Metagenome / Metatranscriptome Family F081309

Overview

Basic Information

• Family ID: F081309
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 114
• Average Sequence Length: 64 residues
• Representative Sequence: MWPIKRFMIRIEAPTWEDFEDVELPRLPLVGETIETKYGTCVVTQTDASPSTAPYQGKIVCRVP
• Number of Associated Samples: 94
• Number of Associated Scaffolds: 114

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 7.89 %
• % of genes near scaffold ends (potentially truncated): 32.46 %
• % of genes from short scaffolds (< 2000 bps): 92.11 %
• Associated GOLD sequencing projects: 89
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (91.228 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (26.316 % of family members)
• Environment Ontology (ENVO): Unclassified (36.842 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (42.105 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 39.13%
  Coil/Unstructured: 60.87%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.53.1.1: Ribosomal protein L25-like	d1feua_	1feu	0.64105
b.53.1.1: Ribosomal protein L25-like	d1dfup_	1dfu	0.63071
d.113.1.2: IPP isomerase-like	d1hzta1	1hzt	0.62929
b.168.1.1: HisI-like	d1zpsa1	1zps	0.62775
d.113.1.1: MutT-like	d1jkna1	1jkn	0.62618

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00027	cNMP_binding	19.30
PF08448	PAS_4	3.51
PF12728	HTH_17	2.63
PF00857	Isochorismatase	2.63
PF09118	GO-like_E_set	0.88
PF00483	NTP_transferase	0.88
PF07883	Cupin_2	0.88
PF00082	Peptidase_S8	0.88
PF13738	Pyr_redox_3	0.88
PF01551	Peptidase_M23	0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	2.63
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.63
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.88
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.88
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.88
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.88
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.88
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.88
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.88

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.23 %
Unclassified	root	N/A	8.77 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.23 %
Unclassified	root	N/A	8.77 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.23 %
Unclassified	root	N/A	8.77 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.67 %
Unclassified	root	N/A	8.77 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	57.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.51 %
Unclassified	root	N/A	8.77 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.18 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.39 %
Unclassified	root	N/A	8.77 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.51 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.51 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.88 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.88 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.88 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.88 %
Unclassified	root	N/A	8.77 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	14.91 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	4.39 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.91 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.51 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.88 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.88 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.88 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	4.39 %
Unclassified	root	N/A	8.77 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.91 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.51 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.88 %
Phytohabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans	0.88 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.88 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	4.39 %
Unclassified	root	N/A	8.77 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.91 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.51 %
Kribbella antibiotica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella antibiotica	0.88 %
Phytohabitans flavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans flavus	0.88 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	4.39 %
Unclassified	root	N/A	8.77 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.88 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.91 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.51 %
Kribbella antibiotica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella antibiotica	0.88 %
Phytohabitans flavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans flavus	0.88 %
Rhizobium sp. SEMIA 4085	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. SEMIA 4085	0.88 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	4.39 %
Unclassified	root	N/A	8.77 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000858|JGI10213J12805_10753037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550
3300000890|JGI11643J12802_10826454	All Organisms → cellular organisms → Bacteria → Terrabacteria group	865
3300000956|JGI10216J12902_100765403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	563
3300000956|JGI10216J12902_102615259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans flavus	1289
3300004114|Ga0062593_100089879	All Organisms → cellular organisms → Bacteria	2119
3300004114|Ga0062593_101207895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	794
3300004480|Ga0062592_101499439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	647
3300004643|Ga0062591_101725367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	636
3300005168|Ga0066809_10026876	All Organisms → cellular organisms → Bacteria	1198
3300005355|Ga0070671_100971730	All Organisms → cellular organisms → Bacteria	743

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.05%
Host-Associated	Host-Associated	28.95%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	9.65%
Plants	Host-Associated → Plants	28.95%
Terrestrial	Environmental → Terrestrial	61.40%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	1.75%
Freshwater	Environmental → Aquatic → Freshwater	0.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.91%
Roots	Host-Associated → Plants → Roots	0.88%
Sediment	Environmental → Aquatic → Sediment	8.77%
Soil	Environmental → Terrestrial → Soil	59.65%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.14%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.88%
Loam	Environmental → Terrestrial → Soil → Loam	5.26%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.02%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.63%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.51%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.14%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.63%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.88%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.75%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.14%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.26%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.02%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.63%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.63%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.75%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.75%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_107530371	3300000858	Soil	MWPIKRFLITIEAPNWKDFEDVELPRLPVVGETIETKYGTCLVTQTDSPPGTEPYEGKIVCRVP*
JGI11643J12802_108264542	3300000890	Soil	GLVASSCIMWLIKRFMIKVEAPTWEDFEDVELPRLPAVGETIETKYGTCVVTQTDASFGTAPYEGKIVCRVP*
JGI10216J12902_1007654031	3300000956	Soil	IKRFMIKIEAPAWEDFEDVELPRLPLVGETIETKYGTCLVTGTEASSGTAPYEGKIVCRVP*
JGI10216J12902_1026152592	3300000956	Soil	MWPIKRFMITIQAPTWQDFEDVELPRLPTVGETIETKYGTCLVTQTDASADTAPYQGKIVCRFP*
Ga0062593_1000898792	3300004114	Soil	MMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0062593_1012078951	3300004114	Soil	MDGDLPHLHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKI
Ga0062592_1014994392	3300004480	Soil	MWLIKRFMIKVEAPTWEDFEDVELPRLPAVGETIETKYGTCVVTQTDASFGTAPYEGKIVCRVP*
Ga0062591_1017253671	3300004643	Soil	MMWTIKRFMITIEAPGWKDVQDVELTRLPDVGETIETKYGTCLVTETDASPGPGPYAGKIVCRMP*
Ga0066809_100268763	3300005168	Soil	MCPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0070671_1009717301	3300005355	Switchgrass Rhizosphere	APTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP*
Ga0070700_1007766241	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	SCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0070663_1014844391	3300005455	Corn Rhizosphere	EDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP*
Ga0070698_1014414651	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MWTIKRFLITIETPDWEDFQDIELLRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRMP*
Ga0070699_1001267663	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MITIEAPAWEDVQDMELPRLPEVGETIETKYGTCLVTQTDASPGPGPYAGKIVCRMP*
Ga0070672_1003935402	3300005543	Miscanthus Rhizosphere	MWPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0070704_1008699242	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCPVP*
Ga0068864_1012030371	3300005618	Switchgrass Rhizosphere	QNERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0068866_104413022	3300005718	Miscanthus Rhizosphere	MDGDLPHLHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP*
Ga0068861_1022864972	3300005719	Switchgrass Rhizosphere	MWPIKRFLIRIEAPNWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP*
Ga0068870_112120832	3300005840	Miscanthus Rhizosphere	AEALSHAQNERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0074053_120023012	3300006575	Soil	MCPIKRFLIKFEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0074048_129454402	3300006581	Soil	VAIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0074062_126145272	3300006606	Soil	WEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0068865_1001320353	3300006881	Miscanthus Rhizosphere	MDGDLPHLHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDVSPTTAPYQGKIVCRVP*
Ga0111539_131060831	3300009094	Populus Rhizosphere	MIKIEAPTWEDVEDVELPRLPAVGTTIETKYGTCVVTQTDPSFTSAPYEGKIVCRVP*
Ga0105243_101856411	3300009148	Miscanthus Rhizosphere	LHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0126307_100732172	3300009789	Serpentine Soil	MHHVAIKRFMITIEAPAWKDFEDVELPRSPAVGETIETKYGTCLVTQTEPSPGTAPYEGKIVCRLP*
Ga0126305_102886361	3300010036	Serpentine Soil	DVELPRSPAVGETIETKYGTCLVTQTEPSPGTAPYEGKIVCRLP*
Ga0126311_117763111	3300010045	Serpentine Soil	MHHVAIKRFMITIEAPAWKDFEDVELPRSPVVGETIETKYGTCLVTQTDASPGTAPYEGKIVCRLP*
Ga0126319_16361141	3300010147	Soil	RRAAGRPERRATSSCIMWTIKRFMVTIETPDWEDFQDIELPRLPEVGETIETKYGTCLVTQTDASPGTSPYAGKIVCRRP*
Ga0134122_126259962	3300010400	Terrestrial Soil	MWTIKRFMITIETPNWEDFQDMELPRLPEVGETIETKYGTCLVTQTDASPGTSPYAGKIVCRLP*
Ga0137435_10662102	3300012232	Soil	VTIKRFMITIEAPNWKDVQDVELPRLPEIGETIETKYGTCFVTQTDASPGNGPYAGKIVCRMP*
Ga0164300_110174991	3300012951	Soil	HAQYERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0075312_10390581	3300014254	Natural And Restored Wetlands	MMWPIKRFMITIEAASWVDVEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPYQGKIVCRMP*
Ga0075326_10441303	3300014271	Natural And Restored Wetlands	MWPIKRFMITIEAASWVDVEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPYQGKIVCRMP*
Ga0075310_11512611	3300014302	Natural And Restored Wetlands	MWPIKRFMIRIEAPTWEDFEDVELPRLPEVGETIQTKYGTCVVTQTDASPSTAPYQGKIVCRLP*
Ga0163163_103395132	3300014325	Switchgrass Rhizosphere	MDGDLPHLHHVPIKRFLIKIEAPTWEDFVDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP*
Ga0157380_103957241	3300014326	Switchgrass Rhizosphere	HRAAEALSHAQNERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0173478_104849692	3300015201	Soil	EPPANERQGIPSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVMETDASFNSAPYEGKIVCRVP*
Ga0132258_105021434	3300015371	Arabidopsis Rhizosphere	MSLIKRFMIKIEAPTWEDVEDVELPRLPAVGSTIETKYGTCVVTETDASFGSAPYEGKIVCRVP*
Ga0132258_113157191	3300015371	Arabidopsis Rhizosphere	MGVARAVGYLAMHHVAIKRFLIKIEAPSWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0132258_125532512	3300015371	Arabidopsis Rhizosphere	MMWLIKRFMIRIEAPTWEDVEDVELPGLPAVGATIETKYGTCVVTETDASFGTAPYEGKIVCRVP*
Ga0132258_138155472	3300015371	Arabidopsis Rhizosphere	MMWRIKRVMITIEGPGWEDFEEVELLQLPVVGEAIETKYGTCLVTQTDSLPGTEPYEGKIVCRTA*
Ga0132256_1019990752	3300015372	Arabidopsis Rhizosphere	MHHVAIKRFLIKIEAPSWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0132257_1010800233	3300015373	Arabidopsis Rhizosphere	MMCPIKRFLIRIEAPSWEDFEDVELPHLPVVGETIETKYGTCLVTETDASPDTVPYQGKIVCRVP*
Ga0132257_1025875642	3300015373	Arabidopsis Rhizosphere	MGYLAMHHVAIKRFLIKIEAPSWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRTG*
Ga0132255_1039502132	3300015374	Arabidopsis Rhizosphere	MITIEGAGWEDFEEVELLQLPVVGETIETKYGTCLVTQTDSPPRTEPYDGKIVC*
Ga0190266_100114392	3300017965	Soil	MVTIETPDWEDFQDIELPRLPVVGETIETKYGTCLVTQTDASPGAAPYAGKIVCRRP
Ga0184638_11323863	3300018052	Groundwater Sediment	MWTIKRFMITIETPDWEDFQDIELPRLPEVGETIETKYGTCLVTQTDASPGTAPYAGK
Ga0184626_102721053	3300018053	Groundwater Sediment	GLREGRNAQATSSCIMWTIKRFMITIETPDWEDFQDIELPRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRRP
Ga0184635_103373391	3300018072	Groundwater Sediment	MWTIKRFMITIETPDWKDVQDTELPRLPEVGETIETKYGTCLVTQTDASPGTAPYAGKIVCRRP
Ga0184624_101600061	3300018073	Groundwater Sediment	MVTIQAPTWEDFEDVELPRLPGVGETIETKYGTCLVTETDASSGTAPYQGKIVCRIP
Ga0184624_103100931	3300018073	Groundwater Sediment	ITIETPDWEDFQDIELLRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRLP
Ga0184632_103329591	3300018075	Groundwater Sediment	MWTIKRFMITIETPDWEDFQDIELPRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRRP
Ga0184609_105512301	3300018076	Groundwater Sediment	MWTIKRFMITIETPDWEDFQDIELPRLPEVGETIETKYGTCLVTKTDASPGTAPYAGKIVCRRP
Ga0184612_102039241	3300018078	Groundwater Sediment	MWTIKRFMITIETPDWEDFQDIELPRLPVVGETIETKYGTCLVTKTDASPGTAPYAGKIVCRRP
Ga0190265_118151521	3300018422	Soil	IKTFMITIQAPTWEDFEDLELPPLPMVGETIETKYGTCLVTQTDASSGTAPYQGKIVCRI
Ga0190268_100530333	3300018466	Soil	MITIQAPAWEDVESVELPRLPAVGETIETKYGTCLVTQADASSDTGPYQGKIVCRFP
Ga0190268_109976362	3300018466	Soil	MWPIKRFMITIQAPTWEDFEDVELPRLPVVGETVETKYGTCLVTQADASSGTAPYQGKIVCRIP
Ga0190270_1000013323	3300018469	Soil	MWPIKRFMIRIEAPTWEDFEDVELPRLPLVGETIETKYGTCVVTQTDASPSTAPYQGKIVCRVP
Ga0190270_100122704	3300018469	Soil	MIKIETPDWEDVEDVELTRLPLVGETIETKYGTCLVTETDESSGTVPYAGKIVCRLP
Ga0190270_101016542	3300018469	Soil	MWTIKRFMITIETPEWKDVQDVELPRLPVIGETIETKYGTCLVTQTDASPGNGPYAGKIVCRMP
Ga0190270_104146871	3300018469	Soil	MWTIKRFMITIDTPDWEDFQDIELPRLPVVGETIETKYGTCVVTQTEASPGTAPYAGKIVCRRP
Ga0190270_111228602	3300018469	Soil	MITIQAPTWEDFEDVELPRLPLVGETIETKYGTCLVTQTDSSSDTAPYQGKIVCRIP
Ga0190270_121728111	3300018469	Soil	MWTIQRFLITIETPDWKDVQDVELPRLPEVGATIETKYGTCLVTQTDASPGTGQYAGKIVCRMP
Ga0190271_100387082	3300018481	Soil	MIRIEAPTWEDFEDVELPRLPVVGATIETKYGTCVVTQADASSDSAPYQGKIVCRVP
Ga0190271_109147963	3300018481	Soil	MVTIQAPTWEDFEDVELPRLPVVGETIETKYGTCLVTETDASSDTAPYQGKIVCRIP
Ga0173481_102484912	3300019356	Soil	MWLIKRFMIKVEAPTWEDFEDVELPRLPAVGETIETKYGTCVVTQTDASFGTAPYEGKIV
Ga0193751_12190641	3300019888	Soil	MALSVIMRPLPRYMITIEGTNWKDSQDVELPRLPGEGETIETKYGTCLVTHTDPLPDSQQYSGKILCRFPG
Ga0222622_103686652	3300022756	Groundwater Sediment	MWTIKRFMITIEAPNWKDVQDVELPRLPEVGETIETKYGTCFVTQTDTSPGTGPYAGKIVCRMP
Ga0207657_111783322	3300025919	Corn Rhizosphere	MMFVIKRFMIRIEAPAWQDVEDVELPRLPSVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207659_107909521	3300025926	Miscanthus Rhizosphere	MDGDLPHLHHVPIKRFLIKIVAPTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP
Ga0207687_103003172	3300025927	Miscanthus Rhizosphere	MDGDLPHLHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP
Ga0207690_105876202	3300025932	Corn Rhizosphere	MMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207709_105184892	3300025935	Miscanthus Rhizosphere	MDGDLPHLHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTATDASSGTAPYQGKIVCRVP
Ga0207691_103563212	3300025940	Miscanthus Rhizosphere	MWPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP
Ga0207711_119397591	3300025941	Switchgrass Rhizosphere	IRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207640_111389462	3300025981	Corn Rhizosphere	MFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207708_107157631	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	NERQSILSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207708_109117312	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	SCIMWTIKRFMITIETPNWKDFQDMELPRLPDVGETIETKYGTCLVTQTDASPGPGPYAGKIVCRLP
Ga0207676_110557342	3300026095	Switchgrass Rhizosphere	QNERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207683_106102813	3300026121	Miscanthus Rhizosphere	PAVQSASPCGRSAESRANERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0247828_110053982	3300028587	Soil	MWPIKRFMIRIEAPSWEDFEDVELPRLPVVGETIQTKYGTCLVTQTDASPSTAPYEGKIVCRLP
Ga0247818_113946251	3300028589	Soil	MGYLAMHHVAIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0247822_107442792	3300028592	Soil	MWPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0307317_102040452	3300028720	Soil	MITIEAPNWKDVQDVELPRLPEVGETIETKYGTCFVTQTDTSPGTGPYAGKIVCRMP
Ga0307318_102084082	3300028744	Soil	MWTIKRFMVTIETPDWEDFQDIELPRLPVVGETIETKYGTCLVTQTDASPGTGPYAGRIVCRMP
Ga0307320_102354401	3300028771	Soil	MWTIKRFMVTIETPDWEDFQDIELPRLPVVGETIETKYGTCLVTKTDASPGTAPYAGKIVCRRP
Ga0307287_101737003	3300028796	Soil	EGRNAEATSSCIMWTIKRFMITIETPAWEDVQDIELSRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRMP
Ga0307503_101083612	3300028802	Soil	MWTIKRFMITIATPSWEDFQDMELPRLPEVGETIETKYGTCLVTQTDASPGTSPYAGKIVCRLP
Ga0307503_101906281	3300028802	Soil	VTIKRFMITIEAPNWKDVQDVELPRLPEVGETIETKYGTCFVTQTDASPGNGPYAGKIVCRMP
Ga0307503_102205482	3300028802	Soil	MHHVAIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0307503_108126602	3300028802	Soil	MITIEAPNWKDVQDVELPRLPEIGETIETKYGTCFVTQTDASPGNGPYAGKIVCRMP
Ga0307281_103153932	3300028803	Soil	MWTIKRFMITIEAPNWKDVQDVELPRLPEVGETIETKYGTCFVTQTDASPGTGPYAGKIVCRMP
Ga0307302_101249543	3300028814	Soil	MWTIKRFMITIETPAWEDVQDIELPRLPEVGETIETKYGTCLVTKTDASPGTAPYAGKIVCRRP
Ga0307310_102841172	3300028824	Soil	MWTIKRFLITIETPDWKDVQDVELLRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRMP
Ga0307304_104909082	3300028885	Soil	RFLITIETPDWKDVQDVELLRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRMP
Ga0247827_104895362	3300028889	Soil	MWPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSATAPYQGKIVCRVP
Ga0299907_102891042	3300030006	Soil	MWPIKRFMITIEAASWVDVEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPYQGKIVCRMP
Ga0307497_100964253	3300031226	Soil	EDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0299914_103176282	3300031228	Soil	MWPIKRFMITIEAASWVDVEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPY
Ga0299913_102064435	3300031229	Soil	RPVTAPLPATGPAPCCIMWPIKRFMITIEAASWVDVEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPYQGKIVCRMP
Ga0307413_117981531	3300031824	Rhizosphere	CPAASRPGYGGFHRPDIMGLIKRFLIRIEAPSWEDFEHVELPRLPVVGETIETKYGTCVVTETDASSETAPYEGKIVCRMP
Ga0310907_106468212	3300031847	Soil	TWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0307409_1007053292	3300031995	Rhizosphere	MWPIKRFMITIQAPTWQDFEDVELPRLPTVGETIETKYGTCLVTQTDASADTAPYQGKIVCRFP
Ga0310890_112042071	3300032075	Soil	IMWPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0307415_1019047012	3300032126	Rhizosphere	MGLIKRFLIRIEAPSWEDFEHVELPRLPVVGETIETKYGTCVVTETDASSETAPYEGKIVCRMP
Ga0307470_110521231	3300032174	Hardwood Forest Soil	PRLPEVGETIETKYGTCLVTQTDASPGTSPYAGKIVCRLP
Ga0310889_106539552	3300032179	Soil	VAIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0247829_108099121	3300033550	Soil	MWPIKRFMITIEAASWVDIEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPYEGKIVCRMP
Ga0247829_110846481	3300033550	Soil	APTWEDFEDVELPRLPAVGETIETKYGTCVVTQTDASFGATPYEGKIVCRVP
Ga0247829_117285441	3300033550	Soil	MIRIEAPTWEDFEDVELPRLPAVGETIETKYGTCVVTQTDASFGATPY
Ga0364929_0258226_430_588	3300034149	Sediment	MWTIKRFMITIEAPNWKDVQDVELPRLPEVGETIETKYGTCFVTQTDASPGTG
Ga0364943_0336684_13_186	3300034354	Sediment	MITIETPAWEDVQDIELPRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRMP