Metagenome Family F080800

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080800
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	65 residues
Representative Sequence	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHTKSLSHTRKGSGRKHQQGKA
Number of Associated Samples	80
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.32 %
% of genes near scaffold ends (potentially truncated)	29.82 %
% of genes from short scaffolds (< 2000 bps)	64.91 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (72.807 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (37.719 % of family members)
Environment Ontology (ENVO)	Unclassified (85.965 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (84.211 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1TB03JUN2009H_0332642 2TB03JUN2009E_0407222 3TB03JUN2009E_0469221 4TBL_comb48_EPIDRAFT_10101966 5TBL_comb47_HYPODRAFT_101272513 6JGI24028J26656_100016418 7JGI24028J26656_10034154 8JGI24218J26658_10007149 9JGI24890J29729_10011311 10G310J44882_100973291 11G310J44882_101132302 12G310J44882_101134432 13JGI26470J50227_10186461 14Ga0007851_10000224 15Ga0007851_1055752 16Ga0007865_10023363 17Ga0007865_10121722 18Ga0007838_10041853 19Ga0007869_10206551 20Ga0007879_10324172 21Ga0007872_10044782 22Ga0031655_102253042 23Ga0065177_10244473 24Ga0065171_10141402 25Ga0007804_10423971 26Ga0007804_11807152 27Ga0007794_100553252 28Ga0007794_101340641 29Ga0007794_101613862 30Ga0007794_102636302 31Ga0007798_100550601 32Ga0007800_100067422 33Ga0007800_100733372 34Ga0007792_100476361 35Ga0007792_100522981 36Ga0007792_101614902 37Ga0007854_100447921 38Ga0007854_101204322 39Ga0007854_101545872 40Ga0007824_10580432 41Ga0075030_1000167971 42Ga0073936_100422743 43Ga0073936_102201583 44Ga0073936_102310581 45Ga0114951_100340631 46Ga0114951_102135992 47Ga0114951_104754382 48Ga0164296_10027823 49Ga0164296_10499544 50Ga0164296_11482122 51Ga0164297_100478841 52Ga0164297_100755811 53Ga0194038_11305932 54Ga0214234_1013102 55Ga0214239_1003221 56Ga0214230_1367411 57Ga0214237_100089312 58Ga0214178_10261453 59Ga0214252_10278641 60Ga0214249_10620192 61Ga0214246_10229852 62Ga0214219_10205042 63Ga0214199_10111772 64Ga0214196_10307081 65Ga0214175_10300632 66Ga0214247_10471912 67Ga0214167_10026672 68Ga0214167_10996091 69Ga0214164_10100042 70Ga0214164_11116972 71Ga0214166_10026581 72Ga0212088_100518763 73Ga0212088_100727972 74Ga0212088_104356262 75Ga0236341_10040584 76Ga0256681_111550785 77Ga0209083_10258051 78Ga0208255_10000425 79Ga0208385_10325202 80Ga0207957_10035471 81Ga0208259_10204612 82Ga0208259_10323131 83Ga0208871_100010021 84Ga0208871_10003425 85Ga0208875_100088113 86Ga0208111_10002755 87Ga0208506_10015481 88Ga0208103_10093822 89Ga0208102_10120194 90Ga0208495_10119581 91Ga0208248_10260181 92Ga0208741_100647062 93Ga0208110_10003747 94Ga0208869_10202741 95Ga0208872_11139211 96Ga0209777_105358622 97Ga0209698_100084486 98Ga0239579_10395832 99Ga0316219_100055145 100Ga0316219_10060721 101Ga0316219_10229662 102Ga0316219_10817862 103Ga0316219_11637972 104Ga0316217_100846103 105Ga0316218_11404752 106Ga0316218_11532072 107Ga0316223_10253412 108Ga0316223_10417721 109Ga0316226_11811043 110Ga0316228_11380272 111Ga0316232_11760872 112Ga0316229_11746272 113Ga0316227_11123053 114Ga0316224_12829662
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1TB03JUN2009H_0332642 2TB03JUN2009E_0407222 3TB03JUN2009E_0469221 4TBL_comb48_EPIDRAFT_10101966 5JGI24218J26658_10007149 6Ga0075030_1000167971 7Ga0114951_104754382 8Ga0164296_10499544 9Ga0164296_11482122 10Ga0214164_11116972
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1TB03JUN2009H_0332642 2TB03JUN2009E_0407222 3TB03JUN2009E_0469221 4TBL_comb48_EPIDRAFT_10101966 5JGI24218J26658_10007149 6Ga0075030_1000167971 7Ga0114951_104754382 8Ga0164296_10499544 9Ga0164296_11482122 10Ga0214164_11116972
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.85% β-sheet: 0.00% Coil/Unstructured: 66.15%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00476	DNA_pol_A	12.28
PF13392	HNH_3	6.14
PF10926	DUF2800	5.26
PF16793	RepB_primase	3.51
PF04851	ResIII	3.51
PF09588	YqaJ	2.63
PF06378	DUF1071	1.75
PF09979	DUF2213	1.75
PF03118	RNA_pol_A_CTD	1.75
PF00436	SSB	1.75

Showing 1 to 10 of 17 entries

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COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	12.28
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	1.75
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	1.75
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	1.75
COG1444	tRNA(Met) C34 N-acetyltransferase TmcA	Translation, ribosomal structure and biogenesis [J]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	27.19 %
Unclassified	root	N/A	72.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	8.77 %
Unclassified	root	N/A	72.81 %
Viruses	superkingdom	All Organisms → Viruses	18.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.77 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	11.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.02 %
Unclassified	root	N/A	72.81 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	11.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.51 %
Unclassified	root	N/A	72.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.02 %
Unclassified	root	N/A	72.81 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	11.40 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.75 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11.40 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.02 %
Unclassified	root	N/A	72.81 %

Name	Rank	Taxonomy	Distribution
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.88 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.88 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	10.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.02 %
Unclassified	root	N/A	72.81 %

Name	Rank	Taxonomy	Distribution
Brevundimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	0.88 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.02 %
Unclassified	root	N/A	72.81 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10.53 %

Name	Rank	Taxonomy	Distribution
Brevundimonas naejangsanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → Brevundimonas naejangsanensis	0.88 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.02 %
Unclassified	root	N/A	72.81 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10.53 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000162\|TB03JUN2009H_c033264	Not Available	533	Open in IMG/M
3300000176\|TB03JUN2009E_c046922	Not Available	561	Open in IMG/M
3300000439\|TBL_comb48_EPIDRAFT_1010196	All Organisms → cellular organisms → Bacteria	5146	Open in IMG/M
3300000553\|TBL_comb47_HYPODRAFT_10127251	Not Available	1169	Open in IMG/M
3300002091\|JGI24028J26656_1000164	Not Available	28515	Open in IMG/M
3300002091\|JGI24028J26656_1003415	All Organisms → Viruses → Predicted Viral	2681	Open in IMG/M
3300002092\|JGI24218J26658_1000714	Not Available	13654	Open in IMG/M
3300002307\|JGI24890J29729_1001131	Not Available	12929	Open in IMG/M
3300002933\|G310J44882_10097329	Not Available	619	Open in IMG/M
3300002933\|G310J44882_10113230	Not Available	568	Open in IMG/M

Showing 1 to 10 of 113 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	98.25%
Sediment	Environmental → Aquatic → Sediment	1.75%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	16.67%
Lentic	Environmental → Aquatic → Freshwater → Lentic	81.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.75%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	8.77%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	28.07%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	3.51%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	41.23%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	16.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.75%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	37.72%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	28.07%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	8.77%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.26%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.39%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater	1.75%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.88%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	5.26%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.75%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	3.51%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.75%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000162	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion	Environmental	Open in IMG/M
3300000176	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300000553	Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental	Open in IMG/M
3300002092	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome	Environmental	Open in IMG/M
3300002307	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7	Environmental	Open in IMG/M
3300002933	Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003785	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08	Environmental	Open in IMG/M

Showing 1 to 10 of 80 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TB03JUN2009H_0332642	3300000162	Freshwater	KENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSVKIHHTKSLSHTRKGSGRKHQQGKA*
TB03JUN2009E_0407222	3300000176	Freshwater	MKDKEIVLSPDARRAMAKVKMEMIRVAQVNIKNIFPALGEKIPKIHHTKSSSNTKKGSGRRHLQGK*
TB03JUN2009E_0469221	3300000176	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKIENIFPSLGAKSEKIHHTKSKSNTKKGVGRKHKQGKA*
TBL_comb48_EPIDRAFT_10101966	3300000439	Freshwater	MVDRSNLNPTERRQISEVKMAMVRAAQVNIKNIFPSLGAKSEKVHHTKSLSHTRKGSGRKHQQGKVV*
TBL_comb47_HYPODRAFT_101272513	3300000553	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHPKSKSNTKKGVGRKHKQGKV*
JGI24028J26656_100016418	3300002091	Lentic	MVDRSNLSPDERRAISKIKMEMVRVAHVNIKNIFPALGVKSDKVHHTKSLSHTRKGSGRRHQQGK*
JGI24028J26656_10034154	3300002091	Lentic	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHTKSLSHTRKGSGRKHQQGKA*
JGI24218J26658_10007149	3300002092	Lentic	MNHKDQIVLSPDARRGMAEVKMAMVRAASVEIKNIFPALGMKMPKVHQTKSLSHTRKGSGRKHKQGK*
JGI24890J29729_10011311	3300002307	Lentic	PNLENKMNKENLSPDDRRAISQVKLALVKAAGVXLENIFPSLGAKXEKIHHTKSLSHTRKGSGRKHQQGKA*
G310J44882_100973291	3300002933	Freshwater	MNHKDQVVLSPDARKAIAAVQMEMIKNAKVDIKNLFPALGMKMPKVHHTKSLSHTRKGSGRKHKQGKV*
G310J44882_101132302	3300002933	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSG
G310J44882_101134432	3300002933	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKLENIFPSLGAKSEKIHHTKSLSHTRKGSGRKHQQGKA*
JGI26470J50227_10186461	3300003375	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGSGRKHKQGK*
Ga0007851_10000224	3300003785	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAQVNIRNIFPGLGAKSAKIHHTKNGSSTKKGSGRKHQQGK*
Ga0007851_1055752	3300003785	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSVKIHHTKSVSNTKKGSGRKHKQGKK*
Ga0007865_10023363	3300003796	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHTKSKSSTKKGVGRKHKQGKS*
Ga0007865_10121722	3300003796	Freshwater	MVDRSNLSPDERRQISEVKMAMVRAAQLNLKNIFTGLGAKSPKIHHTKSLSHTRKGSGRKHQQGK*
Ga0007838_10041853	3300003805	Freshwater	MRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSVKIHHTKSLSHTRKGSGRKHQQGKA*
Ga0007869_10206551	3300003809	Freshwater	MVXRSNLNPTERRQISEVKIAMVRAAQVNIKNIFPSLGIKSEKVHHTKSLSHTRKGSG
Ga0007879_10324172	3300003813	Freshwater	MVDRSNLNPTERRQISEVKIAMVRAAQVNIKNIFPSLGIKSEKVHHTKSLSHTRKGSGRKHQQGK*
Ga0007872_10044782	3300003826	Freshwater	MRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKK*
Ga0031655_102253042	3300003852	Freshwater Lake Sediment	MNHKDQIVLSPDARKAIAQVKLALVKAAGVKIENIFPSLGAKSEKIHHTKSKSNTKKGVGRKHKQGKA*
Ga0065177_10244473	3300004685	Freshwater	KENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGSKSEKIHHSKSKSNTKKGSGRKHKQGKA*
Ga0065171_10141402	3300004692	Freshwater	MVDRSNLTPTERRQISEVKMAMVRAAQLNLKNIFSGLGAKSPKVHHTKSLSHTRKGSGRKHQQGK*
Ga0007804_10423971	3300004770	Freshwater	IMVDRSNLSPDERRQISEVKMAMVRAAQLNLKNIFTGLGAKSPKIHHTKSLSHTRKGSGRKHQQGK*
Ga0007804_11807152	3300004770	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGLKLENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHKQGKA*
Ga0007794_100553252	3300004774	Freshwater	MNHKDQIVLSPDARKAIAQVKLALVKAAGVKIENIFPSLGAKSEKIHHTKSKSSTKKGVGRKHKQGKS*
Ga0007794_101340641	3300004774	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGLKLENIFPSLGAKSVKIHHTKSVSNTKKGSGRKHKQGK*
Ga0007794_101613862	3300004774	Freshwater	TPPNLENKMNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGVGRKHKQGK*
Ga0007794_102636302	3300004774	Freshwater	LENKMNKENLSPDDRRAISQVKLALVKAAGLKLENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKV*
Ga0007798_100550601	3300004775	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGVGRKHKQGK*
Ga0007800_100067422	3300004776	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGVGRKHKQGK*
Ga0007800_100733372	3300004776	Freshwater	MNHKDQIVLSPDARKAIAQVKLALVKAAGVKIENIFPSLGAKSEKIHHTKSKSSTKKGVGRKHKQGK*
Ga0007792_100476361	3300004805	Freshwater	LSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKA
Ga0007792_100522981	3300004805	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHTKSKSSTKKGVGRKHKQ
Ga0007792_101614902	3300004805	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSEKIHHTKSKSSTKKGVGRKHKQGK*
Ga0007854_100447921	3300004806	Freshwater	ENKMRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGSKSEKIHHSKSKSNTKKGSGRKHKQGKA*
Ga0007854_101204322	3300004806	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGSGRKHKQGK*
Ga0007854_101545872	3300004806	Freshwater	ENKMRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKK*
Ga0007824_10580432	3300006121	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGLKLENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKS*
Ga0075030_1000167971	3300006162	Watersheds	MTTHQDVAISPDARRAISMVRMEMVRMAQVQIKNIFPSLGQKSPKIHHTKSLSHTRKGSGRKHQQGKVV*
Ga0073936_100422743	3300009175	Freshwater Lake Hypolimnion	MVDRSNLSADERRAISKLKMEMVRVAHVNIKNIFPALGNKSDKVHQTKSLSHTRKGSGRRHQQGK*
Ga0073936_102201583	3300009175	Freshwater Lake Hypolimnion	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGTKSEKIHHSKSKSSTKKGAGRKHKQGKA*
Ga0073936_102310581	3300009175	Freshwater Lake Hypolimnion	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHTKSLSHTRKGSGRKHKQGKK*
Ga0114951_100340631	3300009502	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSSTKKGAGRKHKQGKA*
Ga0114951_102135992	3300009502	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHPKSKSNTKKGVGRKHKQGK*
Ga0114951_104754382	3300009502	Freshwater	MNHKDQIVLSPDARRAIALVQMEMVKKANLDIKIIFPALKMKMPKTRTSKNAHFTRKGSGRYHPNVAEMTAR
Ga0164296_10027823	3300013093	Freshwater	MVDRSNLNPTERRQISEVKMLMVKMAQLNIKNIFPSLSIKSEKVHHTKSLSHTRKGSGRKHQQGK*
Ga0164296_10499544	3300013093	Freshwater	LQLNPKEKMEKKNLTSNERKAISDVKMAMVRAASLDIKNIFPSLGIKNPKIHHTKSLSHTKKGSGRKHQQGK*
Ga0164296_11482122	3300013093	Freshwater	MDRSKLNAEDRRAISDVKMMLVKMANVDIRNIFPSLGQKSPKIHHTKSLSHTRKGSGRKHQQGK*
Ga0164297_100478841	3300013094	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGK*
Ga0164297_100755811	3300013094	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHTKSKSSTKKGVGRKHKQGKS*
Ga0194038_11305932	3300020158	Anoxic Zone Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSEKIHHTKSKSSTKKGVGRKHKQGK
Ga0214234_1013102	3300020683	Freshwater	MRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSVKIHHTKSLSHTRKGSGRKHQQGKA
Ga0214239_1003221	3300020688	Freshwater	MVDRSNLNPTERRQISEVKMAMVRAAQVNIKNIFPSLGAKSEKVHHTKSLSHTRKGSGRKHQ
Ga0214230_1367411	3300020697	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKLENIFPSLGAKSEKIHHTKSLSHTRKGSGRKHQQGKA
Ga0214237_100089312	3300020711	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSVKIHHTKSLSHTRKGSGRKHQQGKA
Ga0214178_10261453	3300020718	Freshwater	DDRRAISQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKA
Ga0214252_10278641	3300020720	Freshwater	AISQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKA
Ga0214249_10620192	3300020723	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKA
Ga0214246_10229852	3300020727	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKIENIFPSLGAKSEKIHHTKSKSNTKKGVGRKHKQGKA
Ga0214219_10205042	3300020735	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHPKSKSNTKKGVGRKHKQGKV
Ga0214199_10111772	3300021124	Freshwater	MRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGVGRKHKQGKA
Ga0214196_10307081	3300021132	Freshwater	VAPPNLTRGQIMVDRSNLNPTERRQISEVKMAMVRAAQVNIKNIFPSLGAKSEKVHHTKSLSHTRKGSGRKHQQGKVV
Ga0214175_10300632	3300021133	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKIENIFSSLGAKSEKIHHTKSKSNTKKGVGRKHKQGKA
Ga0214247_10471912	3300021135	Freshwater	MVDRSNLNPTERRQISEVKMAMVRAAQVNIKNIFPSLGAKSEKVHHTKSLSHTRKGSGRKHQQGK
Ga0214167_10026672	3300021136	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKA
Ga0214167_10996091	3300021136	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKLENIFPSLGAKSEKIHHTKSESSTKKGVGRKHKQGKK
Ga0214164_10100042	3300021138	Freshwater	MVDRSNLNPTERRQISEVKMAMVRAAQVNIKNIFPSLGVKSEKVHHTKSLSHTRKGSGRKHQQGK
Ga0214164_11116972	3300021138	Freshwater	MTEKKHLTPDDRRAISLVKMELVKMAHVNIKNIFPSLGFKSEKIHHTKNGSYTKKGSGRKHLQGKQS
Ga0214166_10026581	3300021139	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGK
Ga0212088_100518763	3300022555	Freshwater Lake Hypolimnion	MVDRSNLSADERRAISKLKMEMVRVAHVNIKNIFPALGNKSDKVHQTKSLSHTRKGSGRRHQQGK
Ga0212088_100727972	3300022555	Freshwater Lake Hypolimnion	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSSTKKGAGRKHKQGK
Ga0212088_104356262	3300022555	Freshwater Lake Hypolimnion	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHPKSKSNTKKGVGRKHKQGK
Ga0236341_10040584	3300022591	Freshwater	MNKENLSPDDRRAITQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKA
Ga0256681_111550785	3300023311	Freshwater	NLENKMNKENLSPDDRRAITQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKA
Ga0209083_10258051	3300025162	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSSTKKGAGRKHKQG
Ga0208255_10000425	3300025353	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAQVNIRNIFPGLGAKSAKIHHTKNGSSTKKGSGRKHQQGK
Ga0208385_10325202	3300025363	Freshwater	MRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGSKSEKIHHSKSKSNTKKGSGRKHKQGKA
Ga0207957_10035471	3300025372	Freshwater	MVDRSNLTPTERRQISEVKMAMVRAAQLNLKNIFSGLGAKSPKVHHTKSLSHTRKGSGRKHQQGK
Ga0208259_10204612	3300025375	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGSGRKHKQGK
Ga0208259_10323131	3300025375	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSVKIHHTKSVSNTKKGSGRKHKQGKK
Ga0208871_100010021	3300025381	Freshwater	MVDRSNLSPDERRQISEVKMAMVRAAQLNLKNIFTGLGAKSPKIHHTKSLSHTRKGSGRKHQQGK
Ga0208871_10003425	3300025381	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHTKSKSSTKKGVGRKHKQGKS
Ga0208875_100088113	3300025410	Freshwater	NLENKMRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKK
Ga0208111_10002755	3300025420	Freshwater	MRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGKK
Ga0208506_10015481	3300025428	Freshwater	NLENKMRKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGSKSEKIHHSKSKSNTKKGSGRKHKQGKA
Ga0208103_10093822	3300025436	Freshwater	MNKENLSPDDRRAITQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGSGRKHKQGK
Ga0208102_10120194	3300025447	Freshwater	RRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHTKSKSNTKKGVGRKHKQGKA
Ga0208495_10119581	3300025476	Freshwater	PDARKAIAQVKLALVKAAGVKIENIFPSLGAKSEKIHHSKSKSNTKKGVGRKHKQGK
Ga0208248_10260181	3300025595	Freshwater	RRAISQVKLALVKAAGLKLENIFPSLGAKSVKIHHTKSVSNTKKGSGRKHKQGK
Ga0208741_100647062	3300025723	Freshwater	MRKENLSPDDRRAISQVKLALVKAASVKLENIFPSLGAKSEKIHHSKSKSNTKKGVGRKHKQGK
Ga0208110_10003747	3300025777	Freshwater	KDQIVLSPDARKAIAQVKMEMVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGSGRKHKQGK
Ga0208869_10202741	3300025779	Freshwater	MVDRSNLNPTERRQISEVKMAMVRAAQVNIKNIFPSLGAKSEKVHHTKSLSHTRKGSGRKHQQGKVV
Ga0208872_11139211	3300025838	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGLKLENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHKQGKA
Ga0209777_105358622	3300027896	Freshwater Lake Sediment	MVDRSNLTPDERRQINAVKMAMVRAAQVNIKNIFPSLGVKSEKVHHTKSLSHTRKGSGRKHQQGK
Ga0209698_100084486	3300027911	Watersheds	MTTHQDVAISPDARRAISMVRMEMVRMAQVQIKNIFPSLGQKSPKIHHTKSLSHTRKGSGRKHQQGKVV
Ga0239579_10395832	3300029442	Freshwater Lake	NLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGVGRKHKQGK
Ga0316219_100055145	3300031759	Freshwater	MVDRSNLNPTERRQISEVKMLMVKMAQLNIKNIFPSLSIKSEKVHHTKSLSHTRKGSGRKHQQGK
Ga0316219_10060721	3300031759	Freshwater	MDRSKLNAEDRRAISDVKMMLVKMANVDIRNIFPSLGQKSPKIHHTKSLSHTRKGSGRKHQQGK
Ga0316219_10229662	3300031759	Freshwater	MKKENLSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGK
Ga0316219_10817862	3300031759	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKIENIFPSLGAKSEKIHHTKSKSSTKKGVGRKHKQGKA
Ga0316219_11637972	3300031759	Freshwater	MEKKNLTSNERKAISDVKMAMVRAASLDIKNIFPSLGIKNPKIHHTKSLSHTKKGSGRKHQQGK
Ga0316217_100846103	3300031813	Freshwater	MNKENLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGSGRKHKQGK
Ga0316218_11404752	3300032117	Freshwater	MKDKEIVLSPNARRAMAKVKMEMIRVAQVNIKNIFPALGEKIPKIHHTKSSSNTKKGSGRRHLQGK
Ga0316218_11532072	3300032117	Freshwater	MDRSKLNAEDRRAISDVKMMLVKMANVDIRNIFPSLGQKSPKIHHTKSLSHTRKGPGRKHQQGK
Ga0316223_10253412	3300032560	Freshwater	MKKENVSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGK
Ga0316223_10417721	3300032560	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKIENIFPSLGAKSEKIHHTKSKSSTKKGVGRK
Ga0316226_11811043	3300032562	Freshwater	NLSPDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGSGRKHKQGK
Ga0316228_11380272	3300032579	Freshwater	IPPNLENKMKKENLSPDDRRAISQVKLALVKAAGVKIENIFPSLGAKSAKIHHTKSLSHTRKGSGRKHQQGK
Ga0316232_11760872	3300032605	Freshwater	MEKKNLTSNERKAISDVKMAMVRAASLDIKNIFPSLDIKNPKIHHTKSLSHTKKGSGRKHQQGK
Ga0316229_11746272	3300032676	Freshwater	LQLNPKEKMEKKNLTSNERKAISDVKMAMVRAASLDIKNIFPSLGIKNPKIHHTKSLSHTKKGSGRKHQQGK
Ga0316227_11123053	3300032677	Freshwater	PDDRRAISQVKLALVKAAGVKLENIFPSLGAKSEKIHHSKSKSNTKKGSGRKHKQGK
Ga0316224_12829662	3300032753	Freshwater	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKIENIFPSLGAKSEKIHHTKSKSSTKKGVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080800

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences