Basic Information | |
---|---|
Family ID | F081032 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 114 |
Average Sequence Length | 51 residues |
Representative Sequence | MRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAFSKLGKIATTLTKLFK |
Number of Associated Samples | 57 |
Number of Associated Scaffolds | 114 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 36.84 % |
% of genes near scaffold ends (potentially truncated) | 20.18 % |
% of genes from short scaffolds (< 2000 bps) | 64.91 % |
Associated GOLD sequencing projects | 45 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (54.386 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (25.439 % of family members) |
Environment Ontology (ENVO) | Unclassified (54.386 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (46.491 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 61.54% β-sheet: 0.00% Coil/Unstructured: 38.46% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Sediment Freshwater Sediment Freshwater Freshwater Lake Freshwater Lentic Freshwater Freshwater Freshwater Lake Sediment Sediment Aqueous Estuary Water Estuarine |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
B570J40625_10000198416 | 3300002835 | Freshwater | MRVTHTPFKTKTRAIGSDLEMTIALLGALNNPRQSKLSKLGKIATTLTKLFK* |
JGI25908J49247_100022648 | 3300003277 | Freshwater Lake | MRVTHTPYKTRPRAIGSDLEMTLALVGALKNPNKSAISKLGKIATTLTKLFK* |
JGI25908J49247_100119006 | 3300003277 | Freshwater Lake | VRVTHTPFKTKTRAIGSDLEMTLALVGALKNPNKSAFSKLGKIATTLAKLIK* |
JGI25908J49247_100261772 | 3300003277 | Freshwater Lake | MRVTHTPFKTKTRAIGSDLEMTLALLGALNNPNKSRLSKLGKIATTLTRLLK* |
JGI25908J49247_100293472 | 3300003277 | Freshwater Lake | MRVTHTPFKIRTRAIGSDLEMTLALVGALKNPNKSAFNKLGKIATTLAKLFK* |
JGI25907J50239_10732852 | 3300003394 | Freshwater Lake | VRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAISKLGKIATTITKLFK* |
Ga0069718_162927742 | 3300004481 | Sediment | RAIGSDLEMTLALIGALNNPNKSRLSKLGKIATTITKLFK* |
Ga0049081_1000087414 | 3300005581 | Freshwater Lentic | MRITHTPFKTRTRAIGSDVEMTLAFVGALKNPNKSAFSKLGKIATTLAKLFK* |
Ga0049081_100195933 | 3300005581 | Freshwater Lentic | MRVTHTPYKTKTRAIGSDLEMTLALVGALKNPNKSAISKLGKIATTLTKLFK* |
Ga0049081_100211453 | 3300005581 | Freshwater Lentic | MRVTHTPFRTRTRAIGSDLEMTLALLGALNNPKQSKLSKLGKIATTITRLFK* |
Ga0049081_100907532 | 3300005581 | Freshwater Lentic | MRVTHTPFKTRTRAIGSDLEMTLALVGALKNPNKSAFSKLGKIATTLAKLLK* |
Ga0049081_101242973 | 3300005581 | Freshwater Lentic | VRVTHTPFKTKTRAIGSDLEMTLALVGALKNPNKSAFNKLGKIATIIAKLIK* |
Ga0049081_102794163 | 3300005581 | Freshwater Lentic | MRVTHTPFKTKTRAIGSDLEMTLALVGALKNPNKSA |
Ga0049081_103361091 | 3300005581 | Freshwater Lentic | VRVTHTPFKTKTRAIGSDLEMTLALVGALKNPNKSAFSKLGKIATIITKLLK* |
Ga0049080_100150872 | 3300005582 | Freshwater Lentic | MRVTHTPFRTRTRAIGSDLEMTIALLGALGNPKQSKLSKLGKIATTITRLFK* |
Ga0075465_100848753 | 3300006037 | Aqueous | MRVTHTPFKTRTRAIGSDLEMTIALLGALKNSNKSAFSKIGKIATTLAKLFK* |
Ga0075464_107641002 | 3300006805 | Aqueous | MRVTHTPFKTRTRAVGSDLEMTIALIGALGNPKQSKLSKLGKIATTITRLFK* |
Ga0075473_102447272 | 3300006875 | Aqueous | MRVTHTPFKKKTRVIGSDLGMMLALIGTLKNPTTSKVGKFQKITGILTKLLK* |
Ga0099851_10750591 | 3300007538 | Aqueous | TPFKTRTRAIGSDLEMTIALLGALKNPNKSAFSKIGKIATTLAKLFK* |
Ga0099846_10107982 | 3300007542 | Aqueous | MRVTHTPFKTKTRAIGSDLEMTLALVGALKNPNKSAFSKLGKIATTLAKLFK* |
Ga0099846_10535493 | 3300007542 | Aqueous | MRVTNTPYKVKTRAIGSDLEMTIAIVGALMNPSASKFGKLQKLTQTLTKLLK* |
Ga0099846_12199661 | 3300007542 | Aqueous | VRVTHTPFKTRTRAIGSDLEMTLALVGALKNPNKSAFSKLGKIATTLAKLIK* |
Ga0102853_10246112 | 3300007543 | Estuarine | MRVTHTPYKTKTRAIGSDLEMTLALIGALKNPTTSKLGKFQKIATTLAKLLK* |
Ga0102856_10374742 | 3300007636 | Estuarine | MRVTHTPFKTKTRAIGSDLEMTLALIGALNNPNKSRLSKLGKIATTITKLFK* |
Ga0102856_10612122 | 3300007636 | Estuarine | MRVTHTPFKTRTRAIGSDLEMTLALIGALRNPNKNAFSKLGKIATTITKLFK* |
Ga0102859_11529812 | 3300007708 | Estuarine | MRVTHTPYKKKTRAIGSDLEMTLALIGALRTPTTSKLGKFQKIATTLTKLFK* |
Ga0102859_12424212 | 3300007708 | Estuarine | VRVTHTPFKTRTRAIGSDLEMTIALLGALRNPKQSKLSKLGKIATTLTKLFK* |
Ga0105735_11014192 | 3300007860 | Estuary Water | MRVTHTPFKTRTRAIVSDLEMTLALIGALRNPNKNAFSKLGKIATTITKLFK* |
Ga0105737_12169151 | 3300007862 | Estuary Water | MRVTHTPFKTRTRAIGSDLEMTLALIGALKNPTTSKLGKFQKIATTLAKLLK* |
Ga0105098_101747001 | 3300009081 | Freshwater Sediment | NNSFEHIIKPQKTNKMRVTHTPFKTKTRAIGSDLEMTLALLGALKNQKQSKLSKLGKIATTITKLFK* |
Ga0105098_102121432 | 3300009081 | Freshwater Sediment | MRVTHTPFKTKTRAIGSDLEMTLALLGALKNPKQSKLSKLGKIATTITKLFK* |
Ga0105103_100894744 | 3300009085 | Freshwater Sediment | MRVTHTPFKTKTRAIGSDLEMTIALLGALRNPKQSKLSKLGKIATTLTKLFK* |
Ga0105102_101318563 | 3300009165 | Freshwater Sediment | MRVTHTPFKTKTRAIGSDLEMTIALLGALRNPNKSAISKLGKIATTLTKLFK* |
Ga0105102_102461362 | 3300009165 | Freshwater Sediment | MRITHTPFKTKTRAIGSDIEMTLALLGALRNPKQSAFSKLGKVATTLTKLFK* |
Ga0105104_100815872 | 3300009168 | Freshwater Sediment | MRVTHTPFKTKTRAIGSDLEMTIALLGALRNPKQSKLSNLGKIDTTITKLFK* |
Ga0105104_107404012 | 3300009168 | Freshwater Sediment | VRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAFSQLGKHAPTLTKLLKGK* |
Ga0105097_100110106 | 3300009169 | Freshwater Sediment | MRVTNTPYKVKTRAIGSDLEMTIALVGALMNPNASKFGKLQKITQTLTRLLK* |
Ga0105097_101711891 | 3300009169 | Freshwater Sediment | MRVTHTPFKTKTRAIGSDLEMTLALLGALKNPNKSAFSKLGKIATTITKLFK* |
Ga0105097_102030221 | 3300009169 | Freshwater Sediment | KTRAIGSDIEMTLALLGALRNPKQSAFSKLGKVATTLTKLFK* |
Ga0105097_105511352 | 3300009169 | Freshwater Sediment | MRVTHTPFKTKTRAIGSDLEMTIALLGALKNPKQSKLSKLGKISTTLTKLFK* |
Ga0105097_106390401 | 3300009169 | Freshwater Sediment | MRVTHTPFKTKTRAIGSDLEMTIALLGALKNPKQSKL |
Ga0105097_107505832 | 3300009169 | Freshwater Sediment | VRVTHTPFKTRTRAIGSDLEMTIALLGALRNPKQSKLSKLGKIATTITKLFK* |
Ga0177922_100567677 | 3300013372 | Freshwater | MRVTHTPFKTRTRAIGSDLEMTLALLGALRNPKQSKLSKLGKIATTLTK |
Ga0177922_106412372 | 3300013372 | Freshwater | MRVAHTPFRTRTRAIGSDLEMTIALIGALGNPKQSKLSKLGKIATTLTKLFK* |
Ga0177922_107323687 | 3300013372 | Freshwater | KTRTRAIGSDLEMTLALLGALRNPKQSKLSKLGKIATTLTKLFK* |
Ga0177922_112931801 | 3300013372 | Freshwater | MRVTHTPFRTRTRAIGSDLEMTLALLGALGNPKQGKLSKLGKIATTITRLLK* |
Ga0177922_112934891 | 3300013372 | Freshwater | MRVTHTPFRTRTRAIGSDLEMTIALLGALGNPKQSKLSKLGKIATTITRLLK* |
Ga0177922_112939732 | 3300013372 | Freshwater | VRVTHTPFKTRTRAIGSDLEMTLALLGALRNPKQSKLSKLGKIATTLTK |
Ga0181338_10138731 | 3300015050 | Freshwater Lake | TPYKTRPRAIGSDLEMTLALVGALKNPNKSAISKLGKIATTLTKLFK* |
Ga0181358_12444172 | 3300017774 | Freshwater Lake | KQMRVTHTPFKTRTRAIGSDLEMTIALIGALKNPNKSAFSKIGKIATTLTKLFR |
Ga0181357_11846971 | 3300017777 | Freshwater Lake | MRVTHTPFKTKTRAIGSDLEMTLALVGALKNQNKSAFSKLGKIATTLAKLLK |
Ga0181355_10202406 | 3300017785 | Freshwater Lake | MRVTHTPYKTKTRAIGSDLEMTLALVGALKNPNKNAFNKLGKIATTLAKLLK |
Ga0181355_11481181 | 3300017785 | Freshwater Lake | VRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAFSKIGKIATTLTKLFK |
Ga0181355_13714512 | 3300017785 | Freshwater Lake | TRTRAIGSDLEMTLALLGALKNPKQSKLSKLGKIATTLTKLFK |
Ga0181359_100041712 | 3300019784 | Freshwater Lake | MRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAISKIGKIATTLTKLFK |
Ga0181359_10015177 | 3300019784 | Freshwater Lake | VRVTHTPFKTKTRAIGSDLEMTLALVGALRNPNKSAINKLGKIATIIAKLIK |
Ga0181359_10016193 | 3300019784 | Freshwater Lake | MRVTHTPFKTRTRAIGSDLEMTLALVGALKNQNKSAFSKLGKIATTLAKLLK |
Ga0181359_10114322 | 3300019784 | Freshwater Lake | MRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAFSKLGKIATTITKLFK |
Ga0181359_10220584 | 3300019784 | Freshwater Lake | MRVTHTPFKTRTRAIGSDLEMTLALLGALRNPKQSKFGKLQKIATTLTKLFK |
Ga0181359_11189212 | 3300019784 | Freshwater Lake | MRVTHTPFKTRTRAIGSDLEMTIALLGALKNPKQSKLSKLGKIATTLTKLFK |
Ga0181359_11668492 | 3300019784 | Freshwater Lake | VRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAISKLGKIATTITKLFK |
Ga0181359_12062483 | 3300019784 | Freshwater Lake | MRVTHTPFKTRTRAIGSDLEMTLALVGALKNPNKSAFSKLGKIATIIAKLIK |
Ga0207193_100164155 | 3300020048 | Freshwater Lake Sediment | MRVTHTPYKTKTRAIGSDLELTIALIGALRSPTTSKLGKFQKITGILTKLLK |
Ga0207193_12697042 | 3300020048 | Freshwater Lake Sediment | VRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAFSKLGKIATTITKLFK |
Ga0211731_108303672 | 3300020205 | Freshwater | HFRYLHFKQNKMRVTHTPFKTRTRAIGSDLEMTLALVGALKNPNKSAFSKLGKIATIIAKLIK |
Ga0208050_10103101 | 3300020498 | Freshwater | MRVTHTPFKTKTRAIGSDLEMTIALLGALNNPRQSKLSKLGKIATTLTKLFK |
Ga0210298_11528287 | 3300021328 | Estuarine | MRVTHTPFKTRTRAIGSDLEMTLALLGALKNPNKSASSKLGKIATTLTRLFK |
Ga0181354_10192842 | 3300022190 | Freshwater Lake | MRVTHTPFKTRTRAIGSDLEMTLALLGALKNPKQSKLSKLGKIATTLTKLFK |
Ga0181354_10303054 | 3300022190 | Freshwater Lake | MRVTHTPFKTKTRAIGSDLEMTLALVGALKNPNKSAFSKLGKIATTLAKLLK |
Ga0181354_10614923 | 3300022190 | Freshwater Lake | MRVTHTPFRTRTRAIGSDLEITLALIGALGNPKQGKLSKLGKLATTITRLFK |
Ga0181354_12483361 | 3300022190 | Freshwater Lake | MRVTHTPFKTRTRAIGSDLEMTLALVGALKNPNKSA |
Ga0196901_10241212 | 3300022200 | Aqueous | MRVTNTPYKVKTRAIGSDLEMTIAIVGALMNPSASKFGKLQKLTQTLTKLLK |
Ga0244777_100478083 | 3300024343 | Estuarine | MRVTHTPYKTKTRAIGSDLEMTLALIGALKNPTTSKLGKFQKIATTLAKLLK |
Ga0244777_102538173 | 3300024343 | Estuarine | MRVTHTPFKTKTRAIGSDLEMTLALIGALNNPNKSRLSKLGKIATTITKLFK |
Ga0244776_104701852 | 3300024348 | Estuarine | MRVTHTPYKKKTRAIGSDLEMTLALIGALRTPTTSKLGKFQKIATTLTKLFK |
Ga0208795_10527901 | 3300025655 | Aqueous | MRVTNTPYKVKTRAIGSDLEMTIAIVGALMNPSASKFGKLQKLTQTL |
Ga0208916_100435953 | 3300025896 | Aqueous | MRVTHTPFKTRTRAIGSDLEMTIALLGALKNSNKSAFSKIGKIATTLAKLFK |
Ga0208925_1130791 | 3300027203 | Estuarine | MRVTHTPFKTKTRAIGSDLEMTLALIGALNNPNKSRLSKLGKI |
Ga0208554_10694871 | 3300027212 | Estuarine | MRVTHTPFKTRTRAIGSDLEMTLALIGALRNPNKNAFSKLGKIATTITKLFK |
Ga0208974_100009719 | 3300027608 | Freshwater Lentic | MRITHTPFKTRTRAIGSDVEMTLAFVGALKNPNKSAFSKLGKIATTLAKLFK |
Ga0208974_10114272 | 3300027608 | Freshwater Lentic | MRVTHTPFRTRTRAIGSDLEMTIALLGALGNPKQSKLSKLGKIATTITRLFK |
Ga0208951_11073551 | 3300027621 | Freshwater Lentic | ITMRVTHTPFRTRTRAIGSDLEITLALIGALGNPKQGKLSKLGKLATTITRLFK |
Ga0208975_100044023 | 3300027659 | Freshwater Lentic | MRVTHTPYKTKTRAIGSDLEMTLALVGALKNPNKSAISKLGKIATTLTKLFK |
Ga0208975_10173162 | 3300027659 | Freshwater Lentic | MRVTHTPFKTKTRAIGSDLEMTLALVGALKNPNKSTFSKLGKIATTLAKLLK |
Ga0208975_10237923 | 3300027659 | Freshwater Lentic | VRVTHTPFKTKTRAIGSDLEMTLALIGALKNPNKSAFSKLGKIATTIAKLFK |
Ga0208975_10260422 | 3300027659 | Freshwater Lentic | MRVTHTPFRTRTRAIGSDLEMTLALLGALNNPKQSKLSKLGKIATTITRLFK |
Ga0209704_10243902 | 3300027693 | Freshwater Sediment | MRVTHTPFKTKTRAIGSDLEMTIALLGALKNPKQSKLSKLGKIATTITKLFK |
Ga0209492_100118712 | 3300027721 | Freshwater Sediment | MRITHTPFKTKTRAIGSDIEMTLALLGALRNPKQSAFSKLGKVATTLTKLFK |
Ga0209492_10049593 | 3300027721 | Freshwater Sediment | MRVTNTPYKVKTRAIGSDLEMTIALVGALMNPNASKFGKLQKITQTLTRLLK |
Ga0209492_13227532 | 3300027721 | Freshwater Sediment | VRVTHTPFKTRTRAIGSDLEMTIALLGALRNPNKSAISKLGKIATTLTKLFK |
Ga0209134_100021384 | 3300027764 | Freshwater Lake | MRVTHTPYKTKPRAIGSDLEMTIALIGALNNPNKRRLSKLGKIATTLTRLLK |
Ga0209246_1000046012 | 3300027785 | Freshwater Lake | MRVTHTPYKTRPRAIGSDLEMTLALVGALKNPNKSAISKLGKIATTLTKLFK |
Ga0209246_1000223712 | 3300027785 | Freshwater Lake | VRVTHTPFKTKTRAIGSDLEMTLALVGALKNPNKSAFSKLGKIATTLAKLIK |
Ga0209246_100023426 | 3300027785 | Freshwater Lake | MRVTHTPFKIRTRAIGSDLEMTLALVGALKNPNKSAFNKLGKIATTLAKLFK |
Ga0209246_100176566 | 3300027785 | Freshwater Lake | MRVTHTPFKTKTRAIGSDLEMTLALLGALNNPNKSRLSKLGKIATTLTRLLK |
Ga0209246_100278843 | 3300027785 | Freshwater Lake | MRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAFSKLGKIATTLTKLFK |
Ga0209820_100234711 | 3300027956 | Freshwater Sediment | MRVTHTPFKTKTRAIGSDLEMTLALLGALKNPNKSAISKLGKIATTITKLFK |
Ga0316195_100458463 | 3300032263 | Sediment | MRVTHTPFKKKTRVIGSDLGMMLALIGTLKNPTTSKVGKFQKITGILTKLLK |
Ga0335003_0003685_1226_1384 | 3300033995 | Freshwater | MRVTHTPFKTRTRAIGSDLEMTIALLGALKNPNKSAFSKIGKIATTLTKLFK |
Ga0335003_0229464_692_850 | 3300033995 | Freshwater | MRVTHTPFKTRTRAIGSDLEMTIALIGALKNPKKSAVSKIGKIATTLTKLFK |
Ga0335003_0409777_429_578 | 3300033995 | Freshwater | THTPFKTRTRAIGSDLEMTIALLSALKNPNKSAFSKIGKIATTLTKLFK |
Ga0335003_0484505_391_513 | 3300033995 | Freshwater | RAIGSDLEMTIALLGALKNPNKSAFSKISKIATTLTKLFK |
Ga0334986_0206984_648_806 | 3300034012 | Freshwater | MRVTHTPFKTKTRAIGSDLEMTLALLGALNNPKQSKLSKLGKIATTITKLFK |
Ga0334986_0512352_52_210 | 3300034012 | Freshwater | MRVTHTPFKTRTRAIGSDLEMTIALLGALRNPKQSKLSKLGKIATTLTKLFK |
Ga0334991_0215033_629_787 | 3300034013 | Freshwater | MRVTHTPFKTRTRAIGSDLEMTLALLGALKNPNKSAISKLGKIATTITKLFK |
Ga0335023_0000133_32670_32828 | 3300034050 | Freshwater | MRVTHTPFKTKTRAIGSDLEMTLALLGALKNPNKSAISKLGKIATTLTKLFK |
Ga0335001_0053009_169_327 | 3300034064 | Freshwater | MRVTHTPFKTRTRAIGSDLEMTIALLGALRNPKQSAFSKIGKIATTLTKLFK |
Ga0335019_0767043_3_161 | 3300034066 | Freshwater | MRVTHTPFKTRTRAIGSDLEMTIALLGALRNPKQSILSKLGKIATTLTKLFK |
Ga0335037_0133014_1223_1357 | 3300034107 | Freshwater | MRVTHTPYKTKTRAIGSDLELTIALIGALRSPTTSKLGKIQRITG |
Ga0335037_0732825_183_341 | 3300034107 | Freshwater | MRVTHTPFKTRTRAIGSDLEMTIALLGALRNPKKSAVSKIGKIATTLTKLFK |
Ga0335058_0013031_619_777 | 3300034121 | Freshwater | MRVTHTPFKTRTRAIGSDLEMTLALLGALRNPKQSKLSKLGKIATTLTKLFK |
Ga0335058_0143319_1134_1292 | 3300034121 | Freshwater | MRVTHTPFKTRTRAIGSDLEMTIALLGALRNPKQSKLSKLGKIATTITKLFK |
Ga0335058_0479883_583_705 | 3300034121 | Freshwater | RAIGSDLEMTIALLGALRNPKQSKLSKLGKIATTLTKLFK |
Ga0335061_0216163_1_123 | 3300034168 | Freshwater | RAIGSDLEMTIALLGALKNPNKSAFSKIGKIATTLTKLFK |
⦗Top⦘ |