Metagenome Family F080411

Basic Information
Family ID	F080411
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	47 residues
Representative Sequence	RLNFYSKVRWRVPIDPTKHYFDSRFEIKTTVHKQAEWREKLAAAR
Number of Associated Samples	100
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.22 %
% of genes near scaffold ends (potentially truncated)	73.04 %
% of genes from short scaffolds (< 2000 bps)	90.43 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (96.522 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.043 % of family members)
Environment Ontology (ENVO)	Unclassified (43.478 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.565 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.22% β-sheet: 0.00% Coil/Unstructured: 57.78%
Feature Viewer

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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01522	Polysacc_deac_1	24.35
PF08241	Methyltransf_11	13.04
PF04828	GFA	13.04
PF07690	MFS_1	6.96
PF09084	NMT1	2.61
PF13489	Methyltransf_23	2.61
PF01850	PIN	0.87
PF03783	CsgG	0.87
PF01613	Flavin_Reduct	0.87
PF00037	Fer4	0.87
PF13343	SBP_bac_6	0.87
PF01797	Y1_Tnp	0.87
PF05016	ParE_toxin	0.87
PF04909	Amidohydro_2	0.87
PF04014	MazE_antitoxin	0.87
PF13416	SBP_bac_8	0.87
PF04255	DUF433	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	24.35
COG3791	Uncharacterized conserved protein	Function unknown [S]	13.04
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.61
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.61
COG1462	Curli biogenesis system outer membrane secretion channel CsgG	Cell wall/membrane/envelope biogenesis [M]	0.87
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.87
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.87
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.52 %
Unclassified	root	N/A	3.48 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.52 %
Unclassified	root	N/A	3.48 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.52 %
Unclassified	root	N/A	3.48 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.30 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	10.43 %
Unclassified	root	N/A	3.48 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	23.48 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.43 %
Unclassified	root	N/A	3.48 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	23.48 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	7.83 %
Unclassified	root	N/A	3.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	7.83 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.48 %
Unclassified	root	N/A	3.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	7.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.48 %
Unclassified	root	N/A	3.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.61 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_11290408	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300000789\|JGI1027J11758_13032976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	779	Open in IMG/M
3300000955\|JGI1027J12803_101985951	Not Available	583	Open in IMG/M
3300004114\|Ga0062593_100801083	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300004463\|Ga0063356_102040432	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	869	Open in IMG/M
3300005177\|Ga0066690_10366687	All Organisms → cellular organisms → Bacteria → Proteobacteria	977	Open in IMG/M
3300005178\|Ga0066688_10349522	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	957	Open in IMG/M
3300005289\|Ga0065704_10824864	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	517	Open in IMG/M
3300005439\|Ga0070711_101160740	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	667	Open in IMG/M
3300005439\|Ga0070711_101901730	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005536\|Ga0070697_100892232	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	789	Open in IMG/M
3300005536\|Ga0070697_101077161	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	715	Open in IMG/M
3300005545\|Ga0070695_100902171	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	714	Open in IMG/M
3300005553\|Ga0066695_10774130	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005617\|Ga0068859_102745895	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300005836\|Ga0074470_11771254	All Organisms → cellular organisms → Bacteria	3465	Open in IMG/M
3300005843\|Ga0068860_100762457	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300006173\|Ga0070716_100394047	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	994	Open in IMG/M
3300006804\|Ga0079221_10095761	All Organisms → cellular organisms → Bacteria	1446	Open in IMG/M
3300006852\|Ga0075433_10429633	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1165	Open in IMG/M
3300006852\|Ga0075433_11014491	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	723	Open in IMG/M
3300006854\|Ga0075425_100205973	All Organisms → cellular organisms → Bacteria → Proteobacteria	2261	Open in IMG/M
3300006871\|Ga0075434_101175389	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300006880\|Ga0075429_101143902	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	680	Open in IMG/M
3300006903\|Ga0075426_10135186	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1776	Open in IMG/M
3300006903\|Ga0075426_10176287	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300006914\|Ga0075436_100947550	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300007076\|Ga0075435_100332234	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300009094\|Ga0111539_10664308	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300009137\|Ga0066709_101809580	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300009147\|Ga0114129_11675704	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	776	Open in IMG/M
3300009148\|Ga0105243_11028777	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300009162\|Ga0075423_10391822	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300009162\|Ga0075423_10622969	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1137	Open in IMG/M
3300009162\|Ga0075423_10854917	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300009162\|Ga0075423_11415936	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300009167\|Ga0113563_11029538	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300009176\|Ga0105242_10238243	All Organisms → cellular organisms → Bacteria	1634	Open in IMG/M
3300009176\|Ga0105242_13208295	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300009609\|Ga0105347_1129179	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300009609\|Ga0105347_1162752	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300009817\|Ga0105062_1028008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300009821\|Ga0105064_1018768	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1267	Open in IMG/M
3300010326\|Ga0134065_10471034	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300010360\|Ga0126372_13170194	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300010362\|Ga0126377_13307720	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300010397\|Ga0134124_11359378	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300010397\|Ga0134124_12477985	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	561	Open in IMG/M
3300010398\|Ga0126383_10227754	All Organisms → cellular organisms → Bacteria → Proteobacteria	1811	Open in IMG/M
3300010401\|Ga0134121_11541240	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	681	Open in IMG/M
3300010401\|Ga0134121_12491299	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300011435\|Ga0137426_1052592	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300011437\|Ga0137429_1044538	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300011439\|Ga0137432_1266891	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	549	Open in IMG/M
3300012200\|Ga0137382_10343174	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300012201\|Ga0137365_11340308	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300012208\|Ga0137376_10067127	All Organisms → cellular organisms → Bacteria	2974	Open in IMG/M
3300012359\|Ga0137385_10407592	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300012685\|Ga0137397_10097637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	2151	Open in IMG/M
3300012922\|Ga0137394_10122258	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	2204	Open in IMG/M
3300012923\|Ga0137359_10017417	All Organisms → cellular organisms → Bacteria → Proteobacteria	6065	Open in IMG/M
3300012924\|Ga0137413_10709916	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	764	Open in IMG/M
3300012925\|Ga0137419_11216590	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300012944\|Ga0137410_10047483	All Organisms → cellular organisms → Bacteria → Proteobacteria	3049	Open in IMG/M
3300012986\|Ga0164304_10246759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	1195	Open in IMG/M
3300014880\|Ga0180082_1046163	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	923	Open in IMG/M
3300015241\|Ga0137418_10097549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	2647	Open in IMG/M
3300015242\|Ga0137412_10163838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	1789	Open in IMG/M
3300015245\|Ga0137409_10038277	All Organisms → cellular organisms → Bacteria	4617	Open in IMG/M
3300015371\|Ga0132258_12330067	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300015371\|Ga0132258_13430764	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300015374\|Ga0132255_101020513	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300015374\|Ga0132255_105829309	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300017656\|Ga0134112_10099646	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300017792\|Ga0163161_11453924	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	600	Open in IMG/M
3300018061\|Ga0184619_10493565	Not Available	541	Open in IMG/M
3300018074\|Ga0184640_10149984	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1039	Open in IMG/M
3300018084\|Ga0184629_10534104	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300018466\|Ga0190268_11841807	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300019879\|Ga0193723_1028732	All Organisms → cellular organisms → Bacteria → Proteobacteria	1681	Open in IMG/M
3300019881\|Ga0193707_1090663	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300020003\|Ga0193739_1060961	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300020006\|Ga0193735_1010013	All Organisms → cellular organisms → Bacteria	2985	Open in IMG/M
3300020018\|Ga0193721_1024217	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	1605	Open in IMG/M
3300021081\|Ga0210379_10211510	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300021344\|Ga0193719_10162458	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	961	Open in IMG/M
3300022534\|Ga0224452_1106661	Not Available	858	Open in IMG/M
3300022534\|Ga0224452_1138994	Not Available	748	Open in IMG/M
3300022883\|Ga0247786_1141975	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300025315\|Ga0207697_10108529	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300025934\|Ga0207686_11485610	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300025935\|Ga0207709_11757062	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	516	Open in IMG/M
3300025937\|Ga0207669_10997278	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	704	Open in IMG/M
3300026023\|Ga0207677_11084863	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300026089\|Ga0207648_10421756	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300026118\|Ga0207675_100950581	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	877	Open in IMG/M
3300026118\|Ga0207675_102402629	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300027722\|Ga0209819_10056485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1350	Open in IMG/M
3300027821\|Ga0209811_10008083	All Organisms → cellular organisms → Bacteria	3371	Open in IMG/M
3300027956\|Ga0209820_1018557	All Organisms → cellular organisms → Bacteria	1765	Open in IMG/M
3300028380\|Ga0268265_12152435	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300028536\|Ga0137415_10690340	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	833	Open in IMG/M
3300028807\|Ga0307305_10239182	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	831	Open in IMG/M
3300031170\|Ga0307498_10024130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	1426	Open in IMG/M
3300031199\|Ga0307495_10116388	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300031716\|Ga0310813_10640087	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300031740\|Ga0307468_100164422	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300031912\|Ga0306921_10513180	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300032122\|Ga0310895_10151775	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300032174\|Ga0307470_10187539	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300032421\|Ga0310812_10437044	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300033412\|Ga0310810_10543854	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300033419\|Ga0316601_100559816	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300033482\|Ga0316627_100999516	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300034894\|Ga0373916_0017849	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	864	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.83%
Host-Associated	Host-Associated	31.30%
Engineered	Engineered	0.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.91%
Plants	Host-Associated → Plants	31.30%
Aquatic	Environmental → Aquatic	13.91%
Bioremediation	Engineered → Bioremediation	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.04%
Sediment	Environmental → Aquatic → Sediment	10.43%
Freshwater	Environmental → Aquatic → Freshwater	3.48%
Metal	Engineered → Bioremediation → Metal	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.43%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.70%
Loam	Environmental → Terrestrial → Soil → Loam	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.35%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.74%
Sand	Environmental → Terrestrial → Soil → Sand	1.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.87%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.35%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.74%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.87%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.87%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.17%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.22%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.35%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.35%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.48%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.48%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.61%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.74%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.87%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.87%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.87%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300034894	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.2	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_112904082	3300000550	Soil	ENFLRLNFYSKVRWRLPIDPTKHYFDSKFEIKTTVHKQAEWRDKLAAAR*
JGI1027J11758_130329762	3300000789	Soil	ENFLRLNFYSKLRWRVPIDLTAHVINSKFEVTTTVHKQAEWRKKLAAAS*
JGI1027J12803_1019859512	3300000955	Soil	VRWHVPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR*
Ga0062593_1008010832	3300004114	Soil	RLNFYSKVRWRVPIDPTKHYFESRFEIKTTVHKPAEWREKLAAAR*
Ga0063356_1020404321	3300004463	Arabidopsis Thaliana Rhizosphere	PPEDENFLRLNFYSKVRWRVPIDPTKHYFDSRFEIKSTVHKQAEWREKLAAAR*
Ga0066690_103666872	3300005177	Soil	MSGPDHVPFYSKVRRPVPIDPTRHYFDSRFDIKTTVYKQAEWKEKLTAAR*
Ga0066688_103495221	3300005178	Soil	MSDPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLTAAR*
Ga0065704_108248642	3300005289	Switchgrass Rhizosphere	EDENFLRLNFYSKVRWHVPIDPTRHYFDSRFEIKTTVHKQAEWREKLAAAR*
Ga0070711_1011607401	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSGPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVYKQAEWKEKLTVAR*
Ga0070711_1019017301	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	NFYSKVRWRVPIDPTKHYFDSRFEIKTTVHKPAEWREKLAAAR*
Ga0070697_1008922321	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ENFLRLNFYSKVRWRVPIDPTKHYFDSEFEIKTTVHKQAEWREKLAAAR*
Ga0070697_1010771612	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	SKVRRRVPIDPTRHYFDSRFDIKTTVYKQAEWKEKLTAAR*
Ga0070695_1009021711	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	ENFLRLNFYSKVRWRVAIDPTKHYFDSKFEIKTAVHKQAEWREKLAAAR*
Ga0066695_107741301	3300005553	Soil	YSKVRWRVPIDPTKHYFDSKFEIKTTVHKQAEWRKNLAAAR*
Ga0068859_1027458951	3300005617	Switchgrass Rhizosphere	PEDENFLRLNFYSKVRWRVPIDPTKHYFESRFEIKTTVHKPAEWRKKLAVAR*
Ga0074470_117712548	3300005836	Sediment (Intertidal)	FLRLNFYSKLRWRVPMDPTKHYFNSKFEIATTVHKQAQWREQLAAAR*
Ga0068860_1007624572	3300005843	Switchgrass Rhizosphere	MSDPDHVPFYSKVRRRVPIDPTKHYFDSKFEVKTTVHKQAEWKEK
Ga0070716_1003940471	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	DENFLRLNFYSKVRWRVPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR*
Ga0079221_100957611	3300006804	Agricultural Soil	SKVRWRVPIDPSQHCFESRFEIKTTVHKRAEWRQKLAAAR*
Ga0075433_104296331	3300006852	Populus Rhizosphere	RWRVPIDPTRHYFDSKFEIKTTVHKQAEWREKLAAAR*
Ga0075433_110144912	3300006852	Populus Rhizosphere	MSGPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVYKQAEWKEKLTAAR*
Ga0075425_1002059732	3300006854	Populus Rhizosphere	MSGPDHVPFYSKVRLRVPIDPTRHYFDSRFDIKTTVYKQAEWKEKLTAAR*
Ga0075434_1011753891	3300006871	Populus Rhizosphere	RWHVPLDPTRHYFDSKFEIKTTVHKQAEWRKNLAAAR*
Ga0075429_1011439021	3300006880	Populus Rhizosphere	EDENFLRLNFYSKVRWHVPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR*
Ga0075426_101351862	3300006903	Populus Rhizosphere	MSDPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVYKQAEWKEKLTAAR*
Ga0075426_101762873	3300006903	Populus Rhizosphere	NFYSKVRWRVPIDPTKHYFDSRFEIKTTVHKPAEWREHLAAPR*
Ga0075436_1009475501	3300006914	Populus Rhizosphere	PEDENFLRLNFYSKVRWHVPIDPTRHYFDSRFEIKTTVHKQAEWRKNLAAAR*
Ga0075435_1003322342	3300007076	Populus Rhizosphere	MSDPDHVPFYSKVRRRVPIDPTKHYFDSKFEIKTTVHKQA
Ga0111539_106643081	3300009094	Populus Rhizosphere	MSGPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLTATR*
Ga0066709_1018095802	3300009137	Grasslands Soil	MSGPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLTAAR*
Ga0114129_116757042	3300009147	Populus Rhizosphere	MSGPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVCKQAEWKEKLTAAR*
Ga0105243_110287771	3300009148	Miscanthus Rhizosphere	MSDPDHVPFYSKVRRRVPIDPTKHYFDSKFEIKTTVHKQAEWKEKLTATR*
Ga0075423_103918221	3300009162	Populus Rhizosphere	FLRLNFYSKVRWQVPLDPTRHYFDSKFEIKTTVHKQAEWRKNLAAAR*
Ga0075423_106229692	3300009162	Populus Rhizosphere	MSDPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTIVYKQAEWKEKLTAAR*
Ga0075423_108549172	3300009162	Populus Rhizosphere	ENFLRLNFYSKVRWRLPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR*
Ga0075423_114159361	3300009162	Populus Rhizosphere	NFLRLNFYSKVRWHVPIDPTRHYFDSRFEIKTTVHKQAEWRKNLAAAR*
Ga0113563_110295381	3300009167	Freshwater Wetlands	EDENFLRLNFYSKVRWRVPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR*
Ga0105242_102382431	3300009176	Miscanthus Rhizosphere	MSDPDHVPFYSKVRRRVSIDPTRHYFDSRFDIKTT
Ga0105242_132082951	3300009176	Miscanthus Rhizosphere	MSDPDHVPFYSKVRRRVPIDPTKHYFDSKFEVKTTVHKQAEWREKLAAAR*
Ga0105347_11291792	3300009609	Soil	LRLNFYSKVRWRVPIDPTRHYFDSKFEIKSMVHKQAEWREKLAAAR*
Ga0105347_11627522	3300009609	Soil	VPIDPTRHYFDSRFEIKTTVHKQAEWREQLAAAR*
Ga0105062_10280081	3300009817	Groundwater Sand	DENFLRLNFYSKLRWRVPINPTEHAFDSKFEVTTTVHKQAEWRKKMAAAG*
Ga0105064_10187684	3300009821	Groundwater Sand	YSKLRWRVPIDPTEHAFDSKFEVTTTVHKQAEWRKKMAAAGGPGRWV*
Ga0134065_104710342	3300010326	Grasslands Soil	MSDPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTM
Ga0126372_131701941	3300010360	Tropical Forest Soil	SKVRWRVPIDPTRHYFDSKFEIKTTVHKQAEWRKNLAAAR*
Ga0126377_133077201	3300010362	Tropical Forest Soil	DENFLRLNFYSKLRWRVPINPTEHAFDSKFEVTTTVHKQAEWRKKMAATG*
Ga0134124_113593782	3300010397	Terrestrial Soil	FLRLNFYSKVRWRVPIDPTKHYFDSRFEIKTTVHKPAEWREHLAHRGDNANE*
Ga0134124_124779852	3300010397	Terrestrial Soil	EDESFLRLNFYSKVRWNVPMDPTRHYFDSKFEIKTTLHKQAEWREKLAAAR*
Ga0126383_102277543	3300010398	Tropical Forest Soil	ENFLRLNFYSKLRWRVPINPTEHAFDSKFEVTTTLHKQAEWRKKMAATR*
Ga0134121_115412402	3300010401	Terrestrial Soil	YSKVRWRVAIDPTKHYFDSKFEIKTAVHKQAEWREKLAAAR*
Ga0134121_124912991	3300010401	Terrestrial Soil	KVRWRVPIDPTKHYFDSRFEIKTTVHKPAEWREKLAVAR*
Ga0137426_10525922	3300011435	Soil	NFYSKGRWRVPIDPTKHYFDSKFEIKTTVHKHAEWREKLAAAR*
Ga0137429_10445381	3300011437	Soil	VRWRVPIDPTKHYFDSRFEIKTTVHKQAEWREKLAAAR*
Ga0137432_12668911	3300011439	Soil	VRWRVPIDPTKHYFDSRFEIKTTVHKQAAWREKLAAAR*
Ga0137382_103431742	3300012200	Vadose Zone Soil	MSGPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLPAAR*
Ga0137365_113403082	3300012201	Vadose Zone Soil	LRLNFYSKVRWRVPIDPTKRYFDSKFGIKTTVHKQAEWREKLAPAR*
Ga0137376_100671274	3300012208	Vadose Zone Soil	MSDPDHVPFYSKVRRRVPIDPTRHYFDSRFEIKTTVHKQAEWKEKLPAAR*
Ga0137385_104075921	3300012359	Vadose Zone Soil	VRWRVPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR*
Ga0137397_100976373	3300012685	Vadose Zone Soil	MSGPDHVPFYSKVRRRVPIDPTRHYFDSSFDIKTTVHKQAEWKEKLTAAR*
Ga0137394_101222582	3300012922	Vadose Zone Soil	MSDSDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLTAAR*
Ga0137359_100174172	3300012923	Vadose Zone Soil	MSGPDHVPFYSKVRRRVPIDPTRHYFDSRFEIKTTVHKQAEWKEKLTAAR*
Ga0137413_107099162	3300012924	Vadose Zone Soil	LANGKIVVSVMSRPDHVPFYSKVRRRVPIDPTKHYFDSKFEIKTTVHKQAEWKEKLTAPR
Ga0137419_112165902	3300012925	Vadose Zone Soil	MSDPDHVPFYSKVRRRVPIDPTKHYFDSKFEIKTTVHKQAEWKEKL
Ga0137410_100474835	3300012944	Vadose Zone Soil	MSDPDHVPFYSKVRRRVPIDPTRHYFDSRFEIKTTVHKQAEWKEKLTAAR*
Ga0164304_102467592	3300012986	Soil	SDMCPVMSDLDHVPFYSKVCRRVPIDPTRHYFDSRFDIKTTMHKQAEWKEKLTAAR*
Ga0180082_10461632	3300014880	Soil	GSKVRWRVPIDPTKHYFDSKFEIKTTVHKQAEWREKLVATR*
Ga0137418_100975492	3300015241	Vadose Zone Soil	MSDPDHFPFYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLTAAR*
Ga0137412_101638382	3300015242	Vadose Zone Soil	MCDSDHVPFYSKVRRRVPIDPTKHYFDSKFEIKTTVHKQAEWKEKLTAPR*
Ga0137409_100382775	3300015245	Vadose Zone Soil	MSDSDHVPFYSKVRRRVPIDPTRHYFDSRFEIKTTVHKQAEWKEKLTAAR*
Ga0132258_123300671	3300015371	Arabidopsis Rhizosphere	DENFLRLNFYSKVRWRVPIDPTKHYFDSRFEIKTTVHKPAQWREKLTAAR*
Ga0132258_134307641	3300015371	Arabidopsis Rhizosphere	PPEDENFLRLNFYSKVRWRVPIDPTKHYFDSRFEIKTTVHKPAEWRENLAVAR*
Ga0132255_1010205133	3300015374	Arabidopsis Rhizosphere	SKVRWRVPIDPTKHYFDSRFEIKTTVHKPAEWREKLAVAR*
Ga0132255_1058293092	3300015374	Arabidopsis Rhizosphere	RLNFYSKVRWRVPIDPTKHYFDSRFEIKTTVHKPAEWRENLAVAR*
Ga0134112_100996461	3300017656	Grasslands Soil	LNFYSKVRWRVPIDPTKHYFDSKFEIKTTVHKQAEWRKNLAAAR
Ga0163161_114539242	3300017792	Switchgrass Rhizosphere	MSDPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLTATR
Ga0184619_104935651	3300018061	Groundwater Sediment	FLRLNFYSKVRWRVPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR
Ga0184640_101499842	3300018074	Groundwater Sediment	MSDTDHVPFYSKVRRRVPIDPTKHYFDRKFEIKTTVQKQAEWKEKLTVAR
Ga0184629_105341042	3300018084	Groundwater Sediment	RLNFYSKVRWRVPIDPTKHYFDSRFEIKTTVHKQAEWREKLAAAR
Ga0190268_118418072	3300018466	Soil	WRVPIDPTRHYFDSRFEIKTTVHKQAEWREKLAAAR
Ga0193723_10287321	3300019879	Soil	RRRVPIDPTRHYFDSRFDIKTTVYKQAEWKEKLTAAR
Ga0193707_10906632	3300019881	Soil	MSGPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVYKQA
Ga0193739_10609612	3300020003	Soil	RLNFYSKIRWRVPIDPTKHYFDSRFEIKTTLHKQAEWREKLAAAR
Ga0193735_10100132	3300020006	Soil	MSGPDHVPFYSKVRRRVPIDPTRHYFDSRFEIKTTCTKQAEWKEKLTAAR
Ga0193721_10242172	3300020018	Soil	MSGPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLTAAR
Ga0210379_102115102	3300021081	Groundwater Sediment	NFYSKVRWRVPIDPTRHYFDSKFEIKTTVHKQAEWREKLAAAR
Ga0193719_101624582	3300021344	Soil	RVPIDPTRHYFDSRFDIKTTVYKQAEWKEKLTAAR
Ga0224452_11066613	3300022534	Groundwater Sediment	EDFLRLNFYSKVRWRVPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR
Ga0224452_11389941	3300022534	Groundwater Sediment	AANFYSKVRWRVPIDPTKHYFDSKFEIKTTVHKQAEWRKNLTATR
Ga0247786_11419752	3300022883	Soil	NFLRLNFYSKVRWRVPIDPSKHCFESRFEIKTTVHKRAEWREKLAAAR
Ga0207697_101085292	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLTAAR
Ga0207686_114856101	3300025934	Miscanthus Rhizosphere	MSDPDHVPFYSKVRRRVPIDPTRHYFDSKFEIKTTVHKQAEWREKLAAAR
Ga0207709_117570621	3300025935	Miscanthus Rhizosphere	HVPFYSKVRRRVPIDPTKHYFDSKFEIKTTVHKQAEWKEKLTATR
Ga0207669_109972782	3300025937	Miscanthus Rhizosphere	SSLANAKIVVSVMSDPDHVPVYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLTAAR
Ga0207677_110848631	3300026023	Miscanthus Rhizosphere	FYSKVRWRVPIDPSKHCFESRFEIKTTVHKRAEWREKLAAAQ
Ga0207648_104217561	3300026089	Miscanthus Rhizosphere	NFYSKVRWRVPIDPSKHCFESRFEIKTTVHKRAEWREKLAAAR
Ga0207675_1009505812	3300026118	Switchgrass Rhizosphere	MSDPDHVPFYSKVRRRVSIDPTRHYFDSRFDIKTTVHKQAEWKEKLTATR
Ga0207675_1024026292	3300026118	Switchgrass Rhizosphere	EDENFLRLNFYSKVRWRLPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR
Ga0209819_100564853	3300027722	Freshwater Sediment	NFYSKLRWRVPINPTEHAFDSKFEVTTTVHKQAEWRKQMAAAG
Ga0209811_100080835	3300027821	Surface Soil	MSDPDHVPFYSKVRRRVPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR
Ga0209820_10185575	3300027956	Freshwater Sediment	NFLRLNFYSKLRWRVPINPTEHAFDSKFEVTTTVHKQAEWRKKMAAAG
Ga0268265_121524352	3300028380	Switchgrass Rhizosphere	NFYSKVRWRLPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR
Ga0137415_106903402	3300028536	Vadose Zone Soil	SLANEKIVVSVMSDPDHVPFYSKVRRRVPIDPTRHYFDSRFEIKTTVHKQAEWKEKLTAA
Ga0307305_102391822	3300028807	Soil	LASVSSLANGKIVVSVMSGPDHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVYKQAEWKEKLTAAR
Ga0307498_100241302	3300031170	Soil	MSDTDHVPFYSKVRRRVPIDPTKHYFDSKFEIKTTVHKQAEWKEKLTAAR
Ga0307495_101163881	3300031199	Soil	MSDTDHVPFYSKVRRRVPIDPTRHYFDSRFEIKTTMHKQVEWKEK
Ga0310813_106400872	3300031716	Soil	FYSKVRWRVPIDPTKHYFDSRFEIKTTVHKPAEWREHLAAPR
Ga0307468_1001644222	3300031740	Hardwood Forest Soil	MSDPAHVPFYSKVRRRVPIDPTRHYFDSRFDIKTTVHKQAEWKEKLTAAR
Ga0306921_105131801	3300031912	Soil	NFLRLNFYSKVRWRVPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAVR
Ga0310895_101517752	3300032122	Soil	ENFLRLNFYSKVRWRVPIDPTKHYFESRFEIKTTVHKPAEWREKLAAAR
Ga0307470_101875392	3300032174	Hardwood Forest Soil	MSDPDHVPFYSKVRRRVPIDPTKHYFDSKFEIKTTVHKQAEWKEKLTATR
Ga0310812_104370441	3300032421	Soil	SKVRWRVPIDPSKHCFESRFEIKTTVHKRAEWREKLAAAR
Ga0310810_105438541	3300033412	Soil	KVRWRVPIDPSKHCFESRFEIKTTVHKRAEWREKLAAAR
Ga0316601_1005598162	3300033419	Soil	YSKVRWRVPIDPTKHYFDSKFEIKTTVHKQAEWREKLAAAR
Ga0316627_1009995161	3300033482	Soil	LNFYSKVRWRVPIDPTKHYFDSKFEITTTVHKRAEWREKLAAAR
Ga0373916_0017849_716_862	3300034894	Sediment Slurry	NFLRLNFYSKIRWRVPIDPTRHYFDSRFEIKTTVHKQAEWREKLAAAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080411

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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