Metagenome Family F080635

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080635
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	81 residues
Representative Sequence	MTHREHLAQADRFIAECKDRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQS
Number of Associated Samples	75
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.38 %
% of genes near scaffold ends (potentially truncated)	33.04 %
% of genes from short scaffolds (< 2000 bps)	71.30 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.348 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (28.696 % of family members)
Environment Ontology (ENVO)	Unclassified (50.435 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.217 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.97% β-sheet: 0.00% Coil/Unstructured: 33.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
e.32.1.1: Phase 1 flagellin	d1io1a_	1io1	0.87614
c.49.2.0: automated matches	d5ik2g_	5ik2	0.87383
a.238.1.3: IMD domain	d1y2oa1	1y2o	0.83903
c.49.2.0: automated matches	d6rdps_	6rdp	0.82324
c.49.2.1: ATP synthase (F1-ATPase), gamma subunit	d2jdig_	2jdi	0.81874

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01068	DNA_ligase_A_M	6.09
PF13492	GAF_3	3.48
PF00589	Phage_integrase	1.74
PF13185	GAF_2	1.74
PF13365	Trypsin_2	1.74
PF03401	TctC	0.87
PF00313	CSD	0.87
PF03237	Terminase_6N	0.87
PF05598	DUF772	0.87
PF00753	Lactamase_B	0.87
PF07369	DUF1488	0.87
PF07859	Abhydrolase_3	0.87
PF00005	ABC_tran	0.87
PF03480	DctP	0.87
PF07885	Ion_trans_2	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	6.09
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	6.09
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.87
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.35 %
Unclassified	root	N/A	35.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.35 %
Unclassified	root	N/A	35.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.35 %
Unclassified	root	N/A	35.65 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.52 %
Unclassified	root	N/A	35.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.61 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.91 %
Unclassified	root	N/A	35.65 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.61 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	35.65 %
Unclassified	root	N/A	35.65 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	35.65 %
Unclassified	root	N/A	35.65 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.35 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	35.65 %
Unclassified	root	N/A	35.65 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	2.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.87 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	35.65 %
Unclassified	root	N/A	35.65 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	2.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %
Azospirillum thiophilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	0.87 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	35.65 %
Unclassified	root	N/A	35.65 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	2.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %
Bradyrhizobium sp. Rc2d	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	0.87 %
Azospirillum thiophilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16679523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10766	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1004557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2245	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10007601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2560	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1025392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1017262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1015	Open in IMG/M
3300001431\|F14TB_103909860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300004267\|Ga0066396_10046495	Not Available	684	Open in IMG/M
3300004281\|Ga0066397_10170751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	510	Open in IMG/M
3300004479\|Ga0062595_100451460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	944	Open in IMG/M
3300004479\|Ga0062595_100487473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	920	Open in IMG/M
3300004633\|Ga0066395_10018359	All Organisms → cellular organisms → Bacteria	2740	Open in IMG/M
3300005093\|Ga0062594_100867663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	846	Open in IMG/M
3300005172\|Ga0066683_10547861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300005178\|Ga0066688_10788654	Not Available	595	Open in IMG/M
3300005332\|Ga0066388_100020011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5813	Open in IMG/M
3300005332\|Ga0066388_100077173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3678	Open in IMG/M
3300005332\|Ga0066388_100702090	Not Available	1618	Open in IMG/M
3300005332\|Ga0066388_101246605	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300005332\|Ga0066388_101439326	All Organisms → cellular organisms → Bacteria → Proteobacteria	1200	Open in IMG/M
3300005332\|Ga0066388_102703945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300005332\|Ga0066388_103566760	Not Available	794	Open in IMG/M
3300005332\|Ga0066388_105230780	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300005332\|Ga0066388_105910370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300005332\|Ga0066388_108316209	Not Available	517	Open in IMG/M
3300005450\|Ga0066682_10536967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	740	Open in IMG/M
3300005713\|Ga0066905_100067891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2279	Open in IMG/M
3300005713\|Ga0066905_100216462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1445	Open in IMG/M
3300005713\|Ga0066905_100229384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1411	Open in IMG/M
3300005713\|Ga0066905_100463617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1045	Open in IMG/M
3300005713\|Ga0066905_100603786	Not Available	929	Open in IMG/M
3300005713\|Ga0066905_101052137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	720	Open in IMG/M
3300005713\|Ga0066905_101518811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	610	Open in IMG/M
3300005713\|Ga0066905_101597076	Not Available	596	Open in IMG/M
3300005764\|Ga0066903_100248035	All Organisms → cellular organisms → Bacteria → Proteobacteria	2742	Open in IMG/M
3300005764\|Ga0066903_100462612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2127	Open in IMG/M
3300005764\|Ga0066903_100882356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1615	Open in IMG/M
3300005764\|Ga0066903_104632734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	732	Open in IMG/M
3300005764\|Ga0066903_105754798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	651	Open in IMG/M
3300005764\|Ga0066903_105900935	Not Available	642	Open in IMG/M
3300005764\|Ga0066903_107771863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300006034\|Ga0066656_11054149	Not Available	522	Open in IMG/M
3300006852\|Ga0075433_11678509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	547	Open in IMG/M
3300006854\|Ga0075425_101392613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300006854\|Ga0075425_101418012	Not Available	786	Open in IMG/M
3300006871\|Ga0075434_100673274	Not Available	1053	Open in IMG/M
3300006871\|Ga0075434_100971333	Not Available	864	Open in IMG/M
3300007076\|Ga0075435_100799278	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300009094\|Ga0111539_10672528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1205	Open in IMG/M
3300009156\|Ga0111538_11369296	Not Available	893	Open in IMG/M
3300009792\|Ga0126374_10332864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1033	Open in IMG/M
3300010043\|Ga0126380_11356510	Not Available	622	Open in IMG/M
3300010046\|Ga0126384_12362204	Not Available	514	Open in IMG/M
3300010048\|Ga0126373_11004925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	899	Open in IMG/M
3300010360\|Ga0126372_11178738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	789	Open in IMG/M
3300010362\|Ga0126377_11022931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	893	Open in IMG/M
3300010366\|Ga0126379_10092508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2661	Open in IMG/M
3300010376\|Ga0126381_102785350	Not Available	698	Open in IMG/M
3300010863\|Ga0124850_1000541	All Organisms → cellular organisms → Bacteria	8521	Open in IMG/M
3300010863\|Ga0124850_1005665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3923	Open in IMG/M
3300010863\|Ga0124850_1012173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2737	Open in IMG/M
3300012198\|Ga0137364_10294959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1203	Open in IMG/M
3300012198\|Ga0137364_11341609	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300012198\|Ga0137364_11402775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300012200\|Ga0137382_10295344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1129	Open in IMG/M
3300012201\|Ga0137365_10802901	Not Available	687	Open in IMG/M
3300012207\|Ga0137381_10622746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	940	Open in IMG/M
3300012208\|Ga0137376_10140070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2076	Open in IMG/M
3300012211\|Ga0137377_10020209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	5873	Open in IMG/M
3300012948\|Ga0126375_11960709	Not Available	516	Open in IMG/M
3300012971\|Ga0126369_10192695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1958	Open in IMG/M
3300012971\|Ga0126369_11318976	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300015357\|Ga0134072_10415728	Not Available	534	Open in IMG/M
3300015371\|Ga0132258_12354757	Not Available	1335	Open in IMG/M
3300015372\|Ga0132256_103915324	Not Available	501	Open in IMG/M
3300016371\|Ga0182034_10513545	Not Available	1001	Open in IMG/M
3300016387\|Ga0182040_10586379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	901	Open in IMG/M
3300016404\|Ga0182037_10101476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2072	Open in IMG/M
3300018433\|Ga0066667_10251635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1339	Open in IMG/M
3300018468\|Ga0066662_10310417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1331	Open in IMG/M
3300021560\|Ga0126371_10272011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1814	Open in IMG/M
3300021560\|Ga0126371_10666199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1189	Open in IMG/M
3300027527\|Ga0209684_1031358	Not Available	814	Open in IMG/M
3300027654\|Ga0209799_1089429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	697	Open in IMG/M
3300031543\|Ga0318516_10001026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10120	Open in IMG/M
3300031545\|Ga0318541_10364511	Not Available	807	Open in IMG/M
3300031546\|Ga0318538_10094770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1533	Open in IMG/M
3300031719\|Ga0306917_10433473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1028	Open in IMG/M
3300031770\|Ga0318521_10046837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	2213	Open in IMG/M
3300031771\|Ga0318546_10157956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1532	Open in IMG/M
3300031819\|Ga0318568_10009322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5019	Open in IMG/M
3300031821\|Ga0318567_10903761	Not Available	500	Open in IMG/M
3300031831\|Ga0318564_10280137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	738	Open in IMG/M
3300031832\|Ga0318499_10001837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5638	Open in IMG/M
3300031845\|Ga0318511_10004693	Not Available	4180	Open in IMG/M
3300031846\|Ga0318512_10587805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300031859\|Ga0318527_10003448	All Organisms → cellular organisms → Bacteria	4578	Open in IMG/M
3300031910\|Ga0306923_11374722	Not Available	745	Open in IMG/M
3300031946\|Ga0310910_10076638	Not Available	2426	Open in IMG/M
3300031946\|Ga0310910_10480751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	986	Open in IMG/M
3300032054\|Ga0318570_10159839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1010	Open in IMG/M
3300032065\|Ga0318513_10337665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300032180\|Ga0307471_102058663	Not Available	717	Open in IMG/M
3300032261\|Ga0306920_100554919	Not Available	1702	Open in IMG/M
3300033289\|Ga0310914_10599497	Not Available	993	Open in IMG/M
3300033289\|Ga0310914_11263938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	640	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.57%
Host-Associated	Host-Associated	10.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.57%
Plants	Host-Associated → Plants	10.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.00%
Loam	Environmental → Terrestrial → Soil → Loam	29.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	28.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	28.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02005560	2088090014	Soil	MTHHEHLAQVDRFIAECKNRIARQREIIASAYENGHPTVIPVSLLRVFEENLRSFEKHRQLVLDQQKNADRK
AF_2010_repII_A01DRAFT_10045572	3300000580	Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYEDGYSTDIPVSMLRVLEENLRSFERHRHLILDQLKNADRQRLARTASPSSVRN*
AF_2010_repII_A001DRAFT_100076016	3300000793	Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYEDGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASPSSVRN*
AF_2010_repII_A10DRAFT_10253922	3300000816	Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPLSMLRALEENLRSLQRHRHLILDQLKN
AP72_2010_repI_A100DRAFT_10172622	3300000837	Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYENGHPTDIPVSMLRALEENLRSFEKHRHLILNQLKTARHSRAPAAAS*
F14TB_1039098602	3300001431	Soil	MRHREHLAQADRFIAECKNRIARQREIIATAYENGHPTDIPVSMLRALEENLRSFEKHRHLILDQLKNARHSRAPAAAS*
Ga0066396_100464951	3300004267	Tropical Forest Soil	MTTREHLTQADRFISECESRITRQREIIATAYKKGQPTDIPVSMLRALEQNLRSFEKHRHLILDQLKNGPAMTGKNRIKIGL*
Ga0066397_101707511	3300004281	Tropical Forest Soil	DRFIAECKNRIARQREIIATGYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN*
Ga0062595_1004514602	3300004479	Soil	MTHREHLAQADRFIAECKSRIARQRESIATAYENGHSPDIPVSMLRALEENLRSFERHRYLILDQLKNADRQRLARTASRS*
Ga0062595_1004874732	3300004479	Soil	LGAMTHHEHLAQVDRFIAECKNRIARQREIIASAYENGHPTVIPVSLLRVFEENLRSFEKHRQLVLDQQKNADRK*
Ga0066395_100183591	3300004633	Tropical Forest Soil	GLHGSEAGGTGGLGAMTHREHLAQADRFIAECKNRIARQREIIATGYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN*
Ga0062594_1008676632	3300005093	Soil	MTHHEHLAQVDRFIAECKNRIARQREIIASAYENGHPTVIPVSLLRVFEENLRSFEKHRQLVLDQQKNADRK*
Ga0066683_105478612	3300005172	Soil	MTHHEHLAQADRYIAECKNRIARQREIIATAYENGHPTVIPVSLLRALEENLRSFEKHLQLIFDQQKNADRK*
Ga0066688_107886541	3300005178	Soil	MRHREHLAQADRFIAECKNRITRQREIIATAYENGHSPDIPVSLLRALEENVRSFERHRHLILDQLKN
Ga0066388_1000200117	3300005332	Tropical Forest Soil	MTHREHLAQADRFIAECKNRIARQRESIATAYENGHSTDILVSMLRALEENLRSFERHRYLILDQLKNADRQRLARTASRSLVRN*
Ga0066388_1000771734	3300005332	Tropical Forest Soil	MTHHEHLAQADRFIAECKNRIARQREVIATAYQNGHPTVLPVALLRVLEENLRSYEKYRHQILDEIKKAQAQQQY*
Ga0066388_1007020903	3300005332	Tropical Forest Soil	MTHHEHLAQADRFIAECKRCIERQREVIVAAYENGHPAVLPVALLRVLEVNLRSFEKYRHLILDQQKNADRK*
Ga0066388_1012466051	3300005332	Tropical Forest Soil	MTHREHLAQADRFIAECKNRIARQREIVATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNSDRQRLARTASRSSVRN
Ga0066388_1014393261	3300005332	Tropical Forest Soil	MTHHEHLAQADRSIAECKSRVERQREIIASAYENGHPTVLPVALLRVLEENLRSFEKYRQLVLDQQQNADRK*
Ga0066388_1027039452	3300005332	Tropical Forest Soil	MTHREHLAQVDRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN*
Ga0066388_1035667602	3300005332	Tropical Forest Soil	LGAMTHREYLAEADRFIAECKDRIARQRKIIATAYENGHPTVLPVALLRVLEENLRSFERYRLLILDQQKNADRK*
Ga0066388_1052307801	3300005332	Tropical Forest Soil	MTHSEHLGQADQFIAECKKRIQRQREVIATAYENGHPTILPVALLRVLEENLRSYEKYRHLILDEIKKAQAQQQQ*
Ga0066388_1059103701	3300005332	Tropical Forest Soil	MTHREHLAQADRFIAECKDRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQS
Ga0066388_1083162091	3300005332	Tropical Forest Soil	MTHRENLAEADRFIAECKDRIARQRKIIATAYENGHPTVLPVALLRVLEENLRSFEKYRLLILDQQKNADRK*
Ga0066682_105369671	3300005450	Soil	MRHREHLAQADRSIAECKNRIARQREIIATAYENGHPTDIPVSMLRALEENLRSFEKHRHLILDQLKNARHSRAPAAAS*
Ga0066905_1000678911	3300005713	Tropical Forest Soil	MTHHEHLAQANRFIAECKNRVERQREVIAAAYENGHPTVLPVALLRVLEENLRSFEKYRQLVLDQQKNANRK*
Ga0066905_1002164623	3300005713	Tropical Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYENGHPTGIPVSMLRALEENLRSFEKHRHLILNQLKTARHSRAPAAAS*
Ga0066905_1002293842	3300005713	Tropical Forest Soil	MTTREHLTQADRFISECESRIARQREIIATAYKKGQPTDIPVSMLRALEQNLRSFEKHRHLILDQLKKRAGNDW*
Ga0066905_1004636172	3300005713	Tropical Forest Soil	MTHREHLTQADRFIAECKNRIARQREIIATAYENGRPTDISVSMLRALEENLRSFEKHRHLIVDQLKKAAGQ*
Ga0066905_1006037863	3300005713	Tropical Forest Soil	AECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQQLARTASQSSVRN*
Ga0066905_1010521371	3300005713	Tropical Forest Soil	DRFIAECKNRIARQREIIATGYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADQQRLARTASQSSVRN*
Ga0066905_1015188111	3300005713	Tropical Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYEDGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQR
Ga0066905_1015970762	3300005713	Tropical Forest Soil	GAMTHNEHLGQADQFIAECKKRIQRQREVIATAYENGHPTILPVALLRVLEENLRSYEKYRHLILDEIKKAQAQQQ*
Ga0066903_1002480355	3300005764	Tropical Forest Soil	MTHNEHLGQADQFIAECKKHIQRQREVLATAYENGRPTILPVALLRVLEENLRSYEKYRHFILDEIKKAQAQQQQ*
Ga0066903_1004626123	3300005764	Tropical Forest Soil	MTHREHLAQADRFIAECKNRIARQREIVASAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNSDRQRLARTASRSSVRN*
Ga0066903_1008823562	3300005764	Tropical Forest Soil	MTHNEHLAQADRFIAECKNRVERQREIVASAYENGYPTVLPVALLRVLEANLRSFEKYRQLVLDQQKKADRK*
Ga0066903_1046327343	3300005764	Tropical Forest Soil	ARRRGRLGAMTHHEHLAEADRFIAECQRRIERQREIIASAYENGHPTVVPVSLLRALEENLRSFEKHRQLVLDQKKNADRK*
Ga0066903_1057547981	3300005764	Tropical Forest Soil	GGPGLGAMTHREHLAQADRFIAECKNRIARQREIVATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNSDRQRLARTASRSSVRN*
Ga0066903_1059009351	3300005764	Tropical Forest Soil	GGPGLGAMTHREHLAQADRFIAECKNRIARQREIVATAYGHSTDIPVSMLRALEENMRSFERHRHLILDQLKNSDRQRLARIASRSSVRN*
Ga0066903_1077718632	3300005764	Tropical Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYENGDSTDIPVSMLRALEENVRSFERHRHLILDQLKNADRQRLARTASQSSVRN*
Ga0066656_110541491	3300006034	Soil	MTHHEYLAQADRYIAECKNRIARQREIIATAYENAHPTVIPVSLLRALEENLRSFEKHRQLIFDQQKKRTGNEREQIVL
Ga0075433_116785091	3300006852	Populus Rhizosphere	MTHREHLAQADRFIAECKSRIARQRESIATAYENGHSPDIPVSMLRALEENLRSFERHRYLILDQLKN
Ga0075425_1013926132	3300006854	Populus Rhizosphere	MTHNEHLAQADRFIAECKNRVERQRQLIASAYENGHPTVLPVALLRVLEENLRSFEKYRQLVLDQTKKGQAQQQQ*
Ga0075425_1014180121	3300006854	Populus Rhizosphere	RFIAECKSRIARQRESIATAYENGHSPDIPVSMLRALEENLRSFERHRYLILDQLKNADRQRLARTASRS*
Ga0075434_1006732741	3300006871	Populus Rhizosphere	FIAECKSRIARQRESIATAYENGHSPDIPVSMLRALEENLRSFERHRYLILDQLKNADRQRLARTASRS*
Ga0075434_1009713332	3300006871	Populus Rhizosphere	MTHREHLAQADRFIAECKSRIARQRESIATAYENGHSTDILVSMLRALEENLRSFERHRYLILDQLKNADRQRLARTASPSSAPN*
Ga0075435_1007992782	3300007076	Populus Rhizosphere	MGAMTHHEHLAEADRFIAECKNRIARQREIIASAYENGHPTVIPVSLLRVFEENLRSFEKHRQLVLDQQKNADRK*
Ga0111539_106725282	3300009094	Populus Rhizosphere	VAGLIGISGWQGLHGREAGGTGGFQAMTHREHLAQADRFIAECKSRIARQRESIATAYENGHSPDIPVSMLRALEENLRSFERHRYLILDQLKNADRQRLARTASRS*
Ga0114129_126862621	3300009147	Populus Rhizosphere	VAGLTGISGRQGLHGSEAGGRGGFEEMTHREHLAQADRFIAECKSRIARQRESIATAYENGHSADIPVSMLRALEQNLRSFEKHRHLVLDQLKKAGRQ*
Ga0111538_113692961	3300009156	Populus Rhizosphere	IAECKSRIARQRESIATAYENGHSPDIPVSMLRALEENLRSFERHRYLILDQLKNADRQRLARTASRS*
Ga0126374_103328641	3300009792	Tropical Forest Soil	VIPAVSEAGGSGGLGAMTHREHLAQADRFIAECKNRIARQREIVATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNSDRQRLARTASRSSVRN*
Ga0126374_110167722	3300009792	Tropical Forest Soil	LAGLHGSEAGGTGGLGAMTHREHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN*
Ga0126374_111046131	3300009792	Tropical Forest Soil	LGWQGLHGSEAGGTEGLGAMTHREHLAQTDRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADR
Ga0126380_103005121	3300010043	Tropical Forest Soil	LAGLHGSEAGGTGGLGAMTHREHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQQLARTASQSSVRN*
Ga0126380_113565102	3300010043	Tropical Forest Soil	AQADRFIAECKNRIARQRESIATAYENGHSTDILVSMLRALEENLRSFERHRYLILDQLKNADRQRLARTASRSLVRN*
Ga0126384_107848351	3300010046	Tropical Forest Soil	LQFAVGIQQLGGRPWQELIGILGWQGLHGSEAGGRGGLGAMTHREHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRFFERHRHLILDQLKNADRQRLARTASQSSVRN*
Ga0126384_123622041	3300010046	Tropical Forest Soil	MTHREYLAEADRFIAECKNRIARQREIIAIAYENGHPTVFLVSLLRVLEENLRSFEKHRQLRTRTH*
Ga0126373_110049252	3300010048	Tropical Forest Soil	VIPAVSEAGGSGGLGAMTHREHLAQADRFIAECKNRIARQREIIATAYEDGHSTDIPVSMLRALEENLRSFERHRQVILDQLKNADRQRLARTASPSSVRN*
Ga0126373_123107521	3300010048	Tropical Forest Soil	LQFAVGIQRLGGRPWQELIGILGWQGLHGSEAGGTEGLGAMTHREHLAQTDRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN*
Ga0126370_113381102	3300010358	Tropical Forest Soil	LAGLHGSEAGGTGGLGAMTHREHLAQADRFIAECKNRIARQREIIATGYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADQQRLARTASQSSVRN*
Ga0126372_111787382	3300010360	Tropical Forest Soil	VIPAVSEAGGSGGLGAMTHREHLAQADRFIAECKNRIARQREIIATAYEDGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASPSSVRN*
Ga0126377_110229312	3300010362	Tropical Forest Soil	LAGLHGSEAGGTGGLGAMTHREHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRPLILDQLKNADRQRLARTASQSSVRN*
Ga0126379_100925081	3300010366	Tropical Forest Soil	QADRFIAECKNRIARQREIIATAYEKGHPTDIPVSMLRALEENLRSFEKHRLLILDQLKTAHHSRAPAGAS*
Ga0126381_1027853502	3300010376	Tropical Forest Soil	AECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNSDRQRLARTASRSSVRN*
Ga0124850_10005412	3300010863	Tropical Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYEDGHSTDIPVSMLRALEENLRSFERHRQVILDQLKNADRQRLARTASPSSVRN*
Ga0124850_10056652	3300010863	Tropical Forest Soil	VIPAVSEAGGSGGLGAMTHREHLAQADRFIAECKNRIARQREIIATAYEDGHSTGIPVSMLRALEENLRSFERHRLLILDQLKNADRQRLARTASPSSVRN*
Ga0124850_10121732	3300010863	Tropical Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRFFERHRHLILDQLKNADRQRLARTASQSSVRN*
Ga0137364_102949591	3300012198	Vadose Zone Soil	MRHREHLAQADRSIAECKNRIARQREIIATAYENGHSPDIPVSLLRALEENVRSFERHRHLILDQLKNADRQRLASTASRSSVRN*
Ga0137364_113416092	3300012198	Vadose Zone Soil	VTHREQLAQADRFIAECKDRIARQRAIVARAYENGHPTVLPVALLRVLEENLRSFEKYRQLVLDQIKMAQAQQQ*
Ga0137364_114027752	3300012198	Vadose Zone Soil	MTHHEHLAQADRYIAECKNRIARQREIIATAYENAHPTVIPVSLLRALEENLRSFEKHRQLIFDQQKNPDRK*
Ga0137382_102953442	3300012200	Vadose Zone Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYENGHSPDIPVSLLRALEENVRSFERHRHLILDQLKNADRQRLASTASRSSVRN*
Ga0137365_108029012	3300012201	Vadose Zone Soil	MRHREHLAQADRFIAECKSRIARQREIIATAYENGHPTDIPVSMLRALEENLRSFEKHRHLILDQLKNARHSRAPAAAS*
Ga0137381_106227462	3300012207	Vadose Zone Soil	MTHHEHLAQADRFIAECKNRIARQREIIATAYENGHSPDIPVSLLRALEENLRSFEKHRQLIFDQQKNADRK*
Ga0137376_101400704	3300012208	Vadose Zone Soil	GAMRHREHLAQADRSIAECKNRIARQREIIATAYENGHPTDIPVSMLRALEENLRSFEKHRHLILDQLKNARHSRAPAAAS*
Ga0137377_100202098	3300012211	Vadose Zone Soil	MTHHEHLAQADRYIAECKNHIARQREIIATAYENGHPTVIPVSLLRALEENLRSFESQLIFDQQKNPDRK*
Ga0126375_106937541	3300012948	Tropical Forest Soil	LQFAVGIQRLGGRPWQELIGILGWQGLHGSEAGGRGGLGAMTHRDHLAQADRFIAECENRIARQREIIATAYGNGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN*
Ga0126375_119607092	3300012948	Tropical Forest Soil	LTQADRFISECESRIARQREIIATAYKKGQPTDIPVSMLRALEQNLRSFEKHRHLILDQLKKRAGNDW*
Ga0126369_101926953	3300012971	Tropical Forest Soil	MTHREYLAQADRLIAECKDRIARQREIIASAYENGHPTVLPVSLLRVLEENLRSFEKYRLLILGQIKKAQAQQQ*
Ga0126369_113189761	3300012971	Tropical Forest Soil	MTHSEHLGQADQFIAECKKRIQRQREVIATAYENGHPTILPAALLRVLQENLRSYEKYRHLILDEIKKAQAQQQQ*
Ga0134072_104157282	3300015357	Grasslands Soil	MTHHEHLAQADRYIAECKNRIARQREIIATAYENAHPTVIPVSLLRALEENLRSFEKHRHLILDQLK
Ga0132258_123547573	3300015371	Arabidopsis Rhizosphere	GFEEMTHREHLAQADRFIAECKSRIARQRESIATAYENGHSTDIPVSMLRALEENLRSFERHRYLILDQLKNADRQRLARTASPS*
Ga0132256_1001042462	3300015372	Arabidopsis Rhizosphere	VAGLIGISGWQGLHGREAGGTGGFQAMTHREHLAQADRFIAECKSRIARQRESIATAYENGHSTDIPVSMLRALEENLRSFERHRYLILDQLKNADRQRLARTASRS*
Ga0132256_1039153241	3300015372	Arabidopsis Rhizosphere	MTHNEHLAQADRFIAECKNRVERQRQLIAFAYENGHPTVLPVALLRVLEENLRSFEKYRQLVLNQTKKGQAQQQQ*
Ga0182034_105135451	3300016371	Soil	MTHREHLAQADRLIAECKNRIARQRDIIASGYETGHRTDIPVSMLRALEENLRSFEKHRQQIVDQLKTARHSRAPAAAS
Ga0182040_105863792	3300016387	Soil	MTHRDHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADR
Ga0182037_101014765	3300016404	Soil	MTHRDHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTVSQSSV
Ga0066667_102516351	3300018433	Grasslands Soil	MTHHEHLAQADRYIAECKNRIARQREIIATAYDNGHPTVIPVSLLRALEENLRSFEKHRQLIFDQQKNPDRK
Ga0066662_103104172	3300018468	Grasslands Soil	MRHREHLAQADRSIAECKNRIARQREIIATAYENGHPTDIPVSMLRALEENLRSFEKHRHLILDQLKNARHSRAPAAAS
Ga0126371_102720112	3300021560	Tropical Forest Soil	MTTREHLTQADRFISECESRITRQREIIATAYKKGQPTDIPVSMLRALEQNLRSFEKHRHLILDQLKKRAGNDW
Ga0126371_106661992	3300021560	Tropical Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYEDGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASPSSVRN
Ga0209684_10313582	3300027527	Tropical Forest Soil	MTTREHLTQADRFISECESRITRQREIIATAYKKGQPTDIPVSMLRALEQNLRSFEKHRHLILDQLKNGPAMTGKNRIKIGL
Ga0209799_10894291	3300027654	Tropical Forest Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYENGHSKDIPVSMLRALEENLRSFERHRHLILDQLKNGPAM
Ga0318516_100010265	3300031543	Soil	MTHRDHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTVSQSSVRN
Ga0318541_103645112	3300031545	Soil	MTHREVDRFIAECKNRVARQREIIASAYENGHPTVLPVALLRVLEENLRSFEKHRQLILDQQKNADRK
Ga0318538_100947702	3300031546	Soil	MTHRDHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN
Ga0306917_104334731	3300031719	Soil	MTHRDHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLART
Ga0318521_100468374	3300031770	Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN
Ga0318546_101579563	3300031771	Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYEKGHPTDIPVSMLRALEENLRSFEKHRLLILDQLKTARHSRAPAGAS
Ga0318568_100093222	3300031819	Soil	MTHHDHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTVSQSSVRN
Ga0318567_109037611	3300031821	Soil	FIAECKKRIARQRDIIATGYETGHRTDIPVSMLRALEENLRSFEKHRQQIVDQLKTARHSRAPAAAS
Ga0318564_102801372	3300031831	Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTVSQSSVRN
Ga0318499_100018372	3300031832	Soil	MTHRDHLAQADRFIAECKNRIARQREIIATAYENGHSKDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTVSQSSVRN
Ga0318511_100046932	3300031845	Soil	AQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTVSQSSVRN
Ga0318512_105878051	3300031846	Soil	MTHREHLAQADRFIAECKNRIARQREIIATGYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN
Ga0318527_100034481	3300031859	Soil	HDHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTVSQSSVRN
Ga0306923_113747221	3300031910	Soil	MTHREVDRFIAECKNRVARQREIIASAYENGHPTVLPVALLRVLEENLRSFEKHRQLILDQQKNADR
Ga0310916_100844671	3300031942	Soil	HLGLAGLHGSEAGGTGGLGAMTHREHLAQADRFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN
Ga0310910_100766382	3300031946	Soil	RFIAECKNRIARQREIIATAYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTVSQSSVRN
Ga0310910_104807511	3300031946	Soil	FIAECKNRIARQREIIATGYENGHSTDIPVSMLRALEENLRFFERHRHLILDQLKNADRQRLARTASQSSVRN
Ga0318570_101598392	3300032054	Soil	MTHREHLAQADRFIAECKNRIARQREIIATAYENGHSKDIPVSMLRTLEENLRSFERHRHLILDQLKNADRLPISRWKP
Ga0318513_103376651	3300032065	Soil	MTHREHLAQADRFIAECKNRIARQREIIATGYENGHSTDIPVSMLRALEENLRFFERHRHLILDQLKNADRQRLARTASQSSVRN
Ga0307471_1020586632	3300032180	Hardwood Forest Soil	LAQDEEPDMRSSAAWGPVTHREQLAQADRFIAECKDRIARQRAIVARAYENGHPTVLPVALLRVLEENLRSFEKYRQLVLDQIKKVQAQQQQ
Ga0306920_1005549194	3300032261	Soil	MTPREHLAEADRLIAECKDRIARQRKIIASAYENGHPAIPVSLLRVLEENLRSFEKHRQVILDEIKKMSAA
Ga0310914_105994973	3300033289	Soil	MTHREHLAQADRFIAECKKRIARQRDIIATGYETGHRTDIPVSMLRALEENLRSFEKHRQQIVDQLKTARHSRAPAAAS
Ga0310914_112639381	3300033289	Soil	ECKNRIARQREIIATGYENGHSTDIPVSMLRALEENLRSFERHRHLILDQLKNADRQRLARTASQSSVRN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080635

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences