Metagenome / Metatranscriptome Family F081092

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081092
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	54 residues
Representative Sequence	LSGYDDFIERLESALADEEGREDFLEYLQGLTSEGRAEILAEADRREAEAEVA
Number of Associated Samples	78
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.35 %
% of genes near scaffold ends (potentially truncated)	13.16 %
% of genes from short scaffolds (< 2000 bps)	74.56 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.088 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (27.193 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.474 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.79% β-sheet: 0.00% Coil/Unstructured: 43.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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SCOP family	SCOP domain	Representative PDB	TM-score
c.1.12.3: Phosphoenolpyruvate carboxylase	d1jqna_	1jqn	0.76433
f.54.1.2: Amino acid antiporter-like	d5j4ia_	5j4i	0.69893
c.87.1.8: Glycosyl transferases group 1	d2bfwa1	2bfw	0.68758
a.21.1.0: automated matches	d6l34a_	6l34	0.68113
c.1.9.9: SAH/MTA deaminase-like	d1p1ma2	1p1m	0.64413

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF13451	zf-trcl	7.89
PF00076	RRM_1	5.26
PF13545	HTH_Crp_2	3.51
PF00487	FA_desaturase	2.63
PF01192	RNA_pol_Rpb6	1.75
PF13443	HTH_26	1.75
PF12708	Pectate_lyase_3	0.88
PF14714	KH_dom-like	0.88
PF08241	Methyltransf_11	0.88
PF13709	DUF4159	0.88
PF13424	TPR_12	0.88
PF02310	B12-binding	0.88
PF07676	PD40	0.88
PF06745	ATPase	0.88
PF02225	PA	0.88
PF00271	Helicase_C	0.88
PF14870	PSII_BNR	0.88
PF00027	cNMP_binding	0.88
PF00805	Pentapeptide	0.88
PF13350	Y_phosphatase3	0.88
PF13426	PAS_9	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	2.63
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	2.63
COG1758	DNA-directed RNA polymerase, subunit K/omega	Transcription [K]	1.75
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.47 %
Unclassified	root	N/A	10.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.09 %
Unclassified	root	N/A	10.53 %
Viruses	superkingdom	All Organisms → Viruses	4.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.09 %
Unclassified	root	N/A	10.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.39 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	60.53 %
Unclassified	root	N/A	10.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.39 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	28.07 %
Unclassified	root	N/A	10.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.39 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.81 %
Unclassified	root	N/A	10.53 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	5.26 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.39 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.81 %
Unclassified	root	N/A	10.53 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	5.26 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.39 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.81 %
Unclassified	root	N/A	10.53 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	5.26 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.39 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.81 %
Unclassified	root	N/A	10.53 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	5.26 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.39 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002557\|JGI25381J37097_1052888	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300002896\|JGI24802J43972_1000116	All Organisms → cellular organisms → Bacteria	3561	Open in IMG/M
3300002896\|JGI24802J43972_1001009	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1716	Open in IMG/M
3300003324\|soilH2_10290209	All Organisms → Viruses → Predicted Viral	1547	Open in IMG/M
3300004016\|Ga0058689_10002648	All Organisms → cellular organisms → Bacteria	3149	Open in IMG/M
3300005171\|Ga0066677_10530929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300005184\|Ga0066671_10223933	All Organisms → cellular organisms → Bacteria → Acidobacteria	1144	Open in IMG/M
3300005184\|Ga0066671_10245718	All Organisms → cellular organisms → Bacteria → Acidobacteria	1099	Open in IMG/M
3300005532\|Ga0070739_10442260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300005564\|Ga0070664_101019610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300005566\|Ga0066693_10459168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300006800\|Ga0066660_11077064	All Organisms → cellular organisms → Bacteria → Acidobacteria	639	Open in IMG/M
3300006918\|Ga0079216_11325404	Not Available	590	Open in IMG/M
3300007790\|Ga0105679_10028827	All Organisms → cellular organisms → Bacteria	6564	Open in IMG/M
3300007790\|Ga0105679_10193088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	1405	Open in IMG/M
3300009147\|Ga0114129_12342645	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300009162\|Ga0075423_12660417	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300009840\|Ga0126313_10488027	All Organisms → cellular organisms → Bacteria → Acidobacteria	985	Open in IMG/M
3300009840\|Ga0126313_11645963	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300010037\|Ga0126304_10042243	All Organisms → cellular organisms → Bacteria	2738	Open in IMG/M
3300010037\|Ga0126304_10108741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	1761	Open in IMG/M
3300010039\|Ga0126309_10141198	All Organisms → cellular organisms → Bacteria → Acidobacteria	1285	Open in IMG/M
3300010039\|Ga0126309_10365582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300010039\|Ga0126309_10442661	All Organisms → cellular organisms → Bacteria → Acidobacteria	787	Open in IMG/M
3300010039\|Ga0126309_11018455	Not Available	557	Open in IMG/M
3300010039\|Ga0126309_11047461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300010040\|Ga0126308_10483727	Not Available	835	Open in IMG/M
3300010041\|Ga0126312_10524106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	849	Open in IMG/M
3300010041\|Ga0126312_10690138	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300010044\|Ga0126310_11063867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300010045\|Ga0126311_10001396	All Organisms → cellular organisms → Bacteria	11725	Open in IMG/M
3300010045\|Ga0126311_10327743	Not Available	1161	Open in IMG/M
3300010166\|Ga0126306_10395896	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300010166\|Ga0126306_10641935	All Organisms → cellular organisms → Bacteria → Acidobacteria	848	Open in IMG/M
3300010166\|Ga0126306_11125677	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300010166\|Ga0126306_11871724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300010397\|Ga0134124_10610114	All Organisms → cellular organisms → Bacteria → Acidobacteria	1070	Open in IMG/M
3300012093\|Ga0136632_10038058	All Organisms → cellular organisms → Bacteria	2198	Open in IMG/M
3300012212\|Ga0150985_111781751	All Organisms → cellular organisms → Bacteria → Acidobacteria	1495	Open in IMG/M
3300012469\|Ga0150984_109172893	All Organisms → cellular organisms → Bacteria → Acidobacteria	1541	Open in IMG/M
3300014487\|Ga0182000_10010821	All Organisms → Viruses → Predicted Viral	2221	Open in IMG/M
3300014487\|Ga0182000_10021868	All Organisms → cellular organisms → Bacteria → Acidobacteria	1700	Open in IMG/M
3300014487\|Ga0182000_10159638	All Organisms → cellular organisms → Bacteria → Acidobacteria	825	Open in IMG/M
3300014488\|Ga0182001_10000327	All Organisms → cellular organisms → Bacteria	9985	Open in IMG/M
3300014488\|Ga0182001_10507916	Not Available	556	Open in IMG/M
3300018432\|Ga0190275_10001969	All Organisms → cellular organisms → Bacteria	14960	Open in IMG/M
3300018465\|Ga0190269_10176225	All Organisms → cellular organisms → Bacteria → Acidobacteria	1134	Open in IMG/M
3300018465\|Ga0190269_10223125	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300018465\|Ga0190269_10447693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	818	Open in IMG/M
3300018465\|Ga0190269_10448961	Not Available	817	Open in IMG/M
3300018465\|Ga0190269_11920073	Not Available	511	Open in IMG/M
3300018466\|Ga0190268_10111795	All Organisms → Viruses → Predicted Viral	1300	Open in IMG/M
3300018466\|Ga0190268_10167162	All Organisms → cellular organisms → Bacteria → Acidobacteria	1150	Open in IMG/M
3300018468\|Ga0066662_12431920	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300018482\|Ga0066669_12385032	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300018915\|Ga0193591_1213157	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300018918\|Ga0193616_1053052	All Organisms → cellular organisms → Bacteria → Acidobacteria	1167	Open in IMG/M
3300018920\|Ga0190273_11099959	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300018946\|Ga0193599_1000868	All Organisms → cellular organisms → Bacteria	12461	Open in IMG/M
3300019767\|Ga0190267_10258986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	868	Open in IMG/M
3300019767\|Ga0190267_10794213	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300020146\|Ga0196977_1000859	All Organisms → cellular organisms → Bacteria	13511	Open in IMG/M
3300020215\|Ga0196963_10435655	Not Available	590	Open in IMG/M
3300020215\|Ga0196963_10607415	Not Available	500	Open in IMG/M
3300021184\|Ga0196959_10048806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	874	Open in IMG/M
3300021265\|Ga0213906_100965	All Organisms → cellular organisms → Bacteria → Acidobacteria	1292	Open in IMG/M
3300021384\|Ga0213876_10000054	All Organisms → cellular organisms → Bacteria	136221	Open in IMG/M
3300025931\|Ga0207644_11106176	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300026295\|Ga0209234_1017380	All Organisms → cellular organisms → Bacteria → Acidobacteria	2723	Open in IMG/M
3300026295\|Ga0209234_1184318	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300027750\|Ga0209461_10000974	All Organisms → cellular organisms → Bacteria	5965	Open in IMG/M
3300027750\|Ga0209461_10106007	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300027766\|Ga0209796_10135151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300027773\|Ga0209810_1304135	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300030510\|Ga0268243_1007502	All Organisms → Viruses → Predicted Viral	1956	Open in IMG/M
3300030510\|Ga0268243_1063177	All Organisms → cellular organisms → Bacteria → Acidobacteria	819	Open in IMG/M
3300030511\|Ga0268241_10111759	Not Available	642	Open in IMG/M
3300030511\|Ga0268241_10152466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300030513\|Ga0268242_1000164	All Organisms → cellular organisms → Bacteria	11722	Open in IMG/M
3300030994\|Ga0308153_106539	Not Available	668	Open in IMG/M
3300031852\|Ga0307410_11452849	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300031911\|Ga0307412_11815206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300034002\|Ga0334920_001485	All Organisms → cellular organisms → Bacteria	7794	Open in IMG/M
3300034005\|Ga0334930_099835	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300034006\|Ga0334934_004643	All Organisms → cellular organisms → Bacteria → Acidobacteria	1880	Open in IMG/M
3300034006\|Ga0334934_015270	All Organisms → Viruses → Predicted Viral	1032	Open in IMG/M
3300034007\|Ga0334936_012833	All Organisms → cellular organisms → Bacteria	1844	Open in IMG/M
3300034008\|Ga0334942_009117	All Organisms → cellular organisms → Bacteria → Acidobacteria	2568	Open in IMG/M
3300034009\|Ga0334944_024063	All Organisms → cellular organisms → Bacteria → Acidobacteria	1159	Open in IMG/M
3300034009\|Ga0334944_079999	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300034024\|Ga0334927_005428	All Organisms → cellular organisms → Bacteria → Acidobacteria	4358	Open in IMG/M
3300034025\|Ga0334940_001278	All Organisms → cellular organisms → Bacteria → Acidobacteria	7278	Open in IMG/M
3300034026\|Ga0334946_000175	All Organisms → cellular organisms → Bacteria	28827	Open in IMG/M
3300034026\|Ga0334946_000445	All Organisms → cellular organisms → Bacteria	8645	Open in IMG/M
3300034026\|Ga0334946_002975	All Organisms → cellular organisms → Bacteria → Acidobacteria	2593	Open in IMG/M
3300034026\|Ga0334946_026618	All Organisms → cellular organisms → Bacteria → Acidobacteria	955	Open in IMG/M
3300034026\|Ga0334946_057320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300034030\|Ga0334952_000323	All Organisms → cellular organisms → Bacteria	27509	Open in IMG/M
3300034133\|Ga0334916_009173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	1091	Open in IMG/M
3300034135\|Ga0334929_000157	All Organisms → cellular organisms → Bacteria	31141	Open in IMG/M
3300034135\|Ga0334929_067962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300034137\|Ga0334943_060095	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300034143\|Ga0334961_012519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	1407	Open in IMG/M
3300034145\|Ga0334963_000317	All Organisms → cellular organisms → Bacteria	20352	Open in IMG/M
3300034172\|Ga0334913_021273	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300034173\|Ga0334925_009107	All Organisms → cellular organisms → Bacteria	2254	Open in IMG/M
3300034221\|Ga0334937_039602	All Organisms → cellular organisms → Bacteria → Acidobacteria	1275	Open in IMG/M
3300034221\|Ga0334937_149543	Not Available	647	Open in IMG/M
3300034236\|Ga0334938_128076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300034268\|Ga0372943_0314441	All Organisms → cellular organisms → Bacteria → Acidobacteria	997	Open in IMG/M
3300034376\|Ga0334923_005079	All Organisms → cellular organisms → Bacteria	2498	Open in IMG/M
3300034377\|Ga0334931_000059	All Organisms → cellular organisms → Bacteria → Acidobacteria	84132	Open in IMG/M
3300034391\|Ga0334917_036509	All Organisms → cellular organisms → Bacteria → Acidobacteria	859	Open in IMG/M
3300034779\|Ga0334945_000938	All Organisms → cellular organisms → Bacteria → Acidobacteria	12306	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.60%
Host-Associated	Host-Associated	11.40%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.72%
Plants	Host-Associated → Plants	11.40%
Aquatic	Environmental → Aquatic	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.14%
Phyllosphere	Host-Associated → Plants → Phyllosphere	2.63%
Freshwater	Environmental → Aquatic → Freshwater	0.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.88%
Roots	Host-Associated → Plants → Roots	0.88%
Phylloplane	Host-Associated → Plants → Phylloplane	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.16%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	15.79%
Sand	Environmental → Terrestrial → Soil → Sand	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.51%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.63%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	2.63%
Ice	Environmental → Aquatic → Freshwater → Ice	0.88%
Loam	Environmental → Terrestrial → Soil → Loam	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.23%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	15.79%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	11.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.89%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.63%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	2.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.40%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	11.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.53%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	8.77%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	7.02%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	5.26%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.63%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	2.63%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.75%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.88%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.88%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002896	Soil microbial communities from Manhattan, Kansas, USA - Sample 300um Nextera	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018915	Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300018918	Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300018946	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020146	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C	Environmental	Open in IMG/M
3300020215	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5	Environmental	Open in IMG/M
3300021184	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20	Environmental	Open in IMG/M
3300021265	Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Shaw_3	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027766	Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300030513	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)	Environmental	Open in IMG/M
3300030994	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_142 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300034002	Biocrust microbial communities from Mojave Desert, California, United States - 16HMC	Environmental	Open in IMG/M
3300034005	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 26HNS	Environmental	Open in IMG/M
3300034006	Biocrust microbial communities from Mojave Desert, California, United States - 30SMC	Environmental	Open in IMG/M
3300034007	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC	Environmental	Open in IMG/M
3300034008	Biocrust microbial communities from Mojave Desert, California, United States - 38SMC	Environmental	Open in IMG/M
3300034009	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 40SMS	Environmental	Open in IMG/M
3300034024	Biocrust microbial communities from Mojave Desert, California, United States - 23HNC	Environmental	Open in IMG/M
3300034025	Biocrust microbial communities from Mojave Desert, California, United States - 36SMC	Environmental	Open in IMG/M
3300034026	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS	Environmental	Open in IMG/M
3300034030	Biocrust microbial communities from Mojave Desert, California, United States - 48SNC	Environmental	Open in IMG/M
3300034133	Biocrust microbial communities from Mojave Desert, California, United States - 12HMC	Environmental	Open in IMG/M
3300034135	Biocrust microbial communities from Mojave Desert, California, United States - 25HNC	Environmental	Open in IMG/M
3300034137	Biocrust microbial communities from Mojave Desert, California, United States - 39SMC	Environmental	Open in IMG/M
3300034143	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 57SNS	Environmental	Open in IMG/M
3300034145	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034173	Biocrust microbial communities from Mojave Desert, California, United States - 21HNC	Environmental	Open in IMG/M
3300034221	Biocrust microbial communities from Mojave Desert, California, United States - 33SMC	Environmental	Open in IMG/M
3300034236	Biocrust microbial communities from Mojave Desert, California, United States - 34SMC	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034376	Biocrust microbial communities from Mojave Desert, California, United States - 19HNC	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M
3300034391	Biocrust microbial communities from Mojave Desert, California, United States - 13HMC	Environmental	Open in IMG/M
3300034779	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 41SMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25381J37097_10528881	3300002557	Grasslands Soil	LTGYDDFIERLEAALDGEEGREDFLVYLQELTRDQRAELVAEADRREPEAEGD*
JGI24802J43972_10001165	3300002896	Soil	VSGYEDFIERLEAALEDEEAREDFLEYLQGLTGEGRTEILAEADRREMAEIV*
JGI24802J43972_10010094	3300002896	Soil	VNGYDDFIERLESALGDEEALEDFLDYLRGLTGEGRAEILAEADRREAEADVT*
soilH2_102902093	3300003324	Sugarcane Root And Bulk Soil	VSGYDDLIERLEAALSDDEGREDFLEYLQGLTGEERARILAEADRREAETWSLEKGDKR*
Ga0058689_100026485	3300004016	Agave	LSGYDDFIERLESALADEEGREDFLEYLQGLTSEGRAEILAEADRREAEAEVA*
Ga0066677_105309292	3300005171	Soil	LTGYDDFIERLEAALGGEEGREDFLVYLQELTRDQRAELVAEADRREPEAEGD*
Ga0066671_102239333	3300005184	Soil	LNEYDDFLERLEVALEHEEGREDFLTYLQGLTKERRAELLAEADRREADAEGD*
Ga0066671_102457184	3300005184	Soil	LTGYDDFIERLEAALYGGEGREDFLAYLQELTRDQRAELVAEADRREPEAEGD
Ga0070739_104422603	3300005532	Surface Soil	VTVYDDFIDRLEAALEHDEEREDFLDYLQGLTREQRAELLAEVDRREMEAESN*
Ga0070664_1010196102	3300005564	Corn Rhizosphere	VSGYDDFIERLEAALVDEEAREDFLEYMEGLTSEGRAEILAEADRREAESEVA*
Ga0066693_104591681	3300005566	Soil	VNVYDDFRERLESALGDDEGREDFLDYLQGLTKEQRAELLAEADRREPEAEDA*
Ga0066660_110770643	3300006800	Soil	LTGYDDFIERLEAALDGEEGREDFLVYLQELTRDQRAELVAEADRR
Ga0079216_113254043	3300006918	Agricultural Soil	VSGYEDFIERLESALADEEGREEFLDYLQGLTGEGRAEILAEADRREAETDVT*
Ga0105679_100288275	3300007790	Soil	VNGYEDFIERLEAALSDEEGREEFIEYLQGLSKEGRAEIVAEADRLEAKSTEKGEEV*
Ga0105679_101930883	3300007790	Soil	MGDEPGRLGMYDDFIERLAAALEHEEGREDFLEYLQGLTQEGRAEILAEADRREDEAEVT
Ga0114129_123426452	3300009147	Populus Rhizosphere	MSDYDDFIERLEAALAGEEAREDFLEYLQGLTSEGRAEILAEADRREAEATVD*
Ga0075423_126604172	3300009162	Populus Rhizosphere	LNVYDDFIERLEAALEHDEGRENFLEYLQGMTGEQRAELLAEADRRGPEAEDDQERR*
Ga0126313_104880271	3300009840	Serpentine Soil	VNGYDDFLERLESALTNDEGREEFLEYLQGLTKEGRAEIIAEADRLEAKSVEKGEEV*
Ga0126313_116459633	3300009840	Serpentine Soil	LNGYDDFIERLEAALADDEAREDFLEYLQGLTGEGRAEILAEADRREPEEEESH*
Ga0126304_100422432	3300010037	Serpentine Soil	LNGYDDFIERLEAALQDEEGREDFLVYLQGLTSEGRAEILAESDRREPEADG*
Ga0126304_101087414	3300010037	Serpentine Soil	VSGYEDFVERLEAALTDDEGREDFLEYLEGLTREGRAEILAEADRREAEAEVA*
Ga0126309_101411982	3300010039	Serpentine Soil	VNGYEDFIERLEAALADDEAREDFLEYLQGLTVEGRAEILAEADRREAEAEIVRER*
Ga0126309_103655823	3300010039	Serpentine Soil	VNGYDDFIERLESALAGDEAREDFLDYLEGLTSEGRAEILAEADRLEAEAKVD*
Ga0126309_104426614	3300010039	Serpentine Soil	VSSGYDDFIERLEAALADADGREDFLQYLEGLTREGRAEILAEADRLEDEAE
Ga0126309_110184552	3300010039	Serpentine Soil	LNGYDDFIERLESALADDEAREDFLEYLQGLTSEGRAEILAEADRREEEAEFT*
Ga0126309_110474613	3300010039	Serpentine Soil	LNGYDDFIERLEAALTDDEAREDFLEYLQGLTGEGRAEILAEADRREDEAELT*
Ga0126308_104837273	3300010040	Serpentine Soil	VSGYEDFIERLEAALADDESREDFLEYLQGLTVEGRAEILAEADRREEAEII*
Ga0126312_105241061	3300010041	Serpentine Soil	RERRRRVNGYDDFIERLEAALTDDEGREDFLEYLEGLTREGRAEILAEADRREAEAEVA*
Ga0126312_106901381	3300010041	Serpentine Soil	VNGYDDFIERLEAALADAEGREEFLEYLEGLTREGRAEILAEADRRAAEVEVA*
Ga0126310_110638672	3300010044	Serpentine Soil	VNDGYDDFIERLEAALKDDEGREDFLEYLEGLTSEGRAEILAEADRLEAEAKVD*
Ga0126311_100013969	3300010045	Serpentine Soil	VNGYDDFIERLEAALTDDEGREDFLEYLEGLTSEGRAEILAEADRLEAEAKVD*
Ga0126311_103277433	3300010045	Serpentine Soil	VSGYEDFIERLEAALADEEGREDFLEYLEGLTSEGRAEILAEADRREAEADVA*
Ga0126306_103958964	3300010166	Serpentine Soil	VNGYDDFIERLESALTNDEGREDFLEYLQGLTKEGRAEILAEADRLEAKSVEKGEEI*
Ga0126306_106419353	3300010166	Serpentine Soil	VSSGYDDFIERLEAALADAEGREDFLEYLEGLTREGRAEILAEADRREDEAEVA*
Ga0126306_111256772	3300010166	Serpentine Soil	VNGYDDFIERLEAALASDEAREDFLDYLAGLTSEGRADILAEADRRDAETEVA*
Ga0126306_118717242	3300010166	Serpentine Soil	VSGYDDFIERLEAALADAEGREDFLEYLEGLTREGRAEILAEADRREEEAEVA*
Ga0134124_106101144	3300010397	Terrestrial Soil	VNGYDDFIERLESALMDEEAREEFLVYLQGLTSEGRAEILAEADLREPEAESN*
Ga0136632_100380583	3300012093	Polar Desert Sand	MNGYDDFIERLEAALEHEECREDFLDYLQGLTKEQRAELFAEADRRETEVEGD*
Ga0150985_1117817513	3300012212	Avena Fatua Rhizosphere	VSGYDDFIERLEAALADEEAREDFLEYLEGLTSEGRAEILAEADRREAESEVA*
Ga0150984_1091728934	3300012469	Avena Fatua Rhizosphere	VSGYDDFIERLEAALADEEAREDFLEYLEGLTSEGRAEILAEADRREAEAEVA*
Ga0182000_100108213	3300014487	Soil	VSGYEDFIERLEAALADDEAREDFLDYLEGLTKEGRAEILDEADRREADTEAA*
Ga0182000_100218683	3300014487	Soil	LNVYDDFRERLEIALEHDEGREDFLDYLQGMTREQRAELLAEADRREVEVEAEGD*
Ga0182000_101596383	3300014487	Soil	VNVYDDFIERLETALEHEEGREDFLDYLQGLTSEQRAELLAEADRREPEADDD*
Ga0182001_100003275	3300014488	Soil	VSGYEDFIERLEAALADDEGREDFLEYLQGLTREGRAEIVAEADRLEAEAKVD*
Ga0182001_105079162	3300014488	Soil	VSGYEDFIERLESALADDEGREDFLEYLQGLTQEGRAEILAEADRREAEAEFT*
Ga0190275_1000196914	3300018432	Soil	MTGYDDFIERLEGALEHEDGREDFLNYLQALTREQRAELVAEADRREPEVESN
Ga0190269_101762253	3300018465	Soil	VSGYEDFIDRLEAALADDAGREDFLEYLQGLTTEGRAEILAEADRLETEKLCD
Ga0190269_102231254	3300018465	Soil	VNDYDDFIERLDAALADDDAREDFLEYLQGLTGEGRAEILAEADRLEAAEEVA
Ga0190269_104476933	3300018465	Soil	LNGYDDFIERLEAALEDEDGREDFLVYLEGLTSEGRAEILAESDRREPEAEG
Ga0190269_104489613	3300018465	Soil	VNGYDDFIERLEAALADEEAREDFLEYMQGLTGEGRKEILAEADRRESEAEAT
Ga0190269_119200732	3300018465	Soil	VSGYEDFIERLESALADEEGREDFLDYLQGLTGEGRAAILAEADRREEAEADPA
Ga0190268_101117953	3300018466	Soil	VSGYDDFLERLEAALADDEAREDFLEYLQGLTGEGRAEILAEADRREAAEEVA
Ga0190268_101671625	3300018466	Soil	VSGYDDFIERLESALADDEAREEFLDYLQGLTGEGRAEILAEADRLEAEADV
Ga0066662_124319202	3300018468	Grasslands Soil	VNVYDDFRERLESALGDDEGREDFLEYLQGLTREQRAELLAEADRREPEAEEV
Ga0066669_123850321	3300018482	Grasslands Soil	NVYDDFRERLESALGDDEGREDFLDYLQGLTKEQRAELLAEADRREPEAEDA
Ga0193591_12131572	3300018915	Soil	VSGYDDFIERLESALSDDEGREDFLEYLQGLTSEGRAEILAEADRREDEAEVT
Ga0193616_10530524	3300018918	Soil	VSGYEDFIERLEAALADDEEREDFLVYLEGLTKEGRAEILAEADRLETKALTD
Ga0190273_110999591	3300018920	Soil	RARNHAPRERRWRVNGYDDFIERLESALSDDEGREDFLEYLQGLTKEGRAEILAEADRLEAKSVEKGEEV
Ga0193599_10008681	3300018946	Soil	MNGYDDFIERLETALANEQGREDFLEYLQGLTKECRAEILAEADQREAETEVA
Ga0190267_102589863	3300019767	Soil	VNGYDDFIERLESALADEEGREDFLEYLQGLTSEGRAEILAEADRREDEAEVA
Ga0190267_107942131	3300019767	Soil	MSGYDDFIERLEAALEPGEGREDFIDYLQGMSRTERAELLAEAARRDPEGAGRKEAGPRA
Ga0196977_100085915	3300020146	Soil	VNAYDDFVERLAAALEGEEGREDFLDYLQNLTRDERAELLAEADGREIEEVN
Ga0196963_104356553	3300020215	Soil	VSGYDDFLERLEAALADEEAREDFLEYLQELTSEGRAEILAEADRREAAAEVA
Ga0196963_106074151	3300020215	Soil	MAYETGVSGYDDFIERLESALADEESREDFLEYLQGLTGEGRAEILAEADRREAEADVA
Ga0196959_100488061	3300021184	Soil	LSSALADDEGREDFLEYLQGLTSEGRAEILAEADRLETEELCD
Ga0213906_1009653	3300021265	Soil	LSDYDDFIERLEAALADDEAREDFLDYLQGLTSEGRAEILAEADRREAETEAA
Ga0213876_1000005460	3300021384	Plant Roots	VNGYDDFIERLEDALADDEGREAFLEYLQGLTKEGRAEILAEADRREAETEAESA
Ga0207644_111061762	3300025931	Switchgrass Rhizosphere	VSGYDDFIERLEAALVDEEAREDFLEYMEGLTSEGRAEILAEADRREAESEVA
Ga0209234_10173804	3300026295	Grasslands Soil	LTGYDDFIERLEAALDGEEGREDFLVYLQELTRDQRAELVAEADRREPEAEGD
Ga0209234_11843181	3300026295	Grasslands Soil	LNEYDDFLERLEVALEHEEGREDFLTYLQGLTKERRAELLAEADRREADAEGD
Ga0209461_100009749	3300027750	Agave	LSGYDDFIERLESALADEEGREDFLEYLQGLTSEGRAEILAEADRREAEAEVA
Ga0209461_101060071	3300027750	Agave	VSGYDDFIERLEAALADDEGREDFLEYLQALTKEGRAEILAEADRREGETETEAA
Ga0209796_101351511	3300027766	Agave	LSVYDDFIERLEAALEHDEGRENFLDYLQGLTSEQRAELLAEADRREPEAEDD
Ga0209810_13041353	3300027773	Surface Soil	VTVYDDFIDRLEAALEHDEEREDFLDYLQGLTREQRAELLAEVDRREMEAESN
Ga0268243_10075022	3300030510	Soil	VSGYEDFIERLEAALADDEAREDFLDYLEGLTKEGRAEILDEADRREADTEAA
Ga0268243_10631773	3300030510	Soil	LNVYDDFRERLEIALEHDEGREDFLDYLQGMTREQRAELLAEADRREVEVEAEGD
Ga0268241_101117592	3300030511	Soil	VSGYDDFLERLEAALADEEAREEFLEYLQGLTSEERAEILAGADRLEVAAEIA
Ga0268241_101524662	3300030511	Soil	LSGYDDFIERLEAALADDEARADFLDYLQGLTSEARAEILAEADRREAETEAA
Ga0268242_10001646	3300030513	Soil	VSGYEDFIERLEAALADDEGREDFLEYLQGLTREGRAEIVAEADRLEAEAKVD
Ga0308153_1065393	3300030994	Soil	VNGYDDFIERLESALSDEEAREDFLEYLQGLTSEGRAEILAEADRREAEAEFT
Ga0307410_114528492	3300031852	Rhizosphere	VNGYDDFIERLEAALADPEGREDFLEYLEGLTREGRAEILAEADRREAEVEVA
Ga0307412_118152062	3300031911	Rhizosphere	VNGYDDFIERLEAALADAEGREDFLEYLEGLTREGRAEILAEADRREAETEVT
Ga0334920_001485_3935_4096	3300034002	Hypolithic Biocrust	VSGYDDFIERLEGALADDEGREDFLEYLEGLTSEGRAEILAEADRREEKTELT
Ga0334930_099835_58_219	3300034005	Sub-Biocrust Soil	VNGYDDFIERLEAALVDDEGREDFLEYLQGLTSEGRAEILAEADRLETEEQRT
Ga0334934_004643_798_959	3300034006	Biocrust	VSGYDDFIERLQGALDDDEGREDFLDYLQGLTSEGRAEILAEADRLEAEAEIA
Ga0334934_015270_141_305	3300034006	Biocrust	LSGYDDFVERLESALADEESREDFLAYLQGLTGEGRAEILAGADRLEEEEADIA
Ga0334936_012833_1166_1333	3300034007	Biocrust	VSGYDDFIERLEAALAGGEAREDFLDYLGGLTSEGRADILAGADRREAEEEAEVA
Ga0334942_009117_1188_1349	3300034008	Biocrust	VSGYDDFVERLEAALAGDEAREDFLEYLEGLSREERADILAEADRLEEKTEAA
Ga0334944_024063_963_1124	3300034009	Sub-Biocrust Soil	VTGYDDFIERLEAALADEEGREDFLDYLQGLTGEGRAEILAGADRLEAEAEVA
Ga0334944_079999_467_616	3300034009	Sub-Biocrust Soil	LSGYDDFVERLESALADEESREDFLAYLQGLTGEGRAEILAGADRLEEEE
Ga0334927_005428_743_904	3300034024	Hypolithic Biocrust	VSGYEDFIERLEAALADAEGREDFLEYMEGLTSEGRAEILAEADRREAEAVVA
Ga0334940_001278_3760_3921	3300034025	Biocrust	VNGYDDFVERLESALVDDVAREDFLEYLEGLTSEGRAEILAGADRLESEAEVA
Ga0334946_000175_12432_12599	3300034026	Sub-Biocrust Soil	VSGYDDFIERLEAALGGEEAREDFLDYLGGLTSEGRADILAGADRREAEEEAEVA
Ga0334946_000445_6029_6190	3300034026	Sub-Biocrust Soil	LNGYDDFIERLEAALAGDEGREDFLVYLEGLTGEGRAEILAGADRLEAETEVA
Ga0334946_002975_458_655	3300034026	Sub-Biocrust Soil	VNGYDDFIERLESALADEESREDFLEYLQELTGEGRAEILAEADRREADANVAQGRDGRVASDGK
Ga0334946_026618_770_955	3300034026	Sub-Biocrust Soil	RTVEAERRVNGYDDFIERLESALADEEAREEFLDYLRGLSREKRAEILAEADRREPEAEI
Ga0334946_057320_442_597	3300034026	Sub-Biocrust Soil	VYDDFVERLAAALEDEAGREDFLDYLQSLTAEERAELLAGADGRETEVAVN
Ga0334952_000323_15745_15906	3300034030	Biocrust	VSGYEDFIERLESALADEEGREDFLDYLQGLTSEGRAEILAEADRREAETDVT
Ga0334916_009173_770_931	3300034133	Hypolithic Biocrust	VSGYDEFIERLETALANEQGREDFLEYLQGLTKEGRAEILAEAEQEAAETEVA
Ga0334929_000157_29802_29963	3300034135	Hypolithic Biocrust	LNCYEDFIERLESALSDEEAREDFLEYLQGLTCEGRTEILAEADRREAEADVA
Ga0334929_067962_283_444	3300034135	Hypolithic Biocrust	VSGYEDFVERLEAALAGDEAREDFLDYLEGLTREGRADILAEADRREAEAETA
Ga0334943_060095_507_704	3300034137	Biocrust	LNGYDDFIERLEAALAGDEGREDFLVYLEGLTGEGRAEILAEADRREADANVAQGRDGRVASDGK
Ga0334961_012519_289_450	3300034143	Sub-Biocrust Soil	LSGYDDFIERLESALADEEGREDFLEYLQGLTQEGRAEILVEADRREAEAEVA
Ga0334963_000317_9914_10075	3300034145	Sub-Biocrust Soil	LSGYDDFIERLEAALADDEGREDFLNYMEGLTSEGRAEILAEADRREGEAEVT
Ga0334913_021273_1067_1228	3300034172	Sub-Biocrust Soil	MSGYDDFIERLESALADDDARENFLEYLEGLTKEGRAEILAEADRLDAETQVS
Ga0334925_009107_737_898	3300034173	Hypolithic Biocrust	VNGYDDFIERLESALADDEAREDFLEYLQGLTSEGRAEILAEADRREEEAEFT
Ga0334937_039602_21_206	3300034221	Biocrust	LNGYEDFIERLEAALADDEGREEFLEYLQDLTSEGRAEILAEADRLEARGAERSRKAEHE
Ga0334937_149543_489_647	3300034221	Biocrust	VNGYDDFIERLESALADEEAREEFLDYLRGLSREKRAEILAEADRREPEAEIV
Ga0334938_128076_319_507	3300034236	Biocrust	HAPGERRGRVNGYDDFIERLEAALVDDEGREDFLEYLQGLTSEGRAEILAEADRLETEEQRT
Ga0372943_0314441_646_813	3300034268	Soil	VNSYDDFIERLEAALAGEEAREDFLEYLQELTSEGRAEILAEADRREGEAEAEVA
Ga0334923_005079_2369_2497	3300034376	Hypolithic Biocrust	LEAALQDEEGREHFLVYLQEMTTEGRAEILAESDRREPEAEG
Ga0334931_000059_54054_54215	3300034377	Sub-Biocrust Soil	VSGYDDFVERLQAALADDGGREDFLDYLQGLTREGRAEILAEADRLEAEAQVA
Ga0334917_036509_312_473	3300034391	Hypolithic Biocrust	LSGYDDFIERLEAALADDEGREDFLSYMEGLTSEGRAEILAEADRRESETEVT
Ga0334945_000938_497_658	3300034779	Sub-Biocrust Soil	LSGYEDFIERLEAALADDEGREDFLEYLQGLTSEGRAEILAEADRLEADGPCG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081092

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences