Basic Information | |
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Family ID | F081499 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 114 |
Average Sequence Length | 40 residues |
Representative Sequence | VKVFSLENAYVVEQAQVIKNTEGSNEAIVTGEMADTPPGS |
Number of Associated Samples | 90 |
Number of Associated Scaffolds | 114 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 64.04 % |
% of genes near scaffold ends (potentially truncated) | 27.19 % |
% of genes from short scaffolds (< 2000 bps) | 80.70 % |
Associated GOLD sequencing projects | 86 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.26 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (62.281 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (19.298 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.070 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (32.456 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 26.47% β-sheet: 0.00% Coil/Unstructured: 73.53% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.26 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Sediment Lentic Freshwater Lake Sediment Freshwater Freshwater Sediment Lake Sediment Peatland Freshwater Wetlands Freshwater Wetlands Groundwater Soil Groundwater Marine Sediment Deep Subsurface Marine Marine Sediment Salt Marsh Salt Marsh Sediment Sediment, Intertidal Marine Sediment Seawater Hypersaline Lake Sediment Soil Sediment (Intertidal) Groundwater Sediment Marine Sediment Subsea Pool Soil Soil Arctic Peat Soil Soil Soil Soil Tropical Peatland Soil Soil Soil Peat Soil Petroleum Reservoir Landfill Leachate Anaerobic Digestor Sludge Hydrocarbon Resource Environments Enrichment Culture |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
B3_GZOS_CLC_01734600 | 2124908035 | Soil | VKVFSLENAYVVERAQVIKNTEGSNDAIVKGEMADTPPGS |
Bog_all_C_00352060 | 2140918008 | Soil | VKVFSPENPYFVEQAQVIKNTEGSNAAIVKGEMADTPPGS |
TB_LI09_3DRAFT_10573201 | 3300000229 | Groundwater | VKVFSPENAYVVEQAQGIKNPEGSNEAIVRGEMGDTPPGS* |
ML8_1008675 | 3300000491 | Lentic | VKAFSLENAYVVEKAQVVRNTEGSNESVVIGEMVDTPPGP* |
MLSed_1060201 | 3300000493 | Lentic | VKAFSLENAYAVEKAQVVRNTEGSNESVVIGEMVDT |
Draft_100835302 | 3300000558 | Hydrocarbon Resource Environments | VKVFSLENPYDVEQAQVIKNTEGSNEAIVKGXMADXPPGS* |
Draft_103541211 | 3300001580 | Hydrocarbon Resource Environments | VFSLENPYDVEQAQVIKNTEGSNEAIVKGKMADSPPGS* |
Draft_103546541 | 3300001580 | Hydrocarbon Resource Environments | VFSLENPYDVEQAQVIKNTEGSNEAIVKGEMADTPPGS* |
JGI24132J36420_100008158 | 3300002538 | Arctic Peat Soil | VKVFSPENPYVVERAQVIKNTEGSNEAIVTGEMADTPPGS* |
JGI24130J36418_100906801 | 3300002549 | Arctic Peat Soil | VKVFSLENAYVVERAQVLKTTEGSNDAIVTGEMADTPPGS* |
JGI24136J36422_101487571 | 3300002569 | Arctic Peat Soil | VKVFSLENAYVVERAQVFKVTEGSNDAIVTGEMADTPPGS* |
draft_109571641 | 3300002703 | Hydrocarbon Resource Environments | VKVFSLENPYDVEQAQVIKNTEGSNEAIVKGEMADTPPGS* |
draft_109572191 | 3300002703 | Hydrocarbon Resource Environments | VKVFSLENPYDVEQAQVIKNTEGSNEAIVKGKMADSPPGS* |
draft_110591263 | 3300002703 | Hydrocarbon Resource Environments | VKVFSLENAYDVELAQAIKNTEGSNDAIVKGEMVDTPPGS* |
Ga0031655_103363421 | 3300003852 | Freshwater Lake Sediment | KEFSLENAYVVERAQVIKNTEGSNEAIATGEMADTPPGS* |
Ga0070722_105049431 | 3300005601 | Marine Sediment | VKVFSPENAIIVEQAQVIKNMEGSNEAIVIGEMVETPPGS* |
Ga0078746_10974911 | 3300005821 | Marine Sediment | VKVFSPENAIIVEQAQVIKNMEGSNETIVIGEMVETPPGS* |
Ga0074469_111724221 | 3300005832 | Sediment (Intertidal) | VKVFSLENAYVVEQAQVVKNTEGSNEAIVIGEMVDTPPGS* |
Ga0074472_114043811 | 3300005833 | Sediment (Intertidal) | VKVFSPENAYGVEQAQVIKNTEGSNVVIVKGEMADTPPGS* |
Ga0066795_101563672 | 3300005938 | Soil | VKEFSLENPYVVERAQVIKNTEGSNEAIVKGEMADTPPGS* |
Ga0066795_102242732 | 3300005938 | Soil | VKVFSLENPYVVERAQVIKNTEGSNEAIVTGEMVDTPPGS* |
Ga0082037_10108803 | 3300006094 | Petroleum Reservoir | VKVFSPENTYVVEQAQVIKNTEGSNEAIVTGEKADTPPGS* |
Ga0079037_1015016932 | 3300006224 | Freshwater Wetlands | VKVFSPENAYVVEQVQVIKNTEGSNAVIVKGEMADTPPGS* |
Ga0075518_10477552 | 3300006972 | Arctic Peat Soil | VEVFSLENAYVVERAQVLKVTEGSNEAIDTGEMADTPPGS* |
Ga0111034_12384901 | 3300008517 | Marine Sediment | VKVFSLENAYVVEQAQVIKNTEGSNETIVIGEMVD |
Ga0115863_12444921 | 3300009034 | Sediment, Intertidal | RVKVFSLENAYVVEQAQVIKNMEGSNEAIVIGEMAETPPGS* |
Ga0115863_13814291 | 3300009034 | Sediment, Intertidal | VKVFSLENAYDVEQAQVIKNTEGSNEAIVRGEMAETPPGS* |
Ga0115863_13931571 | 3300009034 | Sediment, Intertidal | VFSPENAYGVERVDVVKNAEGSNEAIVIGEMAETPPGS* |
Ga0115863_16840931 | 3300009034 | Sediment, Intertidal | VKVFSLENAYVVEQAQVIKNTEGSNEAIVIGEMVDTPPGS* |
Ga0105152_100381062 | 3300009039 | Lake Sediment | VYSLENAYVVERAQVFKVTEGSNEAIVTGEMADTPPGS* |
Ga0105152_101268213 | 3300009039 | Lake Sediment | VKEFSPENANVVEQAQGIKNPEGSNEAIVKGEMADTPPGS* |
Ga0102851_103527012 | 3300009091 | Freshwater Wetlands | VKVFSPENAYGVEQAQVIKNTEGSNAVIVKGEMADTPPGS* |
Ga0118736_100068622 | 3300009135 | Marine Sediment | VKVFSLENAYVVEQAQVIKNTEGSNETIVIGEMAETPPGS* |
Ga0114921_100666011 | 3300009150 | Deep Subsurface | VFSFENAYVVEQAQVVKNTEGSNEAIVIGEMVETPPGS* |
Ga0114921_100938312 | 3300009150 | Deep Subsurface | VKVFSLENAYVVEQAQVVKNTEGSNETIVIGEMVDTPPGS* |
Ga0114921_106860481 | 3300009150 | Deep Subsurface | VKVYSSENANIVEQAQVIKNMEGSNETIDIGEMVEIPPGS* |
Ga0105101_103419401 | 3300009171 | Freshwater Sediment | FSPENAYVVEQAQGIKNPEGSNEAIVKGEMADTPPGS* |
Ga0103809_10503881 | 3300009388 | Enrichment Culture | VKVFSLENPYVVEQAQVIKNTEGSNEAIVKGEMADTLPGS* |
Ga0114930_105295611 | 3300009499 | Deep Subsurface | VKVFSLENAYVVEQAQVIKNMEGSNEVIVIGEMVEAPPGS* |
Ga0118731_1098805202 | 3300010392 | Marine | VKVFSPENAIIVEQAQVIKNMEGSNEAIVIGEMVETPLGS* |
Ga0116241_100869193 | 3300010429 | Anaerobic Digestor Sludge | VKVFSLENAYVVEQAQVIKNTEGSNDAIVKGEMADTPPGS* |
Ga0118733_1027157341 | 3300010430 | Marine Sediment | MVKVFSFENACVVEQAQVVKNTEGSNETIVIGEMVETPPGS* |
Ga0137843_10440142 | 3300010932 | Subsea Pool | VKVFSLENAYVVEQAQVVKNTEGSNEAIVIGEMADNPPGS* |
Ga0114922_107671412 | 3300011118 | Deep Subsurface | VKVFSLENAYVVEQAQVVKNTEDNNEVIIIGEMAETPSGS* |
Ga0137450_10584772 | 3300011407 | Soil | VKVFSLENAYDVERAQVIKNTEGSNDAIVKGEMVDTPPGS* |
Ga0153915_123141131 | 3300012931 | Freshwater Wetlands | ENANVVEQAQGIKNPEGSNEAIVKGEMADTPPGS* |
Ga0153916_109067702 | 3300012964 | Freshwater Wetlands | VKEFSLENANVVEQAQGIKNPEGSNEAIVKGEMADTPPGS* |
Ga0180007_106561071 | 3300014656 | Groundwater | VKVFSLENAYVVERAQVIKVTEGSNEAIVTGEMVDTPPGS* |
Ga0164310_105085041 | 3300014913 | Marine Sediment | SARVKVFSPENAIIVEQAQVIKNMEGSNEAIVIGEMVETPPGS* |
Ga0164311_104282861 | 3300014914 | Marine Sediment | MKVYNPKNALIVEQDQMIKNMEVSNKAIAIGEMVETPPGS* |
Ga0180009_100182672 | 3300015370 | Groundwater | VKVFSLENPYVVEQAQVIKNTEGSNEAIVTGEMADTPPGS* |
Ga0187877_13601831 | 3300017931 | Peatland | VKVFSPENVYVVEEVQGIKNPEGGNEAIVRGEMVDTPPGS |
Ga0180432_106249171 | 3300017989 | Hypersaline Lake Sediment | VYSLENGYVVGKTQVVKNTEESNEAIVMGKIVDTPPAQ |
Ga0187878_10637893 | 3300018005 | Peatland | VTAGRNPKWVKEFSLENAYVVERAQVIKNTEGSNEAIATGEMADTPPGS |
Ga0187866_12847542 | 3300018015 | Peatland | VKVFSLENAYVVEQAQGIKNPEGSNEAIVKGEMADTPPGS |
Ga0184616_100883301 | 3300018055 | Groundwater Sediment | VKEFSLENANVVEQAQVIKNTEGSNEAIVKGEMADTPPGS |
Ga0187773_106082512 | 3300018064 | Tropical Peatland | VKVFSPENAYGVEQAQVIKNTEGSNEVIVKGEMADTPPGS |
Ga0184636_10289732 | 3300018068 | Groundwater Sediment | VKEFSPENAKVVEQAQGIKNAEGSTEAIVKGEMADTPPGS |
Ga0184636_10825072 | 3300018068 | Groundwater Sediment | VKVFSLENAYVVERAQVIKNTEGSNEAIVKGEMADTPPGS |
Ga0187771_110493701 | 3300018088 | Tropical Peatland | VKVFSPENAYVVEQAQGIKNPEGSNEAIVKGEMADTPPGS |
Ga0212124_101745571 | 3300022553 | Freshwater | VFSPENPYVVEQAQVFKATEGSNDAIVKGETADTPPGS |
Ga0236339_12450431 | 3300022650 | Freshwater | VKVFSLENAYVVERAQVIKTTEGSNDAIVAGEMADTPPGS |
Ga0209978_103444541 | 3300024263 | Deep Subsurface | VKVFSLENAYVVEQVQVIKNMEGSNEAIVIGEMAETPPGS |
(restricted) Ga0233420_100179163 | 3300024300 | Freshwater | VKVFSPENAYGVEQAQVIKNTEGSNEAIVRGEMADTPPGS |
(restricted) Ga0255045_102078991 | 3300024528 | Seawater | VKVFSPENAIIVEQAQVIKNMEGSNEAIVIGEMVETPPGS |
Ga0209619_100733344 | 3300025159 | Soil | VKVSSPENAYVVEQGDVVRNTEYSNEAIVIGEKEVLS |
Ga0209211_100947404 | 3300025308 | Soil | VKVSSPENAYVVEQGDVVRNTEYSNEVIVIGEKEVLS |
Ga0209641_104522401 | 3300025322 | Soil | VKVSSPKNAYVVEQGDVVRNTEYSNEAIVIGEKEVLS |
Ga0209342_101911131 | 3300025326 | Soil | SLENPYVVERAQVIKNTEGSNDAIVKGEMVDTPPGS |
Ga0209125_10203601 | 3300025600 | Arctic Peat Soil | SVKVFSLENPYVVERAQVIKNTEGSNEAIVTGEMVDTPPGS |
Ga0209182_100214872 | 3300025843 | Lake Sediment | VKEFSPENANVVEQAQGIKNPEGSNEAIVKGEMADTPPGS |
Ga0209635_102896472 | 3300027888 | Marine Sediment | VKVFSLENAYVVEQAQVIKNTEGSNETIVIGKMVETPPGS |
Ga0209254_105588332 | 3300027897 | Freshwater Lake Sediment | VTAGRNPKWVKEFSLENAYVVERTQVIKNTEGSNAAIVKGEMADTPPG |
Ga0209668_103129093 | 3300027899 | Freshwater Lake Sediment | VKVFSLENAYVVEQAQVIKNTEGSNEAIVTGEMADTPPGS |
Ga0209253_101103931 | 3300027900 | Freshwater Lake Sediment | PENANGVEQAQVIKNTEGSNEVIVRGEMADTLPGS |
Ga0209253_101563881 | 3300027900 | Freshwater Lake Sediment | RVKVFSPENAYGVEQAQVIKNTEGSNAVIVKGEMADTPPGS |
Ga0209536_1016294441 | 3300027917 | Marine Sediment | VKVFSLENAYVVEQAQVIKNTEGSNEVIVIGEMAETPPGS |
Ga0265297_100819491 | 3300029288 | Landfill Leachate | VKVFSPENTYVVEQAQVIKNTEGSNEAIVTGEKADTPPGS |
Ga0265297_102470122 | 3300029288 | Landfill Leachate | SVKVFSPENTYVVEQAQVIKNTEGSNEAIVTGEKADTPPGS |
Ga0299915_106780241 | 3300030613 | Soil | VKEFSLENAYVVERAQVIKNTEGSNEAIATGEMADTPP |
Ga0315554_10390263 | 3300031255 | Salt Marsh Sediment | VKVFSLENAYVVEQAQVIKNMEGSNEAIVIGEMAETPPGS |
Ga0307437_11235971 | 3300031275 | Salt Marsh | VKVFSLENAYIVEQAHVIKNTEGSNETIVIGEMAETPPGS |
Ga0307380_104000912 | 3300031539 | Soil | VKVFSLENAYVVEQAQVIKNMEGSNEVIVIGEMAEAPPGS |
Ga0307379_100400673 | 3300031565 | Soil | VKVFSLENAYVVEQAQVIKNMEGSNEVIGIGEMAETPPGS |
Ga0315550_12090281 | 3300031653 | Salt Marsh Sediment | VKVFSLENAYIVEQAHVIKNTGGSNETIVIGEMAETPPGS |
Ga0315549_12938891 | 3300031654 | Salt Marsh Sediment | VKVYSLENAYVVEKAQVVKNTEGSNEAIVIGEMVDTPPGP |
Ga0315280_100045898 | 3300031862 | Sediment | VTAGRNPERVKEFSPENAYVVERAQGIKNPEGSNEAIVKGEMVDTPPGS |
Ga0315280_100646834 | 3300031862 | Sediment | PENAYVVEQAQGIKNPEGSNEAIVKGEMADTPPGS |
Ga0315280_100775843 | 3300031862 | Sediment | VKEFSPENAYVVEQAQGIKNPEGSNEAIVKGEMVDTPPGS |
Ga0315280_102366481 | 3300031862 | Sediment | VKEFSPENAYVVEQAQGIKNPEGSNEAIVKGEMADTPPGS |
Ga0214473_101031113 | 3300031949 | Soil | VTAGRNPKWVKEFSLENANVVERAQGIKNPEGSNEAIVKGEMADTPPGS |
Ga0214473_101966194 | 3300031949 | Soil | VKEFSPENANVVEQAQGIKNPEGSNEAIVKGEMVDTPPGS |
Ga0214473_103836382 | 3300031949 | Soil | MFSPENAYGVEQAQVIKNTGGSNAVIVKGEMADTPPGA |
Ga0315274_108111662 | 3300031999 | Sediment | VKVFSSENAYVVEPAQVIKNTEGANEAIVRGEMADT |
Ga0315296_105352881 | 3300032020 | Sediment | MVIPPEAGLTVKVFSLENANVVEQAQGIKNPEGSNAVIVKGEMADTPPGS |
Ga0315296_105354562 | 3300032020 | Sediment | VTAGRNPKWVKEFSLENANVVERAKGIKNPEGSNEAIVKGEMADTPPGS |
Ga0315284_106174092 | 3300032053 | Sediment | VKEFSLENANVVEQAQGIKNPEGSNEAIVKGEMADTPPGS |
Ga0315282_102455142 | 3300032069 | Sediment | VKEFSPENATVVEQAQGIKNPEGSNEAIVKGEMADTPPGS |
Ga0315277_110446892 | 3300032118 | Sediment | VKVFSPENAYGVEQVQVMKNTEGSNAVIVKGEMADTPPGS |
Ga0315295_102142131 | 3300032156 | Sediment | VKVFSPENAYGVEQAQVIKNTEGSNGVIVKGEMADTPPGS |
Ga0315295_105897511 | 3300032156 | Sediment | PENAKVVEQTQGIKNPEGSNEAIVKGEMADTPPGS |
Ga0315281_105224872 | 3300032163 | Sediment | VKVFSPENAYGVEQAQVIKNTEGSNAVIVKGEMADTPPGS |
Ga0315281_108311091 | 3300032163 | Sediment | VKELSPENAYVVEPAQGIKNPEGSNEAIGKGEMVDTPPES |
Ga0315281_111535541 | 3300032163 | Sediment | VKVFSLENAYGVERAQVMKNTEGSNEAIATGEMVDTPPGS |
Ga0315281_122418322 | 3300032163 | Sediment | FSPENAYGVEQAQVIKNTEGSNAVIVKGEMADTPPGS |
Ga0315283_102887443 | 3300032164 | Sediment | TAGRNPGRVKEFSPENANVVEQAQGIKNPEGSNEGIVRGEMADTSPGS |
Ga0315276_123491162 | 3300032177 | Sediment | KVFSLENAYVVERAQVFKATEGRNEAIVIGEMADTPPGS |
Ga0315287_102648972 | 3300032397 | Sediment | VKVFSLENAYVVEQAQVIKNTEGSNEAIVTGEMAETPPGS |
Ga0315275_102641412 | 3300032401 | Sediment | VKVFSPENAYGVEQAQVIKNTEGSNEAIVKGEMADTPPGS |
Ga0315273_118602851 | 3300032516 | Sediment | VKEFSLENANVVEQAQGIKNTEGSNEAIVKGEMEK |
Ga0315273_125328351 | 3300032516 | Sediment | KVFSPENAYVVEQAQGIKNPEGSNEAIVRGEMADTPPGS |
Ga0316622_1008743991 | 3300033416 | Soil | ARVKVFSPENAYVVEQAQGIKNPEGSNEAIVIGEMVDTPPGS |
Ga0326726_104521542 | 3300033433 | Peat Soil | VKVFSPENAYVVEQAQGIKNREGSNEAIVKGEMADTPPGS |
Ga0316629_113285971 | 3300033483 | Soil | VKVFSPENAYGVEQAQVIKNTEGSNEAVVKGEMADTLPGL |
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