032074\|Ga0308173_10178831	Not Available	1743	Open in IMG/M
3300032174\|Ga0307470_10911769	Not Available	691	Open in IMG/M
3300033233\|Ga0334722_10094329	All Organisms → cellular organisms → Bacteria	2278	Open in IMG/M
3300033551\|Ga0247830_11458706	Not Available	547	Open in IMG/M
3300034268\|Ga0372943_0000812	All Organisms → cellular organisms → Bacteria	14283	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.81%
Host-Associated	Host-Associated	27.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.05%
Plants	Host-Associated → Plants	27.19%
Aquatic	Environmental → Aquatic	1.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.05%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.54%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.65%
Freshwater	Environmental → Aquatic → Freshwater	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.47%
Loam	Environmental → Terrestrial → Soil → Loam	31.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.63%
Lake	Environmental → Aquatic → Freshwater → Lake	0.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.88%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	21.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	8.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.02%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.51%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.88%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.04%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	8.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.39%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.51%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.51%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.63%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.88%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001205	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J13580_10218202	3300001205	Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLVLAILTLVDIAVGKHTSKHE*
C688J18823_101479232	3300001686	Soil	RRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLVLAILTLVDIAVGKHTSKHE*
C688J18823_102230912	3300001686	Soil	LRRRSLAPLIALVLPLLLPAVTWAATPAAPEKPSGHDWTLDTIFVVALGIPLVLTILTLVDIAVGKHTSKHE*
C688J18823_102664351	3300001686	Soil	RRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLVLTILTLVDIAVGKHTSKHE*
C688J35102_1183388282	3300002568	Soil	VRRRFAAPLIALYLTLAVPAMAWAATSTGPEKPEGHDYTLTTIFVVALGIPLVLTILTLIDIAAGKHTQKHE*
C688J35102_1199423432	3300002568	Soil	VLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE
C688J35102_1204728072	3300002568	Soil	PLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLVLAILTLVDIAVGKHTSKHE*
C688J35102_1205455732	3300002568	Soil	LRRRYLAPLIALVLPLLLPAVTWAATPAAPEKPSGHDWTLDTIFVVALGIPLVLTILTLVDIAVGKHTSKHE*
C688J35102_1208280492	3300002568	Soil	VRRRLAAPLIALYLTLALPAMAWAATSTGPEKPEGHDYTLTTIFVVALGIPLVLTILTLIDIAVGKHTQKHH*
Ga0063454_1006578602	3300004081	Soil	VRRRLAAPLIALYLTLALPAMAWAATSTGPEKPEGHDYTLTTIFVVALGIPLVLTILTLIDIAAGKHTQKHE*
Ga0062590_1000469462	3300004157	Soil	LRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLIDIAVGKHTSKHE*
Ga0062595_1004668742	3300004479	Soil	VRRRLAAPLIALYLTLILPAVVFAATTAPEKPEGHDWTLDSIFVVALGIPLILVVLTLIDIAVGK
Ga0062595_1023724592	3300004479	Soil	MGVLLPLALPAASWAATTTPPLEKPTGHDWTLDTIFVVALGIPLVLTILTLIDIAVGKHTSRREH*
Ga0066823_100375282	3300005163	Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHT
Ga0066672_100102384	3300005167	Soil	VRRRLAAPLIALYLTLALPALTWAATSTSGAPEKPEGHDYTLTTIFVIALGIPLVLTILTLIDIAVGKHTQKHQ*
Ga0066679_109034792	3300005176	Soil	VRRRLAAPLIALYLTLILPAAVFAAATTPEKPEGHDWTLDTIFVVALGIPVILAVLTLIDIAVGKHTGKHH*
Ga0066684_110331022	3300005179	Soil	VRRRLAAPLIALYLTLILPAAVFAATTTPEKPEGHDWTLDSIFVVALGIPVILVVLTLIDIAVG
Ga0066676_106865002	3300005186	Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLVLTILTLVDIAVGKHTSKHE*
Ga0066675_105588072	3300005187	Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0070690_1005282072	3300005330	Switchgrass Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0066388_1061377411	3300005332	Tropical Forest Soil	VRRRLSAPLIAIYLLLVLPALAFAAETAPEKPEGHDYTLTTIFVVALGIPLILVILTLIDIAVGKHTGKHH*
Ga0068868_1000368802	3300005338	Miscanthus Rhizosphere	VRRRLSAPLIAAYLLLVLPALAGAATTAPEKPEGHDYTLTTIFVVALGIPLILVILTLIDIAVGKHTGQHHE*
Ga0070689_1002995382	3300005340	Switchgrass Rhizosphere	LPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0070692_104052942	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLIDIAVGKHTSKHE*
Ga0070668_1013913421	3300005347	Switchgrass Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTL
Ga0070659_1000532055	3300005366	Corn Rhizosphere	LAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLIDIAVGKHTSKHE*
Ga0070709_103199952	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VRRRLAAPLIALYFTLALPAATWAATSTTNAPEKPEGHDYTLTTIFIIALGIPLVLTVLTLIDIAVGKHTQKHHE*
Ga0070709_112340182	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LRRRYLAPLIALVLPLLLPAASWAATTTSGTEKPAGHDWTLDSIFVVALGIPLVLTILTLVDIAVGKHTSKHE*
Ga0070714_1001029942	3300005435	Agricultural Soil	VRRRLAAPLIALYLTLALPAMAWAATSTGPEKPEGHDYTLTTIFVVALGIPLVLSILTLIDIAVGKHTQKHE*
Ga0070710_104750422	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTPANEKPAGHDWTLDGIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0070710_111464331	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLVLTILTLVDIAVGKHTSKHE*
Ga0070711_1002658822	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VRRRYLAPLIALVLPLLLPAVSWAATTTSGTEKPAGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0070708_1003835122	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAADTSGTEKPAGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0070663_1018375881	3300005455	Corn Rhizosphere	VDQAGRCDPRPLGMVVCGRSRPEVPTVRRRLSAPLIAAYLLLVLPALAGAATTAPEKPEGHDYTLTTIFVVALGIPLILVILTLIDIAVGKHTGQHHE*
Ga0070662_1013285912	3300005457	Corn Rhizosphere	IALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLIDIAVGKHTSKHE*
Ga0070685_100635582	3300005466	Switchgrass Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLIDIAVGKHTSKHE*
Ga0070707_1010314091	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	STSGGSPLRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0066698_107689592	3300005558	Soil	APLIALYLTLILPAAVFAATTTPEKPEGHDWTLDSIFVVALGIPVILVVLTLIDIAVGKHTGKPH*
Ga0066654_106012061	3300005587	Soil	VPSVRRRLAAPLIALYLTLALPAATWAATSTTNAPEKPEGHDSTLTTIFIIALGIPLVLTVLTLIDIAVGKHTQKHHE*
Ga0070702_1015000651	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MVVCGRSRPEVPTVRRRLSAPLIAAYLLLVLPALAGAATTAPEKPEGHDYTLTTIFVVALGIPLILVILTLIDIAVGKHTGQHHE*
Ga0068866_109551581	3300005718	Miscanthus Rhizosphere	PRPSLMVVWRASSSGGSPLRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0070717_104801561	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	SSGSVRSTAVLDGSLAVVMRRRLIAPLVAFLLPLLLPALSWAAATDTTTEKPSGHDYTLTTIFFIALGIPLILTILTLIDIAVGKHTSKRDH*
Ga0070716_1000415052	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MGRRLSALVMGVLLPLALPAASWAATTTPPLEKPTGHDWTLDTIFVVALGIPLVLTILTLIDIAVGKHTSRREH*
Ga0070716_1003942662	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LRRRYLAPLIALVLPLLLPAATWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTFLTLIDIAVGKHTSKHE*
Ga0070712_1004124982	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VRRRLAAPLIALYLTLALPALTWAATSTGSAPEKPEGHDYTLTTIFVVALGIPLVLTILTLIDIAVGKHTQKHQ*
Ga0074064_100050741	3300006603	Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIA
Ga0079222_100485144	3300006755	Agricultural Soil	APLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0068865_1001520782	3300006881	Miscanthus Rhizosphere	LRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0066710_1025145002	3300009012	Grasslands Soil	VRRRLAAPLIALYLTLILPAAVFAATTTPEKPEGHDWTLDSIFVVALGIPVILVVLTLIDIAVGKHTGKPH
Ga0066709_1000991382	3300009137	Grasslands Soil	VRRRLAAPLIALYLTLILPAAVFAATTTPEKPEGHDWTLDSIFVVALGIPVILVVLTLIDIAVGKHTGKPH*
Ga0066709_1043059702	3300009137	Grasslands Soil	AGVTFRRSPVVRRRLAAPLIALYLTLILPAAVFAATTTPEKPEGHDWTLDSIFVVALGIPVILVVLTLIDIAVGKHTGKPH*
Ga0105243_105134702	3300009148	Miscanthus Rhizosphere	LRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0105241_126928832	3300009174	Corn Rhizosphere	PEVPSVRRRFAAPLIALYLTLAVPAMAWAATSTGPEKPEGHDWTLTTIFVVALGIPLVLTILTLIDIAVGKHTQKHE*
Ga0105248_113985671	3300009177	Switchgrass Rhizosphere	LRRRYLAPLIALVLPLLLPAVIFFAATAATEKPDGHDWTLDTIFVVALGIPLILTILTLVDIA
Ga0126310_117295261	3300010044	Serpentine Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALSIPLILTILT
Ga0105239_103615951	3300010375	Corn Rhizosphere	SSSGGSPLRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLIDIAVGKHTSKHE*
Ga0150985_1009514722	3300012212	Avena Fatua Rhizosphere	PPLRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLVLAILTLVDIAVGKHTSKHE*
Ga0150985_1159510141	3300012212	Avena Fatua Rhizosphere	GSPLRRRYLAPLIALVLPLLLPAVTWAATPAAPEKPSGHDWTLDTIFVVALGIPLVLTILTLVDIAVGKHTSKHE*
Ga0164301_106077312	3300012960	Soil	MVVCGRSRPEVPTVRRRLSAPLIAAYLLLVLPALASAATTAPEKPEGHDYTLTTIFVVALGIPLILVILTLIDIAAGKHTGQHHE*
Ga0164307_100704932	3300012987	Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGK
Ga0164307_107240801	3300012987	Soil	VRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIA
Ga0157378_103020542	3300013297	Miscanthus Rhizosphere	RYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSILVVALGIQLILTILTLVDIAVGKHTSKHE*
Ga0163162_125201762	3300013306	Switchgrass Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALCIPLILTILTLVDIAVGKHTSKHE*
Ga0157372_103621632	3300013307	Corn Rhizosphere	LRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGLPLILTILTLVDIAVGKHTSKHE*
Ga0157375_112960851	3300013308	Miscanthus Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLIDIAVGK
Ga0120127_101810701	3300013503	Permafrost	IALVLPLLLPAVTWAADTTSGTEKPAGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0120172_10959701	3300013765	Permafrost	AAPLIALSLTLILPPAFATAAAPEKPEGHDWTLDTIFVIALGIPLILALLTLIDIAVGKHTAKHD*
Ga0120158_100987132	3300013772	Permafrost	VRRRFAAPLIALFLTLILPAAFAIAAPAPEKPEGHDWTLDTIFVIALGIPLILALLTLIDIAVGKHTAKHD*
Ga0182008_105584062	3300014497	Rhizosphere	VRRRLAAPLIALYLTLALPALTWAATSTASAPEKPEGHDYTLTTIFVVALGIPLVLTILTLIDIAVGKHTQKHQ*
Ga0132258_101303072	3300015371	Arabidopsis Rhizosphere	LRRRYLAPLIALVLPLLLPAATWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE*
Ga0132256_1027551492	3300015372	Arabidopsis Rhizosphere	LRRRYLAPLIALVLPLLLPAATWAATTSGTEKPAGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTS
Ga0187823_101118291	3300017993	Freshwater Sediment	VRRRLAAPLIALYFTLALPAATWAATSTTNAPEKPEGHDYTLTTIFIIALGIPLVLTVLTLIDIAVGKHTQKHHE
Ga0066655_105586941	3300018431	Grasslands Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSK
Ga0066667_121958092	3300018433	Grasslands Soil	VRRRLAAPLIALYFTLALPAVTWAATSTTNAPEKPEGHDYTLTTIFIIALGIPLVLTVLTLIDIAVGKHTQK
Ga0066662_100004547	3300018468	Grasslands Soil	VRRRLAAPLIALYLTLALPALTWAATSTSGAPEKPEGHDYTLTTIFVIALGIPLVLTILTLIDIAVGKHTQKHQ
Ga0066662_108918272	3300018468	Grasslands Soil	VRRRLAAPLIALYFTLVLPAATWAATSTTNAPEKPEGHDYTLTTIFIIALGIPLVLTVLTLIDIAVGKHTQKHHE
Ga0182009_102067112	3300021445	Soil	VRRRLAAPLIALYYTLALPAVTWAATSSTNAPEKPEGHDYTLTTIFIIALGIPLVLTVLTLIDIAVGKHTQKHHE
Ga0207656_102794822	3300025321	Corn Rhizosphere	LRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0207692_100473483	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTPANEKPAGHDWTLDGIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0207692_107532382	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MGRRLSALVMGVLLPLALPAASWAATTTPPLEKPTGHDWTLDTIFVVALGIPLVLTILTLIDIAVGKHTSRREH
Ga0207688_100058992	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	LRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLIDIAVGKHTSKHE
Ga0207643_101371622	3300025908	Miscanthus Rhizosphere	LRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLIDIAVGKHTSKHE
Ga0207695_101121775	3300025913	Corn Rhizosphere	SPLRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0207671_110140882	3300025914	Corn Rhizosphere	LRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLIDIAVGKHTSK
Ga0207693_105013942	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MGVLLPLALPAASWAATTTPPLEKPTGHDWTLDTIFVVALGIPLVLTILTLIDIAVGKHTSRREH
Ga0207660_103088452	3300025917	Corn Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLIDIAVGKHTSKHE
Ga0207652_106542972	3300025921	Corn Rhizosphere	GGSPLRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0207650_101186444	3300025925	Switchgrass Rhizosphere	SSSGGSPLRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLIDIAVGKHTSKHE
Ga0207659_115938092	3300025926	Miscanthus Rhizosphere	VRRRLSAPLIAAYLLLVLPALAGAATTAPEKPEGHDYTLTTIFVVALGIPLILVILTLIDIAVGKHTGQHHE
Ga0207664_100776712	3300025929	Agricultural Soil	VRRRLAAPLIALYLTLALPAMAWAATSTGPEKPEGHDYTLTTIFVVALGIPLVLSILTLIDIAVGKHTQKHE
Ga0207664_103514032	3300025929	Agricultural Soil	VRRRLAAPLIALYFTLALPAVTWAATSSTNAPEKPEGHDYTLTTIFIIALGIPLVLTVLTLIDIAVGKHTQKHHE
Ga0207686_106123521	3300025934	Miscanthus Rhizosphere	SLMVVWRASSSGGSPLRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLIDIAVGKHTSKHE
Ga0207670_104545642	3300025936	Switchgrass Rhizosphere	LPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0207704_100048932	3300025938	Miscanthus Rhizosphere	LRRRHLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0207679_105378041	3300025945	Corn Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLV
Ga0207651_104979012	3300025960	Switchgrass Rhizosphere	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLILTILTLIDIAVGKHTSKHE
Ga0209178_10837722	3300027725	Agricultural Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0209074_100160784	3300027787	Agricultural Soil	PLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0307316_100648752	3300028755	Soil	LRRRYLAPLIALLLPLLLPAVTWAATTPANEKPAGHDWTLDGIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0307280_101579162	3300028768	Soil	VRRRYLAPLIALVLPLLLPAVTWAATTPANEKPAGHDWTLDGIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0307498_100357042	3300031170	Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPAGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0307497_107794112	3300031226	Soil	EVTPVRRRLSAPLIALYLLLVLPAMAFAAETAPEKAEGHDYTLDTIFVVALGIPLILALLTLIDIAVGKHSDKQH
Ga0307506_100589772	3300031366	Soil	VRRRYLAPLIALVLPLLLPAVSWAAATTSGTEKPAGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0170820_108095711	3300031446	Forest Soil	PLIALVLPLLLPAVSWAATTTSGTEKPAGHDWTLDSIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0307469_122083182	3300031720	Hardwood Forest Soil	LRRRYLAPLIALVLPLLLPAATWAATTSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0308175_1006148652	3300031938	Soil	LRRRYLAPLIALVLPLLLPAVTWAAATSGTEKPDGHDWTLDTIFVVALGIPLVLAILTLVDIAVGKHTSKHE
Ga0308175_1017438231	3300031938	Soil	SVRRRLAAPLIALYLTLALPALTWAATSTGSAPEKPEGHDYTLTTIFVVALGIPLVLTILTLIDIAVGKHTQKHQ
Ga0308176_101016022	3300031996	Soil	LRRRYLAPLIALVLPLLLPAVTWAAATSGTEKPDGHDWTLDTIFVVALGIPLILTILTLVDIAVGKHTSKHE
Ga0308176_110647021	3300031996	Soil	EVPTVRRRLSAPLIAVYLLLVLPALAFAADTAPEKPEGHDYTLTTIFVVALGIPLILVILTLIDIAVGKHTGKHH
Ga0308173_101788312	3300032074	Soil	VLPLLLPAVTWAATTSGTEKPDGHDWTLDTIFVVALGIPLVLTILTLVDIAVGKHTSKHE
Ga0307470_109117691	3300032174	Hardwood Forest Soil	LRRRYLAPLIALVLPLLLPAVTWAATTSGTEKPDGHDWTLDSIFVVALGIPLVLTILTLVDIAVGKHTSKHE
Ga0334722_100943292	3300033233	Sediment	MYLTLILPSVAFAATSTPEKPEGHDWTLDSIFIVALIIPVVLAVLTLIDIAVGKHSGKHH
Ga0247830_114587062	3300033551	Soil	RRLSAPLIAAYLLLVLPALAGAATTAPEKPEGHDYTLTTIFVVALGIPLILVILTLIDIAVGKHTGQHHE
Ga0372943_0000812_10211_10432	3300034268	Soil	VRRRLSAPLIALYLALVLPAVTWAATSTSSPEKPEGHDYTLDTIFVVALGIPLILALLSLIDVAVGKHTQKHQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081701

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign