Metagenome / Metatranscriptome Family F080379

Overview

Basic Information

• Family ID: F080379
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 115
• Average Sequence Length: 45 residues
• Representative Sequence: LSLVVETGDSVRDGAGESVCIGEGAVGELMLLEVAPASFDVVQ
• Number of Associated Samples: 76
• Number of Associated Scaffolds: 115

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 46.96 %
• % of genes near scaffold ends (potentially truncated): 68.70 %
• % of genes from short scaffolds (< 2000 bps): 96.52 %
• Associated GOLD sequencing projects: 70
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (79.130 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (12.174 % of family members)
• Environment Ontology (ENVO): Unclassified (26.957 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (62.609 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 0.00%
  Coil/Unstructured: 100.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF02371	Transposase_20	13.91
PF13358	DDE_3	7.83
PF12762	DDE_Tnp_IS1595	2.61
PF05598	DUF772	1.74
PF01609	DDE_Tnp_1	1.74
PF13546	DDE_5	1.74
PF07589	PEP-CTERM	1.74
PF14559	TPR_19	0.87
PF13419	HAD_2	0.87
PF00296	Bac_luciferase	0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	13.91
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.74
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.74
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.74
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.74
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.74
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.74
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.87
COG5387	Mitochondrial FoF1-type ATP synthase assembly chaperone ATP12	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.87

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.13 %
Unclassified	root	N/A	20.87 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.13 %
Unclassified	root	N/A	20.87 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.13 %
Unclassified	root	N/A	20.87 %

Level 4

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	6.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.30 %
Unclassified	root	N/A	20.87 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.43 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	6.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.87 %
Unclassified	root	N/A	20.87 %

Level 6

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	6.09 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.35 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5.22 %
Unclassified	root	N/A	20.87 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.35 %

Level 7

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.35 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.87 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.87 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.87 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.87 %
Unclassified	root	N/A	20.87 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	6.09 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.87 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	2.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.35 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6.09 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.87 %
Methyloligella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella	0.87 %
Nannocystineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae	0.87 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.87 %
Unclassified	root	N/A	20.87 %
unclassified Oxalobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae	0.87 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.35 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6.09 %
Kofleriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae	0.87 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.87 %
Methyloligella halotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	0.87 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.87 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.87 %
Unclassified	root	N/A	20.87 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	2.61 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	2.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.35 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6.09 %
Haliangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium	0.87 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.87 %
Methyloligella halotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	0.87 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.87 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.87 %
Unclassified	root	N/A	20.87 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	2.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.35 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6.09 %
Haliangium ochraceum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	0.87 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.87 %
Methyloligella halotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	0.87 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.87 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.87 %
Unclassified	root	N/A	20.87 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2170459019|G14TP7Y01CXJWS	All Organisms → cellular organisms → Bacteria → Proteobacteria	639
3300001686|C688J18823_10357991	All Organisms → cellular organisms → Bacteria	949
3300002568|C688J35102_117977592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520
3300002568|C688J35102_118958962	Not Available	618
3300002568|C688J35102_120066245	All Organisms → cellular organisms → Bacteria → Proteobacteria	866
3300004081|Ga0063454_100727767	Not Available	753
3300004081|Ga0063454_101383586	All Organisms → cellular organisms → Bacteria	595
3300004463|Ga0063356_106291689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	509
3300005178|Ga0066688_10923105	All Organisms → cellular organisms → Bacteria	537
3300005328|Ga0070676_10357951	All Organisms → cellular organisms → Bacteria → Proteobacteria	1005

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.87%
Environmental	Environmental	45.22%
Host-Associated	Host-Associated	53.91%

Class

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	53.91%
Solid Waste	Engineered → Solid Waste	0.87%
Terrestrial	Environmental → Terrestrial	45.22%

Category

Habitat	Taxonomy	Distribution
Grass	Engineered → Solid Waste → Grass	0.87%
Phylloplane	Host-Associated → Plants → Phylloplane	0.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.57%
Roots	Host-Associated → Plants → Roots	1.74%
Soil	Environmental → Terrestrial → Soil	45.22%

Type

Habitat	Taxonomy	Distribution
Composting	Engineered → Solid Waste → Grass → Composting	0.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.83%
Loam	Environmental → Terrestrial → Soil → Loam	12.17%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	16.52%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.74%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	1.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	12.17%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.87%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.74%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	16.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	12.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.83%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.87%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.87%

Habitat

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.48%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.74%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	11.30%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	10.43%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.61%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.35%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.87%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.48%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	12.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.87%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2170459019	Litter degradation MG4	Engineered
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_02795450	2170459019	Switchgrass, Maize And Mischanthus Litter	MGLSFVVETGDGIRDGAGKSVGIGEGAISELMLLEVAPASFDSLPRT
C688J18823_103579912	3300001686	Soil	MRLPLVVETGDGVRDGAFESVGLGEGTISEIMLLEVTPASLDVI
C688J35102_1179775921	3300002568	Soil	NGRWMSLSFLVEASDGVRDGAFESVEIGEGTIGQIMLLEVAPASLDSLPRT*
C688J35102_1189589622	3300002568	Soil	LSLVVEPGDSVRDSSGESVGIGEGAVGELILLEVAPASLDSLPRT*
C688J35102_1200662452	3300002568	Soil	MGDSVRDGAFESVGIGEGTIGQLMLLEVAPASLDSLPWT*
Ga0063454_1007277671	3300004081	Soil	MSLSFLVEASDGVRDGAFESVEIGEGTIGQIMLLEVAPASLD
Ga0063454_1013835861	3300004081	Soil	MRLPLVVEAGDRVRDGTGESVGIGKGTVGELMLLEVAPASLDVIQL
Ga0063356_1062916891	3300004463	Arabidopsis Thaliana Rhizosphere	VVETGDSVRDGAGESVCIGEGAVGELMLLEVAPASFDVVQ
Ga0066688_109231051	3300005178	Soil	VVETGDSVRDGVGESVGVSEGAVGELMLLEVAPASLEVVQLGGVFRQS*
Ga0070676_103579512	3300005328	Miscanthus Rhizosphere	VLALVVEAGDGVRDGAGKSIGIGEGAVGELMLLEIAPASFDVVQFGG
Ga0068869_1001945261	3300005334	Miscanthus Rhizosphere	MSLSLVVETGDSVRDGAFESVDIGESAIGKLMLLKIAPASFDVVQFGGVF
Ga0070675_1019469521	3300005354	Miscanthus Rhizosphere	MNEVAARVETGESVRDRAGESVGIGEGTISEMMLFEVAPAPFDVVQFGGIF
Ga0070711_1012054921	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRLSLVVETGDGVRDGAFESIGIGDGSIGQIMLLEVAPASFDSLPRT*
Ga0070700_1009457421	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MGLSLVVEAGDSIRDGAGKSVGIGEGAISELMLLEVAPASFDVVQFGGVFR
Ga0070678_1000611382	3300005456	Miscanthus Rhizosphere	MRLPLVVETGDSVRDGASESVGIGEGTISEIMLLEVAPASLDSLPRT*
Ga0070685_106487142	3300005466	Switchgrass Rhizosphere	VVETGDSVRDGAGESVCIGEGAVGELMLLEVAPASFDVVQFG
Ga0070684_1019349571	3300005535	Corn Rhizosphere	MSLSLVVETGDSVRDGAFESVGIGEGAIGELMLLEVAPTS
Ga0068854_1014263681	3300005578	Corn Rhizosphere	LSLVVETGDSVRDGAFESVGIGEGAIGELMLLEVAPTSLDVIQFGGVFG*
Ga0068866_107635462	3300005718	Miscanthus Rhizosphere	MSLSLVVETGDSVRDGAFESVGIGEGTIGQIMLLEVAPASLDVVQFGGVFR
Ga0068860_1019977651	3300005843	Switchgrass Rhizosphere	VIEAINGVPDGAVESAGISEGAISERMLFEVAPASFHVVQLGAGGSHL
Ga0070716_1011689851	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MGLSLVVEAGDSIRDGAGKSVGIGEGAISELMLLEVAPASFDVVQ
Ga0097621_1000753164	3300006237	Miscanthus Rhizosphere	MGLSLVVAPGDGVMDGMVEKVGIGEGAVAEVMLG*
Ga0075425_1020587682	3300006854	Populus Rhizosphere	MSLSLVVETGDSVRDGAFESVGIGEGAIGELMLLEVAPTSLDVIQFGGVF
Ga0079219_115297121	3300006954	Agricultural Soil	LSLVVEAGDGVRDGAGESVGIDEGTIGQIVLLEVAPASFDIV*
Ga0079219_117076081	3300006954	Agricultural Soil	LSFVVEVGDSVRDGAFESVGIGEGTIGQIMLLEVAPAS
Ga0075419_104039802	3300006969	Populus Rhizosphere	MGLPIVVETGNSVRDGASESVGIGEGSVGQIMLLEVTPASLDVIQLGGVFR*
Ga0079218_106260511	3300007004	Agricultural Soil	MGLPLVVETGDSIRDGVGESVGIGEGAIGQIMLLEVAPASLDVVQLG
Ga0075418_115629991	3300009100	Populus Rhizosphere	LSLVVETGNGVRDGAGESVGIGEGTVGELMLLEVAPASFDV
Ga0105247_101616241	3300009101	Switchgrass Rhizosphere	LSLVVETGDGVRDSAGESIGIGEGAIGELMLLQVAPASFDIVQ
Ga0111538_140788771	3300009156	Populus Rhizosphere	LSLVVETGDSVRDGAGESIGIGEGAVGELMLLEVAPASFDVVQLGDVFRQS*
Ga0105248_110640792	3300009177	Switchgrass Rhizosphere	MGLSLVVEAGDSIRDGAGKSVGIGEGAISELMLLEVAPASFDSLPRT*
Ga0105237_117201241	3300009545	Corn Rhizosphere	MSLSLVVETGDSVRDGAFESVRIGEGAIGELMLLEVAPASF
Ga0126307_111780322	3300009789	Serpentine Soil	MGLPLVVETGDSVRDSASASVGINEGTVSELMLLEVAPASFDIVQLGGVFW*
Ga0126305_106541282	3300010036	Serpentine Soil	MRLALVVEAINGVMDCTLESVGIGEGTIGELMLLEVAPASLDSLPRT*
Ga0126309_104972862	3300010039	Serpentine Soil	DGVRDGAGESVGIGEGSVGELMLLEVAPASFDSLPRT*
Ga0126309_106036323	3300010039	Serpentine Soil	MRFPLVVETGDSVRDGAGESVGIGEGTISEIMLLEVTPASLDVI
Ga0126308_102191751	3300010040	Serpentine Soil	LSLVVETIDGVRDGAGESVGIGEGMIGELMLFEVAPASLDVVQF
Ga0126308_103449241	3300010040	Serpentine Soil	MRLAFVVEAVNGIVDRTIESGGIGEGAVGELMQLEIAPTSFDCLPRT*
Ga0126312_105615981	3300010041	Serpentine Soil	MRLLLVVETGDSVRDDMTESVGIGESMGGELMLLQVSPASFDIVQ
Ga0126310_105137403	3300010044	Serpentine Soil	MRLPLVVETGDSVRNGSGENVGIGEGAIGELMLLEVAPA
Ga0126310_117147531	3300010044	Serpentine Soil	MKLPLVVEPGDSARDGAGESVDIGESAIGKLMLLEVAPASFDVVQLRGVF
Ga0126311_107014261	3300010045	Serpentine Soil	LSLVIEAGDSVMDDMGESIGIGEGTIGEIMLLQVAPAP
Ga0126311_107572183	3300010045	Serpentine Soil	MRLSLVVEAGDSIMNGAVESVEIGGGMVGEIMLLEVTPASLDSLPRT*
Ga0126311_110115972	3300010045	Serpentine Soil	MRLSLVVETGDSVRDGTGESVGIGEGTISEIMLLEVTPASLDVV
Ga0126311_115373261	3300010045	Serpentine Soil	MRLSLVVEASDSIMNGAVESVEIGEGMVGEIMLLEVTPASLDSLPRT
Ga0126311_118161061	3300010045	Serpentine Soil	MVAAGDGVMDGAVESIGIDEGAVGEIMLLEVAPASL
Ga0134128_110524062	3300010373	Terrestrial Soil	MRLSLVVEAGDSVRDGAFESVGISEGTIGEIMLFEIAPASLDV
Ga0105239_106537691	3300010375	Corn Rhizosphere	MGLSFVVETGDGIRDGAGKSVGIGEGAVGELMLLEVAPASFD
Ga0105239_110004731	3300010375	Corn Rhizosphere	LSLVVETGDSVRDGAGESVCIGEGAVGELMLLEVAPASFDVVQ
Ga0134122_119112701	3300010400	Terrestrial Soil	LSLVVERGNRVRDGAGESVGVSEGAVSELMLLEVAPAPFDVVQFG
Ga0105246_113687222	3300011119	Miscanthus Rhizosphere	MGVSLVVETGDGVVDCAFESIGIGDGAIGQIMLLEVAPASLDIVQ
Ga0150985_1007469442	3300012212	Avena Fatua Rhizosphere	LSFVVETGDGVRDGAGESVGIGEGSVGELMLLEVAPASFDIVQ
Ga0150985_1017927813	3300012212	Avena Fatua Rhizosphere	MRLPLVIETGDSVRDGAGESVGIGEGAIGELMLLEVAPASFDVVQLR
Ga0150985_1021259961	3300012212	Avena Fatua Rhizosphere	MGLSLVVETGDSIRDGAGESVGIGEGAIGELMLLEVAPASFDSLPRT*
Ga0150985_1024195011	3300012212	Avena Fatua Rhizosphere	VVESGDSIRDGAGESVGIGEGAIGELMLLEVAPASFDVVQF
Ga0150985_1077454551	3300012212	Avena Fatua Rhizosphere	LSFVVEVGDSVRDGAFESVGIGEGTIGQIMLLEVAPASFDIVQFGGVF
Ga0150985_1124432241	3300012212	Avena Fatua Rhizosphere	LALVVEAGDSVRDGVGESIGIGEGSVGELMLLEVAPASFD
Ga0150985_1133462241	3300012212	Avena Fatua Rhizosphere	MGLSLMVKAGDSVRDSAGESIGIGEGAVGELMLLEVAPASFDIVQFGGVFR
Ga0150985_1142224392	3300012212	Avena Fatua Rhizosphere	LSLVVEAGDSVRDGAGESVGIGEGAVDEIMLLEVA
Ga0150985_1151457861	3300012212	Avena Fatua Rhizosphere	MELSLVVETGDCIRDGAGEIVGIGEGAVGELMLLEV
Ga0150985_1157473362	3300012212	Avena Fatua Rhizosphere	MGLSFVVETGDGIRDGAGKSVGIGEGAISELMLLEVAPASFDSLPRT*
Ga0150985_1188003581	3300012212	Avena Fatua Rhizosphere	LSLVVETGDGVRDGAGESVGIGEGSIGELMLLEVAPASFDIVQFGGILRQPFEG
Ga0150985_1219632922	3300012212	Avena Fatua Rhizosphere	MELSFVVEAGDSVRDSARESVGIGEGSVGELMLLEVAPASFDSLPRT*
Ga0150984_1005730901	3300012469	Avena Fatua Rhizosphere	MGLPLVVETGDGVRDDTGESLDINERAVRELMLLEVAPASFDVVQFGGVFRQPFEG
Ga0150984_1056433183	3300012469	Avena Fatua Rhizosphere	MRLPLVVETGDSVRDGAGESVGIGEGAIGELMLLE
Ga0150984_1084084061	3300012469	Avena Fatua Rhizosphere	LSLVVETGDSVRDGVGESIGIGEGAVGELMLHEVAPASFDVVQLRGVFRQS*
Ga0150984_1132380722	3300012469	Avena Fatua Rhizosphere	LALVVKTGDSVRDGAFESVDIGEGAIGELMLLEDAPASFDSLPRT*
Ga0150984_1136843551	3300012469	Avena Fatua Rhizosphere	MGLSLMVKAGDSVRDSAGESIGIGEGAVGELMLLEVAPASFDIVQFGGVFR*
Ga0150984_1137860941	3300012469	Avena Fatua Rhizosphere	VVETGDSVRDGAGESVGIGEGTISEIMLLEVTPASLD
Ga0150984_1171205282	3300012469	Avena Fatua Rhizosphere	MGLSFMVKAGDSVRDGAGENVGIGEGTVGELMLLEVAPASFDSLPRT*
Ga0150984_1175584831	3300012469	Avena Fatua Rhizosphere	MGLPLVVETGDSVMDGAVESADIGEGVVGEIMLLEVAPASLDVSFPPV*
Ga0150984_1189666911	3300012469	Avena Fatua Rhizosphere	MRLSLVVKTGDSVRDGAFESVGISEGTIGEIMLFEIAPASLDSLPRT*
Ga0150984_1193389971	3300012469	Avena Fatua Rhizosphere	MGLSLVIETGDSIGDGAFESVGIGEGMIGELMLLEVAPASLDIVQLGSV
Ga0150984_1203809971	3300012469	Avena Fatua Rhizosphere	LSLVVEAGDSVRDGAGESVGVSEGAVGELMLLEIAPAPFDVVQFG
Ga0150984_1220088961	3300012469	Avena Fatua Rhizosphere	MRLSLVVETGDSVRDGAGERVGIGEGAVGELMLLEVAPASFDIVQFWGVFGQPFE
Ga0150984_1233569951	3300012469	Avena Fatua Rhizosphere	MRIPLVVETGDSVRDSASENVGIGESTISEIMLLEVAPASLDVIQFGGVFR*
Ga0164298_105388871	3300012955	Soil	MRLSLVVETGDGVRDGAFESIGIGDGSIGQIMLLEVAPAS
Ga0164303_109435911	3300012957	Soil	LVVETTDSVRDGAGESIGIGESSVGELMLLEVAPASFNVVQFGGVL*
Ga0164303_110626661	3300012957	Soil	VETGDSVRDGVGESIGVAEGSVGELMLLEVAPASLEVVQLGGVFRQS*
Ga0157378_119553891	3300013297	Miscanthus Rhizosphere	LSLVVETGDSAKDGAVESVGIGEGTVGELMLLEVTPASLDIVQFGGVFRRS*
Ga0157378_131395881	3300013297	Miscanthus Rhizosphere	MRLPLVVETGDSVRDGASESVGIGEGTISEIMLLEVAPASLDVVQFGGVFR*
Ga0163162_114254782	3300013306	Switchgrass Rhizosphere	LSLVVETGDSVRDGAGESVGIGEGAVGELMLLEVAPA
Ga0163162_126501501	3300013306	Switchgrass Rhizosphere	VLALVVEAGDSVRDGAFESVGIDEGTIGELMLLEVAP
Ga0163163_110719291	3300014325	Switchgrass Rhizosphere	MRLSLVIETGDGVVDRAFESIGIGDGSIGQIMLLEVA
Ga0157380_108729932	3300014326	Switchgrass Rhizosphere	MRLPLVVQTGDSVRDGAGESVGIGEGTISEIMLLEVTPASLDGIQLGGIFRQPFEGE
Ga0182000_104930672	3300014487	Soil	LPLVVETGDSVRDDAVESVGIGEDAAGELMLLEVAPAAFDIVQLRGVFWQSLEGEPRALG
Ga0157377_115634491	3300014745	Miscanthus Rhizosphere	MRLPLVVETGDSVMNGVGESIGIGEGAIGELMLLQVAPASFGSEAYFGSLRG*
Ga0132258_139674342	3300015371	Arabidopsis Rhizosphere	LELSFVVETSDGIRDGAGESIGIGEGAISELMLLEVAPASFDVVQFGGVFR*
Ga0132255_1053268632	3300015374	Arabidopsis Rhizosphere	MRLSLVVEAGDSVGEGAGKSIGVGEVAIGELMLFEVAPA
Ga0163161_100748895	3300017792	Switchgrass Rhizosphere	MRLSLVVETGDSVRDGASESVGIGEGTISEIMLLE
Ga0190265_116094431	3300018422	Soil	VVQTGDSVRDGAGESVGIGEGAIGQIMLLEVTPASLDVI
Ga0066667_119437482	3300018433	Grasslands Soil	MVKAGDSVRDSAGESIGIGEGAVGELMLLEVAPASFDSLPRT
Ga0190268_113467852	3300018466	Soil	LSLAVETGDSVRDGAFESVGIGEGMIGQKMLLEVTPASLDVIQLGGVFRQ
Ga0173479_104168611	3300019362	Soil	LSLVVETGDSVRDGAGESVCIGEGAVGELMLLEVAPASFDVVQLGDVFRQS
Ga0207680_104802111	3300025903	Switchgrass Rhizosphere	MSLSLVVETGDSVRDGAFESVGIGEGAIGELMLLEVAPTSLDVIQ
Ga0207645_110886841	3300025907	Miscanthus Rhizosphere	MGLSLVVETGDSIRDGAGESVGIGEGAISELMLLEVAPASFDVVQLGSVFR
Ga0207652_114482342	3300025921	Corn Rhizosphere	MGLSFVVETGDGIRDGAGKSVGIGEGAVGELMLLEVAPASFDVVQ
Ga0207687_100840173	3300025927	Miscanthus Rhizosphere	MRLPLVVETGDSVRDGASESVGIGEGTISEIMLLEVAPASLDSLPRT
Ga0207679_120202082	3300025945	Corn Rhizosphere	MRLPLVVETGDSVRDGASESIGIGEGAVGELMLLEV
Ga0207658_111700001	3300025986	Switchgrass Rhizosphere	MSLSLVVETGDSVRDGAFESVGIGEGAISELMLLEVAPASFDVVQFGSVFR
Ga0207708_105192471	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRLSLVVETGDDVVDRAFESIGIGDGSIGQIMLLEVAPASFDVVQFGGV
Ga0207708_113882251	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MGLSLVVEAGDSIRDGAGKSVGIGEGAISELMLLEVAPASFDVVQLRGVFR
Ga0207676_103295501	3300026095	Switchgrass Rhizosphere	MSLSLVVETGDSVRDGGFESVGIGEGAIGELMLLEVAPTSLDVIQFGGVF
Ga0207683_110917152	3300026121	Miscanthus Rhizosphere	LALVVEAGDSVGESIGIGDGAITEIMLLEVAPASFDI
Ga0209177_100223933	3300027775	Agricultural Soil	MGLSFVVETGDGIRDGAGKSVGIGEGAISELMLLEVAPASFDVVQFGGVFR
Ga0209488_111470742	3300027903	Vadose Zone Soil	VVEAGDSVRDGVGESVGIGECAVGELMLLEVAPASLDIVQLG
Ga0247713_10903762	3300028104	Soil	MRLPLVVETGDSVRNGAGESVGIGERAVGELMLLEVAPASFDSLPRT
Ga0268253_100127664	3300030514	Agave	MGLSFVVETGEGSRDGAGKSVGIGEGAVSELMLLEVAPASFDVVQFGG
Ga0308183_10872912	3300030988	Soil	VVEAGDSVGDGAGESIGIGESAVGELMLLEVAPASFDVVQFGGVFRQ
Ga0308189_100560343	3300031058	Soil	VVETGDSVRDGAFESVGIGEGAIGELMLLEVAPTSLDVIQFGGVFRQPFD
Ga0310886_105773502	3300031562	Soil	VVETGDSVRDGAGESVGIGEGSIGQIMLLEVAPASLDVI
Ga0308174_117766002	3300031939	Soil	MGLSLVVETGDSVRNGMGESIGIGEGSVGELMLLEVA
Ga0308173_122090141	3300032074	Soil	VVETGDNVRDSAGESVGIGKGAVGELMLFEVAPAPFD
Ga0334915_049018_729_851	3300034132	Hypolithic Biocrust	MGLPLVVEAGDSVRDGAGESVGIGEGAIGELMLLEVAPASL
Ga0334943_053241_1_153	3300034137	Biocrust	MRLPLVVETGDSIRDGAGESVGIGEGAIGELMLLEVAPASLDIVQLGGVFR