Basic Information | |
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Family ID | F081300 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 114 |
Average Sequence Length | 47 residues |
Representative Sequence | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLSMRDHDGRYG |
Number of Associated Samples | 97 |
Number of Associated Scaffolds | 114 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 37.17 % |
% of genes near scaffold ends (potentially truncated) | 98.25 % |
% of genes from short scaffolds (< 2000 bps) | 93.86 % |
Associated GOLD sequencing projects | 92 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.66 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (69.298 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (13.158 % of family members) |
Environment Ontology (ENVO) | Unclassified (32.456 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (48.246 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 18.31% β-sheet: 15.49% Coil/Unstructured: 66.20% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.66 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Peatland Peatland Soil Watersheds Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Surface Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Permafrost Soil Grasslands Soil Grass Soil Soil Soil Hardwood Forest Soil Soil Soil Rice Paddy Soil Tropical Peatland Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Sandy Soil Avena Fatua Rhizosphere Corn Rhizosphere Populus Rhizosphere Corn Rhizosphere Corn Rhizosphere Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
L02_05710980 | 2170459007 | Grass Soil | MTPWRVVIVTRILPVALGFHAALSEAGHEPVGLLTIRDTDGRYGGF |
L02_06337960 | 2170459007 | Grass Soil | MTPWRVVIVTRILPVALGFHAALSEAGHEPVGLLTIRDTDGRYGGFD |
JGI11615J12901_100993561 | 3300000953 | Soil | VSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDHDGRYGNLP |
C688J18823_100287721 | 3300001686 | Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDADGRYGNLPDTGELVLSAAPGLDVL |
C688J18823_105102281 | 3300001686 | Soil | MSLRVGIVTRIPPVLAAFDAVVRATGHEPVAFLTMRDVDGRYGPPADT |
C688J18823_107593452 | 3300001686 | Soil | MSSWRVVIVTRVFPVAVGFHEALRELGHEPVALLTVRDTTGRY |
C688J18823_108212162 | 3300001686 | Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDHDGRYGNLPD |
Ga0066675_101940474 | 3300005187 | Soil | MRLRVVIVTRIPPVLAAFDAVVRGMGHEPVAFLTMRNVDGRYGPP |
Ga0066388_1009880011 | 3300005332 | Tropical Forest Soil | MSWRVVIATRVAPVLAGFDAVIREAGHEPVALMTVRDSDDRYGNLPET |
Ga0070660_1014782852 | 3300005339 | Corn Rhizosphere | MRVVLVTRILPVALGFHAAVRESGYDAVALLTIRDPERRYGS |
Ga0070661_1002709013 | 3300005344 | Corn Rhizosphere | MSWRIVIVTRIAPVLAGFDAVVRDAGHEPVALMSMRDVDGRYGSLPDIGELVTSAAPELD |
Ga0070671_1012136842 | 3300005355 | Switchgrass Rhizosphere | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALMSMRDQDGRYGNLPDIGELVMS |
Ga0070671_1021255881 | 3300005355 | Switchgrass Rhizosphere | VSAWRVVIVTRVFPVAVGFDATLRELGHEPVALLTVRDTSGR |
Ga0070659_1011693412 | 3300005366 | Corn Rhizosphere | MSWRVVIVTRISPVLAGFDAVVRAAGHEPVALMSMRDHDGRYGGLPDIGELVLSAAP |
Ga0070709_101608361 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | VTWRVVIVTRIAPVLAGFDAVVREAGHEPVALLTKRNVDARYGPAAEMT |
Ga0070698_1019205541 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MSLRVVVVTRIPPVLAGFDAVIREAGHEPVAFLTMRNVDGRYGPSEQTGELVMGA |
Ga0073909_100525054 | 3300005526 | Surface Soil | MSWRVVIVTRIAPVLAGFDAVVRAVGREPVALMSMRDHDGRYGNLPDVGELVMSAAP |
Ga0073909_100827954 | 3300005526 | Surface Soil | MSWRVVIVTMIPPVLIGFDAVLREAGHQPVALLTMRGR |
Ga0070741_101808391 | 3300005529 | Surface Soil | MSLRVVIVTRIPPVLAGFDAVVRDAGHEPIAFLTMRNVDGRYGPI |
Ga0070697_1006270291 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MVPPAPWRVVIATRVLPIALGFSAALREAGHEPVGLLTVRDASGRYGGF |
Ga0070733_107485281 | 3300005541 | Surface Soil | VRVVVVTRIPPVLAGFDAVAREAGHEVVAFLTMRDTDGRYGPQALTDQLVMGAAPDL |
Ga0066699_106675642 | 3300005561 | Soil | VSLRAVIVTRILPVALGFDAVLRGAGHEPVGLLTI |
Ga0066693_103638192 | 3300005566 | Soil | MSMRVVIVTRIPQVLAGFDAVVRELGHEVVALLTNRIVLGGGGPG |
Ga0066705_102817743 | 3300005569 | Soil | VRVVVTTRILPVALGFDAVVREAGHEPVALLTIRDTDSR |
Ga0066694_100793221 | 3300005574 | Soil | MSLRVVIVTRISPVLAGFDAVVRDAGHEPVALMSMRDHDGRYGNL |
Ga0075274_10166042 | 3300005901 | Rice Paddy Soil | MSWRIVIVTRIAPVLAGFDAVVRDAGHEPVALLSMRDSDGRYGALPGTGELVTSAAPELD |
Ga0075273_101135461 | 3300005902 | Rice Paddy Soil | MSWRIVIVTRIAPVLAGFDAVVRDAGHEPVALLSMRDSDGRYGALPGTG |
Ga0070717_115784182 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | VSLRVVIVTRVPPVLVGFDGVIREAGHEVAGFLTMRN |
Ga0066696_107227422 | 3300006032 | Soil | MSLRVVIVTRIPPVLAAFDAVVRGTGHEPVAFLTMRNVDGRYGPPADTGDLVLAA |
Ga0066656_104490681 | 3300006034 | Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDADGRYGNLP |
Ga0066652_1005907002 | 3300006046 | Soil | MTPKPPWRVVIATRVLPVALGFHATLREAGHEPVALLTIRDADGRYGG |
Ga0075026_1003289392 | 3300006057 | Watersheds | MPASPPWRVAIVTRILPVALGFYAAVREAGHEPVALLSIRDTDGRYGLM |
Ga0074060_118513292 | 3300006604 | Soil | MSFRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDNDGRYGDLPETGELVMSAA |
Ga0074060_118515502 | 3300006604 | Soil | MSWRVVIVTRIAPVLAGFDSVVRAAGHEPIALLTMRDSDGRYGDLPETGELVMSAA |
Ga0079222_110220811 | 3300006755 | Agricultural Soil | MSLRVVICTRIPPVLAGFHAVVQEAGHETVALLTNRV |
Ga0066658_103902112 | 3300006794 | Soil | MSWRVVIVTRILPVLAGFDAVVRAAGHEPVALLTMRDADGRYGNLPDTGELVMGA |
Ga0066659_103168842 | 3300006797 | Soil | MAPPAPWRVVIATRVLPVVLGFSAALREAGHEPVALLTVRDPSGRYGSFDL |
Ga0066659_113479051 | 3300006797 | Soil | MSLRVVIVTRIPPVLAGFDGVIREAGHEVVGFLTMRNVDGRYGPPSLTDELVMGAADDLDVLLPA |
Ga0066659_118485752 | 3300006797 | Soil | VSLRAVIVTRILPVALGFDAVLRGAGHEPVGLLTIRDTK |
Ga0079219_111280822 | 3300006954 | Agricultural Soil | MTTRWRVVIVTRIPPVALGLHAAAKGAGHEPVALLTVRDPSRR |
Ga0075423_129597491 | 3300009162 | Populus Rhizosphere | MRLRVVIVTRIPQVLAGFDAVIREAGHEPVAFLTMRNVDVRYGPLEQTNEL |
Ga0105237_118941262 | 3300009545 | Corn Rhizosphere | MSLRVVIVTRIPPVLQAFDAVVRDTGNEPVAFLTMR |
Ga0105238_122835211 | 3300009551 | Corn Rhizosphere | MSWRVVIATRIPPVLVGFDAVIREAGHEPVGFLTTRNLDGR |
Ga0127503_100479291 | 3300010154 | Soil | MTPWRVVIVTRILPVALGFHAALREAGHEPVALLTIRD |
Ga0134067_101916562 | 3300010321 | Grasslands Soil | VSLRAVIVTRILPVALGFDAVLRGAGHEPVGLLTIR |
Ga0134067_103274401 | 3300010321 | Grasslands Soil | MRLRVVIVTRIPPVLAAFDAVVRGTGHEPVTFLTMRNVDGRYGPPADTGDLVM |
Ga0134064_102672372 | 3300010325 | Grasslands Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLSMRDHDGRYG |
Ga0134065_100462331 | 3300010326 | Grasslands Soil | MSLRVVIVTRIPPVLAAFDAVVRGTGHEPVAFLTMRNVDGRYGPPADTGDLVLAAADELDVLLPA |
Ga0126378_117759842 | 3300010361 | Tropical Forest Soil | MSLRVAIVTRIAPVLAGFDPVVRAAGHEPVALLSMRD |
Ga0134066_102652771 | 3300010364 | Grasslands Soil | MSLRVVIVTCISPVLAAFDAVVRGTVHEPVAFLTMRNVDGRYGPPADT |
Ga0134125_119615121 | 3300010371 | Terrestrial Soil | MSLRVVIVTRIPPVFQAFDAVVRDTGNQPVAFLTMRNVDGRYGPPGTPATS* |
Ga0134125_127408031 | 3300010371 | Terrestrial Soil | MNLRVVIATRIAPVLAGFEAVVREAGHEPVALLTLRNA |
Ga0105239_116760222 | 3300010375 | Corn Rhizosphere | VSWRVVIVTRILPIALGFDAAIREAGHESVALLTIRDPEKRYGPWDLAGLV |
Ga0134127_115999431 | 3300010399 | Terrestrial Soil | MSWRVVIVTRISPVLAGFDAVVRAAGHEPVALMSMRDHDGRYGSLPDIGELVLSAAPELD |
Ga0120174_10316316 | 3300012008 | Permafrost | MSWRVVIVTRIPPVIAGFDGVVREAGHEPVALLTMRN |
Ga0137379_104464453 | 3300012209 | Vadose Zone Soil | MSWRVVIVTRIPPVLLGFDAVIRDAGHESVAFLTMRNADGRYGPVSHTG |
Ga0150985_1032398412 | 3300012212 | Avena Fatua Rhizosphere | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDHDGRYGNLP |
Ga0137370_103708351 | 3300012285 | Vadose Zone Soil | MSLRVVIVTRIPPVLAAFDAVVRGTGHEPVAFLTMRNVDGRYGPPADTGDLVLAAAD |
Ga0137366_106824452 | 3300012354 | Vadose Zone Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHDPVALLSMRDHDGRYGNLPDIGELVM |
Ga0137371_100148931 | 3300012356 | Vadose Zone Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHAPVALLSMRD |
Ga0137371_105297281 | 3300012356 | Vadose Zone Soil | VIATRILPVALGFHATLREAGHEPVALLTIRDTDGRYGGFELGPMLQ |
Ga0137371_112723161 | 3300012356 | Vadose Zone Soil | MTPAAPWRAVIVTRILPVVLGLYGALREAGHEPVALLTVRDNDGR |
Ga0137385_106423912 | 3300012359 | Vadose Zone Soil | VIVTRILPVVLGLYGALREAGHEPVALLTVRDAEG |
Ga0137398_105706771 | 3300012683 | Vadose Zone Soil | MAPPAPWRVVIATRVLPIALGFSAALREAGHEPVALL |
Ga0137404_115574941 | 3300012929 | Vadose Zone Soil | VQPSPPWRVAIVTRILPVALGFYAVAREAGHEPVALLSIRDSDGR |
Ga0126369_112243152 | 3300012971 | Tropical Forest Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDHDG |
Ga0164308_118971162 | 3300012985 | Soil | MSWRVVIVTRVSPVLAGFDAVVRAAGHEPVALLSMRDHDGRYGSLPDIGEL |
Ga0164304_112063391 | 3300012986 | Soil | MSLRVAIVTRIPPVLQAFDAVVRDTGNEPVAFLTMRNVDGRYG |
Ga0157373_106289602 | 3300013100 | Corn Rhizosphere | MTPAAPWRAVIVTRILPVVLGLYGTLREAGHEPVALLT |
Ga0157369_114755152 | 3300013105 | Corn Rhizosphere | MRVVLVTRILPVALGFHAAVRESGYDAVALLTIRDPERRYGSWDLAAL |
Ga0137403_114739731 | 3300015264 | Vadose Zone Soil | VIVTRILPVALGFDAAVREAGHHPVALLSIRDSDRRYGPMGG |
Ga0187778_113098562 | 3300017961 | Tropical Peatland | MSWRVVIVTRIPPVLEGFDAVVRAAGHEPVALLTMRNVDGRYG |
Ga0187862_108600812 | 3300018040 | Peatland | VIPQPPWRVVIVTRIPPVVAGFLAAVREVGHEPVALLTIRDVGARYGTEFTTD |
Ga0187773_111967471 | 3300018064 | Tropical Peatland | VTAVPKPPWRVAIVTRLLPVLLAFDSALREAGHDPVALV |
Ga0066669_101787853 | 3300018482 | Grasslands Soil | LSWRVVIVTRVLPVALGFYEAVREAGHEPVALLTI |
Ga0173482_104184632 | 3300019361 | Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALMSMR |
Ga0206354_101689441 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | MSWRVVIVTRIAPVLAGFDGVVRAAGHEPVALMSMRDQDGRYGNLPDIG |
Ga0206354_108601201 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | VSWRVVIVTRILPVALGFDAAIREAGHESVALLTIRDAEKRYGPW |
Ga0179590_11579392 | 3300020140 | Vadose Zone Soil | MSAPSWRVVIVTRILPVALGFHAALREAGHTPVGLLTIRDTDGRYGG |
Ga0247672_10283792 | 3300024187 | Soil | MSLRVVIVTRIPPVLQAFDAVVRDTGNEPVAFLTMRNVDGRYGPPSDTGDVVMT |
Ga0247674_10466251 | 3300024275 | Soil | MSLRVVIVTRIPPVLQGFDAVVRDTGNEPVAFLTMRNVDGRYGPPADTGDVVMT |
Ga0208692_10407283 | 3300025472 | Peatland | VIPQPPWRVVIVTRIPPVVAGFLAAVREVGHEPVALLTIRDVGARYGTE |
Ga0207680_110573531 | 3300025903 | Switchgrass Rhizosphere | MSWRVVIVTRIAPVLAGFDGVVRAAGHEPVALMSMRDQDGRYGNLPDVGELVMSAA |
Ga0207652_117642162 | 3300025921 | Corn Rhizosphere | MSWRVVIVTRISPVLAGFDAVVRAAGHEPVALMSMRDHDGRYGSLPDIGELVLSAAPDLDVL |
Ga0207646_101887591 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | VQLSPPWRVAIVTRILPVALGFYAVVREAGHEPVALLSIR |
Ga0207690_100297061 | 3300025932 | Corn Rhizosphere | MIPPAPWRVVIVTRILPVVLGMHGALREAGHEPVALLTVRDNDGRY |
Ga0207665_113152982 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MTWRVVIVTRIAPVLAGFDAVVRDVGHEPVALMSMRDHD |
Ga0207639_109825911 | 3300026041 | Corn Rhizosphere | MTPAAPWRVVIVTRILPVVLGFYGALREAGHEPVALLTVRDNDGRYGGFEL |
Ga0207702_102953761 | 3300026078 | Corn Rhizosphere | MSLRVVIVTRIPPVLQAFDAVVRDTGNEPVAFLTMRNVDGRYGPPSDTGDVVM |
Ga0207698_108533471 | 3300026142 | Corn Rhizosphere | MSWRVVIVTRIAPVLAGFDAVVRDAGHEPVALMSMRDVD |
Ga0207698_117523692 | 3300026142 | Corn Rhizosphere | MRVVLVTRILPVALGFHAAVRESGYDAVALLTIRDPERR |
Ga0207698_121663202 | 3300026142 | Corn Rhizosphere | VSWRVVIVTRILPVALGFDAAIREAGHESVALLTIRDPEQRYGPWDLAG |
Ga0209238_12224692 | 3300026301 | Grasslands Soil | VSLRAVIVTRILPVALGFDAVLRGAGHEPVGLLTIRDTENRY |
Ga0209377_12504251 | 3300026334 | Soil | MSLRVVIVTRIPPVLAGFDGVIREAGHEVVGFLTIRNV |
Ga0209807_11222603 | 3300026530 | Soil | VRVVVTTRILPVALGFDAVVREAGHEPVALLTIRDTD |
Ga0209177_105115412 | 3300027775 | Agricultural Soil | MAWRVVIATRILPVALGFDAAIREAGHEPVALLTIRDLGGLYLDGSLH |
Ga0209811_100145994 | 3300027821 | Surface Soil | MSWRVVIVTRIAPVLAGFDAVVRAVGREPVALMSMRDHDGRYGNLPDVGELR |
Ga0209488_106124192 | 3300027903 | Vadose Zone Soil | MSLRVVIVTRIPPVLAAFDAVVRGTGHEPVAFLSMRNVDGRYGPPADTGDLVMAAADELDVLLPAH |
Ga0265319_11503221 | 3300028563 | Rhizosphere | VQPSPPWRVAIVTRILPVALGFYAAVREAGHEPVALLSISDTDRRY |
Ga0265322_100432862 | 3300028654 | Rhizosphere | MSWRVVIVTRIPPVLAGFDEAIRERGHKPVGLLTMLDRD |
Ga0307310_101075621 | 3300028824 | Soil | MTPAMPWRVAIVTRILPVVLGFYSSLRGAGHEPVALLTVRD |
Ga0265320_100280011 | 3300031240 | Rhizosphere | VVPQPPWRVVIVTRIPPVAVGFHAAVSEAGHEPVALLTIRDTDSRYGQEFTTPDL |
(restricted) Ga0255312_11762421 | 3300031248 | Sandy Soil | VRVVLTTRILPVAVGFDAVLRAAGHEPVGLLTIRDAGNRYGSEFTL |
Ga0318573_104361742 | 3300031564 | Soil | MSLRVVIVTRIPPVLAAFDAVVRATGNEPVALLSMRNADGRYGPVADTGEL |
Ga0318521_107426082 | 3300031770 | Soil | MSLRVVIVTRIPPVLAAFDAVVRATGNEPVALLSMRNADGRYGPVADTGELVLD |
Ga0318557_103460971 | 3300031795 | Soil | MSLRVVIVTRIPPVLAAFDAVVRATGNEPVALLSMRNADGRYGPVADTGELVLGAADELD |
Ga0318564_101962601 | 3300031831 | Soil | MSLRVVIVTRIPPVLAAFDAVVRATGNEPVALLSMRNADGRYGPVADTGELV |
Ga0308175_1003189061 | 3300031938 | Soil | MSWRVVIVTRIAPVLTGFDAVVRAAGHEPVALLTMRDHAGRYGNLPDIGQLVLSAAP |
Ga0308175_1011225752 | 3300031938 | Soil | MSWRVVIATRILPVLDGFYAAVRDAGHEPVALLTMRIVDERYGAI |
Ga0318562_100716761 | 3300032008 | Soil | MSLRVVIVTRIPPVLAAFDAVVRATGNEPVALLSMRNADGRYGPVADTGELVLDAADELD |
Ga0307470_111458142 | 3300032174 | Hardwood Forest Soil | VSLRVVIVTRIPPVLAGFDGVVREAGHEVVGFLTMRNSDGRYGPHSLTDEL |
Ga0307471_1019826801 | 3300032180 | Hardwood Forest Soil | VTPWRAVIATRILPVALGFYAALREAGHEPVALLTIRDTDG |
Ga0306920_1035959391 | 3300032261 | Soil | MSWRVVVATRIAPVLAGFDAVVRAAGHEPVALLSMR |
Ga0335082_114235332 | 3300032782 | Soil | MSLRVVIVTRIPQVLAAFDAVVRATGHEPVAFLTMRNVDG |
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