Metagenome / Metatranscriptome Family F080566

Basic Information
Family ID	F080566
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	44 residues
Representative Sequence	MRRQPRSGKRHVLRWVAVAAVVIVAAGTLTAYLKYRAVYDSITR
Number of Associated Samples	108
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.17 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Bacteria (61.739 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.565 % of family members)
Environment Ontology (ENVO)	Unclassified (23.478 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.478 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.39% β-sheet: 0.00% Coil/Unstructured: 48.61%
Feature Viewer

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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13307	Helicase_C_2	89.57
PF04978	DUF664	0.87
PF03109	ABC1	0.87
PF00578	AhpC-TSA	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	26.09 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4.35 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.87 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	26.09 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.87 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.87 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	26.09 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.87 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.87 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	26.09 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.87 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.87 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	26.09 %
Pseudonocardia sp. Ae356_Ps1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. Ae356_Ps1	0.87 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.87 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10418166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	546	Open in IMG/M
3300004082\|Ga0062384_100516344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	794	Open in IMG/M
3300004082\|Ga0062384_101264453	Not Available	539	Open in IMG/M
3300004092\|Ga0062389_103602640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	581	Open in IMG/M
3300004152\|Ga0062386_101370332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	589	Open in IMG/M
3300005434\|Ga0070709_11493490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300005435\|Ga0070714_102399493	Not Available	512	Open in IMG/M
3300005436\|Ga0070713_102130607	Not Available	543	Open in IMG/M
3300005450\|Ga0066682_10068598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	2184	Open in IMG/M
3300005538\|Ga0070731_10487612	Not Available	820	Open in IMG/M
3300005543\|Ga0070672_100020134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4862	Open in IMG/M
3300005544\|Ga0070686_100913427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	715	Open in IMG/M
3300005545\|Ga0070695_101798633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	514	Open in IMG/M
3300005560\|Ga0066670_10858296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	551	Open in IMG/M
3300006028\|Ga0070717_10720584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	906	Open in IMG/M
3300006032\|Ga0066696_10218763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1222	Open in IMG/M
3300006102\|Ga0075015_100327009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	849	Open in IMG/M
3300006163\|Ga0070715_10262522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	908	Open in IMG/M
3300006176\|Ga0070765_100140543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2143	Open in IMG/M
3300006796\|Ga0066665_11547902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	519	Open in IMG/M
3300006954\|Ga0079219_10243101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1063	Open in IMG/M
3300009089\|Ga0099828_10998832	Not Available	746	Open in IMG/M
3300009093\|Ga0105240_12367830	Not Available	550	Open in IMG/M
3300009524\|Ga0116225_1449864	Not Available	572	Open in IMG/M
3300009628\|Ga0116125_1131209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	685	Open in IMG/M
3300010043\|Ga0126380_12120043	Not Available	518	Open in IMG/M
3300010321\|Ga0134067_10201352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	732	Open in IMG/M
3300010379\|Ga0136449_102179811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	809	Open in IMG/M
3300010876\|Ga0126361_10978586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1130	Open in IMG/M
3300012210\|Ga0137378_11387374	Not Available	616	Open in IMG/M
3300012491\|Ga0157329_1010630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	724	Open in IMG/M
3300016294\|Ga0182041_11685632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	586	Open in IMG/M
3300016357\|Ga0182032_11342638	Not Available	618	Open in IMG/M
3300017928\|Ga0187806_1025543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1732	Open in IMG/M
3300017939\|Ga0187775_10475254	Not Available	530	Open in IMG/M
3300017942\|Ga0187808_10456405	Not Available	589	Open in IMG/M
3300017955\|Ga0187817_10735445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	629	Open in IMG/M
3300017959\|Ga0187779_11084268	Not Available	559	Open in IMG/M
3300017972\|Ga0187781_11024405	Not Available	604	Open in IMG/M
3300017975\|Ga0187782_11220167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	589	Open in IMG/M
3300018085\|Ga0187772_10989227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	614	Open in IMG/M
3300019885\|Ga0193747_1115807	Not Available	639	Open in IMG/M
3300020062\|Ga0193724_1024507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1286	Open in IMG/M
3300020582\|Ga0210395_10310297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1186	Open in IMG/M
3300020582\|Ga0210395_11325828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	526	Open in IMG/M
3300021088\|Ga0210404_10760598	Not Available	553	Open in IMG/M
3300021180\|Ga0210396_10431990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1156	Open in IMG/M
3300021180\|Ga0210396_10849359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	781	Open in IMG/M
3300021384\|Ga0213876_10550639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	614	Open in IMG/M
3300021401\|Ga0210393_10057879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	3050	Open in IMG/M
3300021404\|Ga0210389_11396144	Not Available	534	Open in IMG/M
3300021405\|Ga0210387_11628052	Not Available	549	Open in IMG/M
3300021479\|Ga0210410_11080050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	692	Open in IMG/M
3300021860\|Ga0213851_1360493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1090	Open in IMG/M
3300025482\|Ga0208715_1017936	Not Available	1374	Open in IMG/M
3300025906\|Ga0207699_10155270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1518	Open in IMG/M
3300025941\|Ga0207711_10633925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	997	Open in IMG/M
3300026374\|Ga0257146_1080838	Not Available	530	Open in IMG/M
3300026498\|Ga0257156_1139724	Not Available	505	Open in IMG/M
3300027110\|Ga0208488_1011764	Not Available	1756	Open in IMG/M
3300027307\|Ga0209327_1019627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	898	Open in IMG/M
3300027545\|Ga0209008_1054036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	913	Open in IMG/M
3300027648\|Ga0209420_1046029	Not Available	1321	Open in IMG/M
3300027692\|Ga0209530_1035568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1478	Open in IMG/M
3300027783\|Ga0209448_10193309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	675	Open in IMG/M
3300027903\|Ga0209488_10707179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	721	Open in IMG/M
3300027905\|Ga0209415_10538661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	885	Open in IMG/M
3300028065\|Ga0247685_1012013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1031	Open in IMG/M
3300028789\|Ga0302232_10053478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2136	Open in IMG/M
3300028906\|Ga0308309_10919876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	759	Open in IMG/M
3300030057\|Ga0302176_10456163	Not Available	516	Open in IMG/M
3300030503\|Ga0311370_10249661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	2340	Open in IMG/M
3300030520\|Ga0311372_11939872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	694	Open in IMG/M
3300030520\|Ga0311372_12985215	Not Available	512	Open in IMG/M
3300030618\|Ga0311354_10813046	Not Available	881	Open in IMG/M
3300031545\|Ga0318541_10785965	Not Available	531	Open in IMG/M
3300031549\|Ga0318571_10104149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	932	Open in IMG/M
3300031564\|Ga0318573_10402689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	735	Open in IMG/M
3300031713\|Ga0318496_10169898	Not Available	1194	Open in IMG/M
3300031719\|Ga0306917_10378388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1103	Open in IMG/M
3300031720\|Ga0307469_10089539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	2119	Open in IMG/M
3300031723\|Ga0318493_10590359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	618	Open in IMG/M
3300031754\|Ga0307475_10795975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	750	Open in IMG/M
3300031765\|Ga0318554_10810135	Not Available	523	Open in IMG/M
3300031769\|Ga0318526_10457675	Not Available	521	Open in IMG/M
3300031770\|Ga0318521_10385072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	834	Open in IMG/M
3300031771\|Ga0318546_11074138	Not Available	566	Open in IMG/M
3300031777\|Ga0318543_10516169	Not Available	535	Open in IMG/M
3300031781\|Ga0318547_10492036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	757	Open in IMG/M
3300031805\|Ga0318497_10562328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300031820\|Ga0307473_10843925	Not Available	657	Open in IMG/M
3300031823\|Ga0307478_11712976	Not Available	518	Open in IMG/M
3300031845\|Ga0318511_10554326	Not Available	534	Open in IMG/M
3300031879\|Ga0306919_10171170	Not Available	1598	Open in IMG/M
3300031879\|Ga0306919_10572919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	871	Open in IMG/M
3300031938\|Ga0308175_103186256	Not Available	509	Open in IMG/M
3300031962\|Ga0307479_10138271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. Ae356_Ps1	2385	Open in IMG/M
3300031996\|Ga0308176_11194805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	806	Open in IMG/M
3300032008\|Ga0318562_10546841	Not Available	670	Open in IMG/M
3300032025\|Ga0318507_10070636	Not Available	1415	Open in IMG/M
3300032039\|Ga0318559_10305305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	739	Open in IMG/M
3300032044\|Ga0318558_10444463	Not Available	646	Open in IMG/M
3300032091\|Ga0318577_10214711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	921	Open in IMG/M
3300032091\|Ga0318577_10242832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	862	Open in IMG/M
3300032782\|Ga0335082_10980454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	709	Open in IMG/M
3300032828\|Ga0335080_11442191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	683	Open in IMG/M
3300032892\|Ga0335081_12188168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	583	Open in IMG/M
3300032896\|Ga0335075_10684839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	990	Open in IMG/M
3300032954\|Ga0335083_10876058	Not Available	714	Open in IMG/M
3300033134\|Ga0335073_10638131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1180	Open in IMG/M
3300033158\|Ga0335077_11648997	Not Available	608	Open in IMG/M
3300033289\|Ga0310914_10156774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2012	Open in IMG/M
3300033289\|Ga0310914_11778721	Not Available	520	Open in IMG/M
3300033290\|Ga0318519_10850472	Not Available	562	Open in IMG/M
3300034199\|Ga0370514_168864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.65%
Host-Associated	Host-Associated	4.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.09%
Aquatic	Environmental → Aquatic	9.57%
Plants	Host-Associated → Plants	4.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.87%
Freshwater	Environmental → Aquatic → Freshwater	8.70%
Peat	Environmental → Terrestrial → Peat	5.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.61%
Sediment	Environmental → Aquatic → Sediment	0.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.87%
Roots	Host-Associated → Plants → Roots	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.65%
Loam	Environmental → Terrestrial → Soil → Loam	13.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.30%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.74%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.22%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.87%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.57%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.22%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.22%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.22%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.35%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.35%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.61%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.74%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.87%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.87%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.87%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.87%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.87%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012491	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027307	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028065	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK26	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080566

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_104181662	3300001867	Forest Soil	MPPTRGTAPRAGKRHVLRWVAVAAVVILAAGTLVAYVKYREVYDSITRV
Ga0062384_1005163442	3300004082	Bog Forest Soil	MRERPRTGKRHVLRWVAVAAVVIVAAGTLTAYLKYRAVYDS
Ga0062384_1012644531	3300004082	Bog Forest Soil	MPRRPREGKRHVLRWVAVGAVVILAAGTLTAYLKYRAVYDS
Ga0062389_1036026401	3300004092	Bog Forest Soil	MRRGPGAGKRHILRWVAVGTVVILAAGTLAGYLKYRAVYDSITRVSI
Ga0062386_1013703321	3300004152	Bog Forest Soil	MRRQPRSGKRHVLRWVAVAAVVIVAAGTLTAYLKYRAVYDSITRVT
Ga0070709_114934902	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRSQPRSGKRRHVLRWVAVAAVVVVAGGTLVAYLKYRAVYDSI
Ga0070714_1023994931	3300005435	Agricultural Soil	MRSQPRSGKRHHVLRWVAVAAVVVVAGGTLVAYLKYRAVYDSITRVTVPSTALGH
Ga0070713_1021306071	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRSQPRSGKRRHVLRWVAVAAVVVVAGGTLVAYLKYRAVYDSITRVTVPSTALGH
Ga0066682_100685981	3300005450	Soil	MRSQPRSGKRRHVLRWVAVAAVVVVAAGTLGAYLKYRAVYDSIT
Ga0070731_104876121	3300005538	Surface Soil	MRRRQRVRSEPPSGKRHILRWVAIASVVLLAAGTLTAYLKYRAVYDSI
Ga0070672_1000201341	3300005543	Miscanthus Rhizosphere	MRSQPRSGKRRHVLRWVAVAAVVVVAGGTLVAYLKYR
Ga0070686_1009134272	3300005544	Switchgrass Rhizosphere	MRRQPRSGKRHVLRWVAVAAVVVVAGGTLGAYLKYRAVYDSIT
Ga0070695_1017986331	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRRQPRSGKRHILRWVAVAAVVVVAGGTLGAYLKYRAVYDSITRVTVPS
Ga0066670_108582961	3300005560	Soil	MRRQPHSGGKRHVLRWVAVAAVVIVAAGTLGVYLKYR
Ga0070717_107205841	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRRQPHSGGKRHVLRWVAVAAVVIVAAGTLGVYLKYRAVFDSITR
Ga0066696_102187632	3300006032	Soil	MRRQPQSGKRHVLRWVAVAAVVIVAAGTLGAYLKY
Ga0075015_1003270091	3300006102	Watersheds	MRTQPRSRKRHVLRWVAVAAVVIVAAGTLTAYLKYRA
Ga0070715_102625222	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYDSITR
Ga0070765_1001405432	3300006176	Soil	MRRRPREGKRHILRWVAVAAVVILSAGTLTAYLKYRQIYDSITRVQVPGAELGQR
Ga0066665_115479021	3300006796	Soil	MRRQPQSGKRHVLRWVAVAAVVIVAAGTLGAYLKYRAVYDSITR
Ga0079219_102431012	3300006954	Agricultural Soil	MRRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYDSITR
Ga0099828_109988321	3300009089	Vadose Zone Soil	MRRQPRSGKRHVLRWVAVGAVAIVAAGTLGAYLKYRAVYDSITRVTV
Ga0105240_123678301	3300009093	Corn Rhizosphere	MRSQPRSGKRRHVLRWVAVAAVVVVAGGTLVAYLKYRA
Ga0116225_14498641	3300009524	Peatlands Soil	MRTQPRSGKRHVLRWVAVAAVVIVAGGTLTAYLKYRAVYDSITRVT
Ga0116125_11312091	3300009628	Peatland	MRERPRTGKRHVLRWVAVAAVIIVGAGTLTAYLKYRA
Ga0126380_121200432	3300010043	Tropical Forest Soil	MRRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYDSITRV
Ga0134067_102013522	3300010321	Grasslands Soil	MRRQPQSGKRHVLRWVAVAAVVIVAAGTLGAYLKYRAVYDSITRVTV
Ga0136449_1021798111	3300010379	Peatlands Soil	MRRQPRSGKRHVLRWVAVAAVVIVAAGTLTAYLKYRAVYDSITR
Ga0126361_109785862	3300010876	Boreal Forest Soil	MRRGPRDGKRHILRWVAVAAVVILGAGTLSAYLKYRAVYDSITRVNPGGELGVRPT
Ga0137378_113873742	3300012210	Vadose Zone Soil	MRRQPQSGKRHVLRWVAVAAVVIVAAGTLGAYLKYRAVYDSIT
Ga0157329_10106301	3300012491	Arabidopsis Rhizosphere	MRSQPRSGKRRHVLRWVAVAAVVIVAGGTLVAYLKYRAV
Ga0182041_116856322	3300016294	Soil	MRRQPPRGKRHVLRWVAVAAVVIVAAGTLGAYLKYRAVY
Ga0182032_113426382	3300016357	Soil	MRAPAPHEGKKRHVLRWVAVAAVVILAAGTLTVYLKYRAIYDSIT
Ga0187806_10255432	3300017928	Freshwater Sediment	MPRRPRTGKRHVLRWVATAVVVILGAGTLAAYLKYRAVYDSITRVVVPSTELGHRP
Ga0187775_104752541	3300017939	Tropical Peatland	MPRRPRTGQRHVLRWVAAAVVAILAAGTLAVYLKYR
Ga0187808_104564051	3300017942	Freshwater Sediment	MPRRPRTGKRHVLRWVAVAVVVVLSAGTLAAYLKYRAVYDSITRVPVPSTEL
Ga0187817_107354451	3300017955	Freshwater Sediment	MRRQPRSGKRHVLRWVAVAAVVIVAAGTLTAYLKY
Ga0187779_110842682	3300017959	Tropical Peatland	MRRQPRRGRRHVLRWVAVGAVVIVAAGTLGAYLKYRAIYD
Ga0187781_110244051	3300017972	Tropical Peatland	MRRAPRGGRRHILRWVAVGAVAILAAGTLTAYLKYRAIYDSI
Ga0187782_112201671	3300017975	Tropical Peatland	MQPSRSRAPRESKRHVLRWVAVGAAVILVGATLAGYLKYRAVYD
Ga0187772_109892271	3300018085	Tropical Peatland	MPRRPRTGKRHVLRWVATAVVVILGAGTLAAYLKYRAVYDSITRVAVPSTELGH
Ga0193747_11158071	3300019885	Soil	MRSQPRSGKRRHVLRWVAVAAVVVVAGGTLVAYLKYRAVYDSITRV
Ga0193724_10245072	3300020062	Soil	MRRQPRGGKRRHVLRWVAVAAVVVVAGGTLGAYLKYRAVYDSITRVTV
Ga0210395_103102971	3300020582	Soil	MRRQPRSGKRHVLRWVAVAAVVVVAGGTLGAYLKYRAVYDSITR
Ga0210395_113258281	3300020582	Soil	MPSTPRTGKRHVLRWVAVAAVIVVAAGTLTAYLKYRAVYNSITRV
Ga0210404_107605982	3300021088	Soil	MRRQPRSGKRHILRWVAVAAVVIVAGGTLGAYLKYR
Ga0210396_104319901	3300021180	Soil	MRRQPRSGKRHVLRWVAAGAVVVVTAGTLAAYLKY
Ga0210396_108493591	3300021180	Soil	MRRQPRSGKRHVLRWVAVTAVVIVAAGTLTAYLKYRAV
Ga0213876_105506392	3300021384	Plant Roots	MRRQPHSGGKRHVLRWVAVAAVVIVAAGTLGAYLKYRAVYDSITRVTVPSTALGHR
Ga0210393_100578791	3300021401	Soil	MRSGPRQGKRHILRWVAVAAVVILGAGTLSAYLKYRAVYDSIT
Ga0210389_113961442	3300021404	Soil	MRPTTGGAPREGKRHVLRWVAVGAVVILAAGTLAAYLKYRAV
Ga0210387_116280522	3300021405	Soil	MRRQPRSRKRHVLRWVAAGAVVVVTAGTLAAYLRYRA
Ga0210410_110800502	3300021479	Soil	MRRQPRSGKRHVLRWVAVAAVVVVAGGTLGAYLKYRA
Ga0213851_13604932	3300021860	Watersheds	MRRQPRRGKRHVLRWVAVAAVVIVTAGTLTAYLKYRAVYDSITRV
Ga0208715_10179364	3300025482	Arctic Peat Soil	MRRQPRSGKRHVLRWAAVAAVAIVTVGTLGAYLKYRAVYDSITRVA
Ga0207699_101552702	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MRSQPRSGKRRHVLRWVAVAAVVVVAGGTLVAYLKYRAVYD
Ga0207711_106339252	3300025941	Switchgrass Rhizosphere	MRSQPRSGKRRHVLRWVAVAAVVVVAGGTLVAYLKYRAVYDSIT
Ga0257146_10808382	3300026374	Soil	MRSEPRSGKRHVLRWVAVAAVVIVAGGTLGAYLKYRAVYDSIIRVA
Ga0257156_11397242	3300026498	Soil	MRRQPRSGKRHVLRWVAVAAVVVVAGGTLGAYLKYRAVYDSITRVTV
Ga0208488_10117641	3300027110	Forest Soil	MRERPRTGKRHVLRWVAVAAVIIVGAGTLTAYLKYRAVYDS
Ga0209327_10196272	3300027307	Forest Soil	MRKRPREGKRHVLRWVAVGAVVILAAGTLAGYLKYRAVYDSITRVSVP
Ga0209008_10540361	3300027545	Forest Soil	MRPTRRRAPREGKRHVLRWVAVATVVILAAGTLAAYLKYRAVYDSIT
Ga0209420_10460291	3300027648	Forest Soil	MRGRPREGKKRHVLRWVAVAAVVILSAGTLTAYLKYREI
Ga0209530_10355682	3300027692	Forest Soil	MRERPRTGKRHVLRWVAVAAVIIVGAGTLTAYLKYRAVYD
Ga0209448_101933092	3300027783	Bog Forest Soil	MRAAPRERKRHVLRWFAVGAVVILAAGTLAGYLKYRAVYDS
Ga0209488_107071791	3300027903	Vadose Zone Soil	MRSEPRSGKRHVLRWVAVAAVVIVAGGTLGAYLKYRAVYDSITRVA
Ga0209415_105386612	3300027905	Peatlands Soil	MRRRQHVRIRPPSGQRHILRWVAIAAVVLLAAGTLTAYLKYRAVYDSITRVTVNPGELGH
Ga0247685_10120132	3300028065	Soil	MRSQPRSGKRRHVLRWVAVAAVVVVAGGTLVAYLKYRAVYDSITRVAVP
Ga0302232_100534781	3300028789	Palsa	MRERPRTGKRHVLRWVAVAAVVIVVAGTLTAYLKYRAVYDSI
Ga0308309_109198762	3300028906	Soil	MRPTRGGAPREGKRHVLRWIAVAAVVILASGTLAAYLKYRAVYDSITRVTVPGSEPGKR
Ga0302176_104561631	3300030057	Palsa	MRKRPRTGKRHVLRWVAVAAVIIVGAGTLTAYLKYRAVYD
Ga0311370_102496612	3300030503	Palsa	MRERPRTGKRHVLRWVAVAAVVIVVAGTLTAYLKYRAVYDSITR
Ga0311372_119398721	3300030520	Palsa	MRRGPGAGKRHILRWVAVGTVVILAAGTLAGYLKYRAVYDSITRV
Ga0311372_129852152	3300030520	Palsa	MRERPRTGKRHVLRWVAVAAVIIVGAGTLTAYLKYRAVYDSITRVT
Ga0311354_108130462	3300030618	Palsa	MRERPRTGKRRVLRWVAVAVVVIVGAGTLTAYLKYRAVYD
Ga0318541_107859652	3300031545	Soil	MGRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYDSITRVAVPTT
Ga0318571_101041492	3300031549	Soil	MRAAAPREGKKRHVLRWVAVAAVVILAAGTLTVYLKYRAIYDS
Ga0318573_104026891	3300031564	Soil	MRAAAPREGKKRHVLRWVAVAAVVILAAGTLTVYLKYRAIYDSIT
Ga0318496_101698981	3300031713	Soil	MPTAAPREGKKRHVLRWVAVAAVVILAAGTLTVYLKYRAIYDSIT
Ga0306917_103783882	3300031719	Soil	MRRQPQSGKRHVLRWVAVAAVVIVAAATLGAYLKYRAVYD
Ga0307469_100895391	3300031720	Hardwood Forest Soil	MRSQPRSGKRRHVLRWVAVAVVVVVAGGTLVAYLKYRA
Ga0318493_105903592	3300031723	Soil	MRRRPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYDSITRV
Ga0307475_107959752	3300031754	Hardwood Forest Soil	MPPTRGTAPRAGKRHVLRWVAVAAVVILAAGTLAAYVKYREVYD
Ga0318554_108101351	3300031765	Soil	MRPTRGTAPRAGKRHVLRWVAVAAVVILAAGTLVAYVKYREVYDSITRV
Ga0318526_104576751	3300031769	Soil	MRRQPQSGKRHVLRWVAVAAVVIVAAATLGAYLKYRAVYDSIT
Ga0318521_103850722	3300031770	Soil	MGRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYDSITRVAVPTTALGH
Ga0318546_110741381	3300031771	Soil	MPRRPRTGKRHVLRWVATAVVVILTAGTLAAYMKYRAVYD
Ga0318543_105161692	3300031777	Soil	MGRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYDSITRVAVPTTALG
Ga0318547_104920362	3300031781	Soil	MRRQPPRGKRHVLRWVAVAAVVIVTAGTLGVYLKYRAIYD
Ga0318497_105623282	3300031805	Soil	MGRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYDSITRVAVPTTAL
Ga0307473_108439252	3300031820	Hardwood Forest Soil	MRRQPRSGKRHILRWVAVAAVVIVAAGTLGAYLKY
Ga0307478_117129761	3300031823	Hardwood Forest Soil	MPPTTGKAPREGKRHVLRWVAVAAVVILAAGTLAAYLKYRAVYDSITRVTVPGSELGQ
Ga0318511_105543261	3300031845	Soil	MRRQPRSGKRHVLRWVAVGAVVVVAAGTLGAYLKYRAVYDSIT
Ga0306919_101711701	3300031879	Soil	MRRRPRTGKRHVLRWVATAVVVILGAGTLAVYLKYRAVYDS
Ga0306919_105729192	3300031879	Soil	MGRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYDSITRVAV
Ga0308175_1031862562	3300031938	Soil	MRRQPHSGGKRHVLRWVAVAAVVIVAAGTLGVYLKYRAVYDSITRVTV
Ga0307479_101382712	3300031962	Hardwood Forest Soil	MRPTTGGAPREGKRHVLRWVAVGVVVILAAGTLAAYLKYRAVYDSIT
Ga0308176_111948051	3300031996	Soil	MRRQPHSGGKRHVLRWVAVAAVVIVAAGTLGVYLKYRAVFDSITRVTVPSTALGH
Ga0318562_105468412	3300032008	Soil	MRRQPRSGKRHVLRWVAVGAVVIVAAGTLTGYLKYRAVLDS
Ga0318507_100706362	3300032025	Soil	MPTAAPREGKKRHVLRWVAVAAVVILAAGTLTVYLKYR
Ga0318559_103053051	3300032039	Soil	MRPTTGRAPREGKRRHVLRWVAVGAVVILAAGTLTVYLKYRAIYDS
Ga0318558_104444632	3300032044	Soil	MGRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYD
Ga0318577_102147112	3300032091	Soil	MRRQPRSDKRHVLRWVAVGAVVIVAAGTLAAYLKYRAIYDSIT
Ga0318577_102428321	3300032091	Soil	MRAAAPREGKKRHVLRWVAVAAVVILAAGTLTVYLK
Ga0335082_109804541	3300032782	Soil	MRRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAV
Ga0335080_114421912	3300032828	Soil	MRRRPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYR
Ga0335081_121881682	3300032892	Soil	MRRQPHSGGKRHVLRWVAVAAVVIVAAGTLGVYLKYRAVFDSITRVT
Ga0335075_106848391	3300032896	Soil	MRPTRGRTPREGKRHVLRWVAVGAVVILAASTLAAYLKYRAVYD
Ga0335083_108760582	3300032954	Soil	MRSQPRSGKRRHVLRWVAVAAVVVVAGGTLGAYLKYRAVYDSITRVTVPSTALGHR
Ga0335073_106381311	3300033134	Soil	MRRQPPRGKRHVLRWVAVAAVVIVTAGTLAVYVKYREI
Ga0335077_116489971	3300033158	Soil	MRRQPPRGKRHVLRWVAVAAVVIVTAGTLGVYLKY
Ga0310914_101567742	3300033289	Soil	MPRRPRTGKRHVLRWVATGVVVILAAGTLTAYLKYRAVY
Ga0310914_117787212	3300033289	Soil	MGRQPRSGKRHVLRWVAVGAVVIVAAGTLGAYLKYRAVYDSITRVA
Ga0318519_108504722	3300033290	Soil	MRTAAPHEGKKKRHVLRWVAVAAVVILAAGTLTVYLKYRA
Ga0370514_168864_451_564	3300034199	Untreated Peat Soil	MQERPRTGKRHVLRWVAVAVVVIVAAGTLTAYLKYRAV

Hidden Markov Model


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