Metagenome Family F080582

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080582
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	54 residues
Representative Sequence	MEALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA
Number of Associated Samples	103
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.08 %
% of genes near scaffold ends (potentially truncated)	79.13 %
% of genes from short scaffolds (< 2000 bps)	79.13 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.391 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (7.826 % of family members)
Environment Ontology (ENVO)	Unclassified (26.957 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.174 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.64% β-sheet: 0.00% Coil/Unstructured: 74.36%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF04392	ABC_sub_bind	6.09
PF10851	DUF2652	4.35
PF13557	Phenol_MetA_deg	4.35
PF13414	TPR_11	3.48
PF11746	DUF3303	1.74
PF00593	TonB_dep_Rec	1.74
PF03466	LysR_substrate	1.74
PF13546	DDE_5	0.87
PF00141	peroxidase	0.87
PF13751	DDE_Tnp_1_6	0.87
PF13358	DDE_3	0.87
PF03972	MmgE_PrpD	0.87
PF11059	DUF2860	0.87
PF12697	Abhydrolase_6	0.87
PF07690	MFS_1	0.87
PF00515	TPR_1	0.87
PF00924	MS_channel	0.87
PF04738	Lant_dehydr_N	0.87
PF13460	NAD_binding_10	0.87
PF01565	FAD_binding_4	0.87
PF00656	Peptidase_C14	0.87
PF12146	Hydrolase_4	0.87
PF00872	Transposase_mut	0.87
PF03572	Peptidase_S41	0.87
PF05598	DUF772	0.87
PF13412	HTH_24	0.87
PF13432	TPR_16	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.09
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	0.87
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.87
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.87
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.87
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.87
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.39 %
Unclassified	root	N/A	22.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.39 %
Unclassified	root	N/A	22.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.39 %
Unclassified	root	N/A	22.61 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	64.35 %
Unclassified	root	N/A	22.61 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.74 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.39 %
Unclassified	root	N/A	22.61 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.74 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	54.78 %
Unclassified	root	N/A	22.61 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.74 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Stappiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae	44.35 %
Unclassified	root	N/A	22.61 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.83 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.74 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.87 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Stappia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia	44.35 %
Unclassified	root	N/A	22.61 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.83 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.74 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.87 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Stappia sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	44.35 %
Unclassified	root	N/A	22.61 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.74 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.87 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Stappia sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	44.35 %
Unclassified	root	N/A	22.61 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.74 %
unclassified Mycolicibacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → unclassified Mycolicibacterium	0.87 %
Bradyrhizobium sp. NAS96.2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS96.2	0.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Stappia sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	44.35 %
Unclassified	root	N/A	22.61 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.74 %
Mycolicibacterium sp. CBMA 361	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → unclassified Mycolicibacterium → Mycolicibacterium sp. CBMA 361	0.87 %
Bradyrhizobium sp. NAS96.2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS96.2	0.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_108243641	All Organisms → cellular organisms → Bacteria	2400	Open in IMG/M
3300002070\|JGI24750J21931_1003744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	1830	Open in IMG/M
3300002568\|C688J35102_120029247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	852	Open in IMG/M
3300004016\|Ga0058689_10123439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	571	Open in IMG/M
3300004114\|Ga0062593_101104207	Not Available	823	Open in IMG/M
3300004145\|Ga0055489_10185048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300004463\|Ga0063356_103187742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	707	Open in IMG/M
3300005093\|Ga0062594_100769824	Not Available	883	Open in IMG/M
3300005328\|Ga0070676_11288263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	558	Open in IMG/M
3300005329\|Ga0070683_101501159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	648	Open in IMG/M
3300005331\|Ga0070670_100872364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	815	Open in IMG/M
3300005332\|Ga0066388_102573350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	926	Open in IMG/M
3300005355\|Ga0070671_102078674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	506	Open in IMG/M
3300005364\|Ga0070673_100132131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	2096	Open in IMG/M
3300005365\|Ga0070688_100820127	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	729	Open in IMG/M
3300005444\|Ga0070694_100285325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1260	Open in IMG/M
3300005552\|Ga0066701_10314562	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300005577\|Ga0068857_101885224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	585	Open in IMG/M
3300005586\|Ga0066691_10336100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	894	Open in IMG/M
3300005764\|Ga0066903_107684045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	555	Open in IMG/M
3300005842\|Ga0068858_100535584	Not Available	1133	Open in IMG/M
3300006028\|Ga0070717_10646709	All Organisms → cellular organisms → Bacteria → Proteobacteria	960	Open in IMG/M
3300006086\|Ga0075019_10207816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	1160	Open in IMG/M
3300006163\|Ga0070715_10064257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1620	Open in IMG/M
3300006163\|Ga0070715_10308519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	849	Open in IMG/M
3300006163\|Ga0070715_10762233	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300006175\|Ga0070712_100603717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	929	Open in IMG/M
3300006176\|Ga0070765_100609854	All Organisms → cellular organisms → Bacteria → Proteobacteria	1029	Open in IMG/M
3300006358\|Ga0068871_102057996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	544	Open in IMG/M
3300006854\|Ga0075425_100744849	Not Available	1124	Open in IMG/M
3300006914\|Ga0075436_101012305	All Organisms → cellular organisms → Bacteria → Proteobacteria	624	Open in IMG/M
3300006969\|Ga0075419_11267189	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300009036\|Ga0105244_10151566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1110	Open in IMG/M
3300009098\|Ga0105245_11576160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	708	Open in IMG/M
3300009176\|Ga0105242_10814013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	926	Open in IMG/M
3300009553\|Ga0105249_11833733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	679	Open in IMG/M
3300009800\|Ga0105069_1045809	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300010358\|Ga0126370_11344788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	672	Open in IMG/M
3300010359\|Ga0126376_11169805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	782	Open in IMG/M
3300010361\|Ga0126378_10392153	All Organisms → cellular organisms → Bacteria	1500	Open in IMG/M
3300010366\|Ga0126379_10056680	All Organisms → cellular organisms → Bacteria	3261	Open in IMG/M
3300010397\|Ga0134124_12215549	Not Available	589	Open in IMG/M
3300010400\|Ga0134122_11386856	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	716	Open in IMG/M
3300010400\|Ga0134122_12831820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → unclassified Mycolicibacterium → Mycolicibacterium sp. CBMA 361	538	Open in IMG/M
3300012201\|Ga0137365_10067107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	2706	Open in IMG/M
3300012209\|Ga0137379_10271459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	1608	Open in IMG/M
3300012211\|Ga0137377_10036508	All Organisms → cellular organisms → Bacteria → Proteobacteria	4483	Open in IMG/M
3300012212\|Ga0150985_102771732	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300012212\|Ga0150985_111489849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	905	Open in IMG/M
3300012363\|Ga0137390_10880979	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300012955\|Ga0164298_10482958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	823	Open in IMG/M
3300013306\|Ga0163162_12038946	Not Available	658	Open in IMG/M
3300013306\|Ga0163162_13410879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	507	Open in IMG/M
3300013308\|Ga0157375_13225186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	544	Open in IMG/M
3300014969\|Ga0157376_11068323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	832	Open in IMG/M
3300015371\|Ga0132258_11893569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	1502	Open in IMG/M
3300015371\|Ga0132258_13053334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1159	Open in IMG/M
3300015372\|Ga0132256_102375551	Not Available	633	Open in IMG/M
3300016319\|Ga0182033_11908785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	540	Open in IMG/M
3300016371\|Ga0182034_11039665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS96.2	708	Open in IMG/M
3300016387\|Ga0182040_10408723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	1067	Open in IMG/M
3300017965\|Ga0190266_10548617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	686	Open in IMG/M
3300017970\|Ga0187783_10071506	Not Available	2553	Open in IMG/M
3300017974\|Ga0187777_11191879	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300018422\|Ga0190265_11275125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	852	Open in IMG/M
3300021478\|Ga0210402_11551073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	589	Open in IMG/M
3300021559\|Ga0210409_11666718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	514	Open in IMG/M
3300021560\|Ga0126371_12413339	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300021560\|Ga0126371_13053242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	567	Open in IMG/M
3300025321\|Ga0207656_10118833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	1229	Open in IMG/M
3300025898\|Ga0207692_10595536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	710	Open in IMG/M
3300025905\|Ga0207685_10249339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	858	Open in IMG/M
3300025905\|Ga0207685_10451163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	669	Open in IMG/M
3300025932\|Ga0207690_11597392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	545	Open in IMG/M
3300025944\|Ga0207661_12028530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	521	Open in IMG/M
3300026023\|Ga0207677_12096158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	526	Open in IMG/M
3300026118\|Ga0207675_101066800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	827	Open in IMG/M
3300026142\|Ga0207698_11618342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	663	Open in IMG/M
3300026333\|Ga0209158_1259585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	595	Open in IMG/M
3300028875\|Ga0307289_10340981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	617	Open in IMG/M
3300028889\|Ga0247827_10560486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	725	Open in IMG/M
3300031547\|Ga0310887_10379466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	827	Open in IMG/M
3300031573\|Ga0310915_11300342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	501	Open in IMG/M
3300031682\|Ga0318560_10429477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	715	Open in IMG/M
3300031890\|Ga0306925_10168535	All Organisms → cellular organisms → Bacteria	2359	Open in IMG/M
3300031910\|Ga0306923_10621112	All Organisms → cellular organisms → Bacteria → Proteobacteria	1211	Open in IMG/M
3300031942\|Ga0310916_10528990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	1004	Open in IMG/M
3300031942\|Ga0310916_11728006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	505	Open in IMG/M
3300031947\|Ga0310909_10447512	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300031947\|Ga0310909_11657032	Not Available	506	Open in IMG/M
3300032000\|Ga0310903_10530315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	619	Open in IMG/M
3300032013\|Ga0310906_10364457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	944	Open in IMG/M
3300032060\|Ga0318505_10614369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	511	Open in IMG/M
3300032076\|Ga0306924_11044099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	894	Open in IMG/M
3300032211\|Ga0310896_10599834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	614	Open in IMG/M
3300032261\|Ga0306920_102776483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	667	Open in IMG/M
3300032261\|Ga0306920_103511266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Stappia → Stappia sediminis	579	Open in IMG/M
3300034147\|Ga0364925_0094684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1055	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.48%
Host-Associated	Host-Associated	36.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.13%
Plants	Host-Associated → Plants	36.52%
Aquatic	Environmental → Aquatic	4.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.91%
Marine	Environmental → Aquatic → Marine	3.48%
Sediment	Environmental → Aquatic → Sediment	0.87%
Floodplain	Environmental → Terrestrial → Floodplain	0.87%
Roots	Host-Associated → Plants → Roots	0.87%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.87%
Loam	Environmental → Terrestrial → Soil → Loam	14.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.43%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.48%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.74%
Sediment	Environmental → Aquatic → Marine → Sediment	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%
Sand	Environmental → Terrestrial → Soil → Sand	0.87%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.87%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.35%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.48%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.87%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.87%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.09%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.48%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.61%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.74%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.87%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003989	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordA_D2	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022204	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025817	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1082436413	3300000956	Soil	YQLEPVGEGSTRLNFNVNWMGANLPADKKQGMMAGQATNFELFKKVCETNPA*
JGI24750J21931_10037443	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	EKVEIPEINLTLLAHYEMEALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
C688J35102_1200292471	3300002568	Soil	MEALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
Ga0055473_100043311	3300003989	Natural And Restored Wetlands	LNFNVNWMGTALPAENKQGMMDSQATNLELLKDVCENNPA*
Ga0058689_101234391	3300004016	Agave	RYSEKVEIPEIGLMLQAHYEMKPVGEGSTRLNFNINWMGANLPADKKQGMMAGQAANFELFKKVCETNPA*
Ga0062593_1011042072	3300004114	Soil	ELEALDTASTRLAFNVNWTDAKLPAENRQGLMAEQAANFERLKHVCETNPA*
Ga0055489_101850481	3300004145	Natural And Restored Wetlands	PLGEGSTRLTFNVNWLGANLPADKKQGLMAGQAANFELFKKVCETNPA*
Ga0063356_1031877421	3300004463	Arabidopsis Thaliana Rhizosphere	RALYSEKVQIPELKLTLQAHYEMEASRDGATRLRFNVHWMGADLPAEKKKGMMAGQASNFELLKNVCEQTPA*
Ga0062594_1007698242	3300005093	Soil	YSEKVEIAAINVTLFAHYELEALDTASTRLAFNVNWTDAKLPAENRQGLMAEQAANFERLKHVCETNPA*
Ga0070676_112882632	3300005328	Miscanthus Rhizosphere	EINLTLLAHYEMEALGEVSTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETKPA*
Ga0070683_1015011591	3300005329	Corn Rhizosphere	EIPEINLTLLAHYEMEALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
Ga0070670_1008723641	3300005331	Switchgrass Rhizosphere	KVEIPEIDLTLLAHYEMEALGEASTLLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
Ga0066388_1025733503	3300005332	Tropical Forest Soil	STRLNFNVNWMGANLLADKKLGMMAGQAANFELFKKVCESNPA*
Ga0070669_1004650153	3300005353	Switchgrass Rhizosphere	SSTRLKFNVNWMDSKLPPENKKGMLAGQAANFELLKKACENSPA*
Ga0070671_1020786741	3300005355	Switchgrass Rhizosphere	IAEINLTLLANYEMEAVGEVSTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKRVCETRPA*
Ga0070673_1001321311	3300005364	Switchgrass Rhizosphere	SENRARYSEKVEIAEINLTLLANYEMEAVGEVSTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKRVCETRPA*
Ga0070688_1008201271	3300005365	Switchgrass Rhizosphere	EIPEINLTLLAHYEMEAVGEASTRLNFNVNWMGAALPAEKKQGMMAGQAANFELFKRVCETRPA*
Ga0070694_1002853251	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	KVEIPEINLTLLAHYEMEALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
Ga0070662_1009512872	3300005457	Corn Rhizosphere	MEASRDGATRLRFNVHWMGADLPAEKKKGMMAGQASNFELLKNVCEQTPA*
Ga0066701_103145622	3300005552	Soil	NFNVNWMGANLPADKKQGMMAGQAANFELLKKVCETNPA*
Ga0068857_1018852241	3300005577	Corn Rhizosphere	LYSEKVQIPELKLTLQAHYEMEASRDGATRLRFNVHWMGADLPAEKKKGMMAGQASNFELLKNVCEQTPA*
Ga0066691_103361002	3300005586	Soil	MLQAHYEMEPVGEGSTRLNFNVNWMGANLPADKKQGMMAGQAANFELLKKVCGTNPA*
Ga0068866_108696901	3300005718	Miscanthus Rhizosphere	STRLKFNVNWMDSKLPPENQKGMLAGQAANFELLKKACENSPA*
Ga0066903_1076840451	3300005764	Tropical Forest Soil	TLQAHYEMEALGNASTRLNFNVNWMGSQLPAENKRGMMAGQAANFELFKRVCENNPA*
Ga0068858_1005355841	3300005842	Switchgrass Rhizosphere	AAINVTLFAHYELEALDTASTRLAFNVNWTDAKLPAENRQGLMAEQAANFERLKHVCETNPA*
Ga0068860_1021242322	3300005843	Switchgrass Rhizosphere	STRLKFNVNWMDSKLPPENKKGMLAGQAANFELLKKACENSPA*
Ga0070717_106467091	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	YSEKVEIPEINLTLLAHYEMEAVGEASTRLNFNVNWMGAALPAEKKQGMMAGQAANFELFKRVCETRPA*
Ga0066696_100952561	3300006032	Soil	MAEVEASTRLKFNVNWMDSQLPAENKRGMMAGQASNFELFKRVCEINPA*
Ga0075019_102078165	3300006086	Watersheds	RLNFNVNWMGATLPAEKKQGMMAEQAANFELFKYVCETNPA*
Ga0070715_100642571	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LTLLAHYEMEALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
Ga0070715_103085193	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	SKRLNFNVNWMGANLPADKKLGMMGGQAANFEILKKVCETNPV*
Ga0070715_107622331	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	FNVNWMGANLPADKKQGMMAGQAANFELFKKVCETNSA*
Ga0070712_1006037171	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EIGLMLQAHYEMEPVGEDSTRLKFNVNWMGANLPADKKQGMMAGQAANFELFKKVCETHPA*
Ga0070765_1006098541	3300006176	Soil	YEMEALGEASTRLNFNVNWMGAKLPAEKKQGMMAGQAANFELFKRVCETNTA*
Ga0068871_1020579962	3300006358	Miscanthus Rhizosphere	NFNVNWMGATLPAEKKQGMMAGQAANFELFKRVCETRPA*
Ga0075428_1019494121	3300006844	Populus Rhizosphere	FNVNWMDSKLPPENKKGMLAGQAANFELLKSACENNPA*
Ga0075421_1018612831	3300006845	Populus Rhizosphere	KFNVNWMDSKLPPENKKGMLAGQAANFELLKSACENNPA*
Ga0075430_1005517182	3300006846	Populus Rhizosphere	LKFNVNWMDSKLPPENKKGMLAGQAANFELLKSACENNPA*
Ga0075431_1009372552	3300006847	Populus Rhizosphere	NVNWMDSKLPPENKKGMLAGQAANFELLKSACENNPA*
Ga0075425_1007448492	3300006854	Populus Rhizosphere	ASTRLAFNVNWTDAKLPAENRQGLMAEQAANFERLKHVCETNPA*
Ga0075436_1010123051	3300006914	Populus Rhizosphere	EIKVTLQAHYEMEALNGGSTRLKFNVNWMDSKLPPENKKGMLAGQAANFELLKSACENNPA*
Ga0075419_112671891	3300006969	Populus Rhizosphere	KVTLQAHYEMEALNGGSTRLKFNVNWMDSKLPPENKKGMLAGQAANFELLKSACENNPA*
Ga0105244_101515661	3300009036	Miscanthus Rhizosphere	EINLTLLAHYEMEALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
Ga0105245_115761602	3300009098	Miscanthus Rhizosphere	AEINLTLLANYEMEAVGEVSTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKRVCETRPA*
Ga0105242_108140131	3300009176	Miscanthus Rhizosphere	NWMGATLPVEKKQGMMAGQAANFELFKRVCETNPA*
Ga0105249_118337331	3300009553	Switchgrass Rhizosphere	EKVEIPEINLTLLAHYEMEALGEASTRLNFNVNWMGATLPVEKKQGMMAGQAANFELFKRVCETNPA*
Ga0105069_10458091	3300009800	Groundwater Sand	TRLNFNVNWMGANLPADKKQGMMAGQAANFELLKKVCETNPA*
Ga0126370_113447881	3300010358	Tropical Forest Soil	EIPEIGLMLQAHYEMEPVGEGSTRLNFNVNWMGADLRADNRQGMMAGQAAHFELFKKVCETNPT*
Ga0126376_111698051	3300010359	Tropical Forest Soil	IGVMLQAHYEMEPVGEGSTRLNFNVNWMGANLQADKKLGMMAGQAANFELFKKVCETNPA
Ga0126378_103921531	3300010361	Tropical Forest Soil	EIKLTLQAHYQMEALGDRSTRLRFNVNWMGPQLPAENKKGMMAGQAANFELLKRVCENNPA*
Ga0126379_100566805	3300010366	Tropical Forest Soil	ARYSEKVEIPEIGLMLQAHYEMEPVGEGSTRLNFNVNWMGANQPADKKRGMMAGQAANFELFKKVCETNPA*
Ga0134124_122155491	3300010397	Terrestrial Soil	NVTLFAHYELEALDTASTRLAFNVNWTDAKLPAENRQGLMAEQAANFERLKHVCETNPA*
Ga0134122_113868561	3300010400	Terrestrial Soil	IPEIKVTLQAHYEMEAVNGGSTRLKFNVNWMDSKLPPENKKGMLAGQAANFELLKSACENNPA*
Ga0134122_128318202	3300010400	Terrestrial Soil	STRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETKPA*
Ga0137365_100671072	3300012201	Vadose Zone Soil	MEPVGEGSTRLNFNVNWMGANLPADKKQGMMAGQAANFELLKKVCGTNPA*
Ga0137379_102714592	3300012209	Vadose Zone Soil	MEPVGEGSTRLNFNVNWMGANLPADKKQGMMAGQAANFELFKKVCETNPA*
Ga0137377_100365084	3300012211	Vadose Zone Soil	MEPVGEGSTRLNFNVNWMGANLPADKKQGMMAGQAANFELMKKVCGTNPA*
Ga0150985_1027717321	3300012212	Avena Fatua Rhizosphere	LTLLAHYEMEALGEASTLLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
Ga0150985_1114898491	3300012212	Avena Fatua Rhizosphere	LNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
Ga0137390_108809791	3300012363	Vadose Zone Soil	LTLLAHYDMEALSEASTRLNFNVNWMGAKLPAENKQGMMAGQATNFELFKHVCETNPA*
Ga0164298_104829582	3300012955	Soil	NLTLLAHYEMKALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
Ga0126369_123727482	3300012971	Tropical Forest Soil	MEALDGGRTRLGFNVNWMGAELPAENKTGMLAGQAANFELLKRVCENNPA*
Ga0163162_120389461	3300013306	Switchgrass Rhizosphere	NVNWTDAKLPAENRQGLMAEQAANFERLKHVCETNPA*
Ga0163162_134108791	3300013306	Switchgrass Rhizosphere	ALYSEKVQIPELKLTLQAHYEMEASRDGATRLRFNVHWMGADLPAEKKKGMMAGQASNFELLKNVCEQTPA*
Ga0157375_132251862	3300013308	Miscanthus Rhizosphere	LANYEMEAVGEVSTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKRVCETRPA*
Ga0157376_110683231	3300014969	Miscanthus Rhizosphere	EINLTLLANYEMEAVGEVSTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKRVCETRPA*
Ga0132258_118935691	3300015371	Arabidopsis Rhizosphere	NLTLLAHYEMEALGEASTRLNFNVNWMGATLPVEKKQGMMAGQAANFELFKRVCETNPA*
Ga0132258_130533342	3300015371	Arabidopsis Rhizosphere	YSEKVEIPEINLTLLAHYEMEALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA*
Ga0132256_1000315915	3300015372	Arabidopsis Rhizosphere	EALNGGSTRLKFNVNWMDSKLPPENKKGMLAGQAANFELLKSACENNPA*
Ga0132256_1023755512	3300015372	Arabidopsis Rhizosphere	RLAFNVNWTDAKLPAENRQGLMAEQAANFERLKHVCETNPA*
Ga0182033_119087851	3300016319	Soil	SEKVEIPEIGLMLQAHYEMEPVGEGSTRLNFNVNWMGADLRADNRQGMMAGQAAHFELFKKVCETNPT
Ga0182034_110396652	3300016371	Soil	GLTLQAHYEMEPVGEGSTRLSFNVNWMGASLPADKKQGMMAGQAANFELFKKVCETNPA
Ga0182040_104087232	3300016387	Soil	SEKVEIPEIGLMLQAHYEMEPVGEGSTRLNFNVNWMGANLPADKKLGMMAGQAANFELFKKVCETNPA
Ga0190266_105486171	3300017965	Soil	EINMTLLAHYEMKALGEAGTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETKP
Ga0187783_100715065	3300017970	Tropical Peatland	NVNWMGADLRADNRQGMMAEQAAHFELFKKVCEINPT
Ga0187777_111918792	3300017974	Tropical Peatland	GLMLQAHYEMEPVGERGTRLSLNVNWMGADLPADKKQGMMAGQAANFELFKKVCETNPA
Ga0190265_112751252	3300018422	Soil	MNAEGREPSTRLNFNVNWLGANLPADKKLGMMAGQAANFELFKKVCETNPA
Ga0210402_115510731	3300021478	Soil	IGLMLQPHYEMEPVGEGSTRLNFNVNWMGANLPADKKQGMMAGQAANFELFKKVCETNPA
Ga0210409_116667181	3300021559	Soil	RTLLAHYEMEALGKATRLNFNVNWMGAKLPAEKKQGMMAGQAANFELFKRVCETNTA
Ga0126371_124133391	3300021560	Tropical Forest Soil	LTLQAHYQMEALGDRSTRLRFNVNWMGPQLPGENKKGMMAGQAANFELLKRVCENNPA
Ga0126371_130532421	3300021560	Tropical Forest Soil	RARYSEKVEIPEIGLMLQAHYEMEPVGERRTRLNFNVNWMGANLPADKKLGMMAGQAANFELFKKVCETNPA
Ga0224496_101615822	3300022204	Sediment	DGSTVLNFNVNWRDTVLPEENKQGMMQGQAFNLGLLKRVCEQQQA
Ga0207656_101188331	3300025321	Corn Rhizosphere	MEALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA
Ga0210144_10188632	3300025817	Natural And Restored Wetlands	LNFNVNWMGTALPAENKQGMMDSQATNLELLKDVCENNPA
Ga0207692_105955361	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	STRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA
Ga0207685_102493391	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	RSFSTRLNFNVNWMGANLPADKKLGMMGGQAANFEILKKVCETNPV
Ga0207685_104511631	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	ALGEASTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA
Ga0207660_109121011	3300025917	Corn Rhizosphere	TRLRFNVHWMGADLPAEKKKGMMAGQASNFELLKNVCEQTPA
Ga0207690_115973921	3300025932	Corn Rhizosphere	IPEINLTLLAHYEMEAVGEASTRLNFNVNWMGAALPAEKKQGMMAGQAANFELFKRVCETRPA
Ga0207709_101715741	3300025935	Miscanthus Rhizosphere	ARNGGSTRLKFNVNWMDSKLPPENQKGMLAGQAANFELLKKACENSPA
Ga0207691_100390013	3300025940	Miscanthus Rhizosphere	MEARNGGSTRLKFNVNWMDSKLPPENQKGMLAGQAANFELLKKACENSPA
Ga0207661_120285302	3300025944	Corn Rhizosphere	KVEIPEIDLTLLAHYEMEALGEASTLLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETNPA
Ga0207677_120961581	3300026023	Miscanthus Rhizosphere	LALYSEKVQIPELKLTLQAHYEMEASRDGATRLRFNVHWMGADLPAEKKKGMMAGQASNFELLKNVCEQTPA
Ga0207675_1010668002	3300026118	Switchgrass Rhizosphere	EMEALGEVSTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETKPA
Ga0207698_116183422	3300026142	Corn Rhizosphere	EALGEANTRLNFNVNWMGATLPPEKKQGMMAGQAANFELFKHVCETNPA
Ga0209158_12595851	3300026333	Soil	MLQAHYEMEPVGEGSTRLNFNVNWMGANLPADKKQGMMAGQAANFELLKKVCGTNPA
Ga0307289_103409812	3300028875	Soil	EMEALGEAGTRLNFNVNWTGATLPAEKKQGMMAGQAANFELFKHVCETNPA
Ga0247827_105604862	3300028889	Soil	MLQAHYQLEPVGEGSTRLNFNVNWMGANLPADKKQGMMAGQATNFELFKKVCETNPA
Ga0310887_103794662	3300031547	Soil	LEPVGEGSTRLNFNVNWMGANLPADKKQGMMAGQATNFELFKKV
Ga0310915_113003421	3300031573	Soil	LMLQAHYEMEPVGEGSTRLNFNVNWMGADLRADNRQGMMAGQAAHFELFKKVCETNPT
Ga0318560_104294771	3300031682	Soil	AHYEMEPVGEGSTRLNFNVNWMGASLPADKKLGMMAGQAANFELFKKVCETNPA
Ga0306925_101685351	3300031890	Soil	EIGLMLQAHYEMEPVGEGSTRLNFNVNWMGASLPADKKLGMMAGQAANFELFKKVCATNP
Ga0306923_106211122	3300031910	Soil	NVNWMGANLPADKKLGLMAGQAANFELFKKVCETNPA
Ga0310916_105289901	3300031942	Soil	GSTRLSFNVNWMGASLPADKKQGMMAGQAANFELFKKVCETNPA
Ga0310916_117280062	3300031942	Soil	HYEMEPVGEGSTRLNFNVNWMGASLPADKKLGMMAGQAANFELFKKVCATNPA
Ga0310909_104475123	3300031947	Soil	MEPVGEGSTRLNFNVNWMGASLPADKKLGMMAGQAANFELFKKVCETNPA
Ga0310909_116570321	3300031947	Soil	FNVNWMGANLPADKKLGMMAGQAANFELFKKVCETNPA
Ga0310903_105303152	3300032000	Soil	EIAEINLTLLAHYEMEALGEVSTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETKPA
Ga0310906_103644572	3300032013	Soil	AHYEMEALGEASTRLNFNVNWMGATLPVEKKQGMMAGQAANFELFKHVCETNPA
Ga0318505_106143691	3300032060	Soil	YSEKVEIPEIGLMLQAHYEMEPVGEGSTRLNFNVNWMGANLPADKKLGMMAGQAANFELFKKVCETNPA
Ga0306924_110440991	3300032076	Soil	RARYSEKVEIPEIGLMLQAHYEMEPVGEGSTRLNFNVNWMGASLPADKKLGMMAGQAANFELFKKVCATNPA
Ga0310896_105998342	3300032211	Soil	IAEINLTLLAHYEMEALGEVSTRLNFNVNWMGATLPAEKKQGMMAGQAANFELFKHVCETKPA
Ga0306920_1027764831	3300032261	Soil	EMEPVGEGSTRLNFNVNWMGADLRADNRQGMMAGQAAHFELFKKVCETNPT
Ga0306920_1035112661	3300032261	Soil	QAHYEMEPVGEGSTRLNFNVNWMGADLRADNRQGMMDGQAAHFELFKKVCETNPS
Ga0364925_0094684_5_157	3300034147	Sediment	LEPVGEGSTRLNFNVNWMGANLPADKKQGMMAGQATNFELFKKVCETNPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080582

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences