Metagenome / Metatranscriptome Family F080279

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080279
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	69 residues
Representative Sequence	MFDFFLAALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKREVERKCKVA
Number of Associated Samples	72
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.48 %
% of genes near scaffold ends (potentially truncated)	20.00 %
% of genes from short scaffolds (< 2000 bps)	69.57 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.043 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.043 % of family members)
Environment Ontology (ENVO)	Unclassified (53.043 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.087 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.63% β-sheet: 0.00% Coil/Unstructured: 59.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF11453	DUF2950	47.83
PF07813	LTXXQ	15.65
PF11737	DUF3300	3.48
PF03706	LPG_synthase_TM	1.74
PF00691	OmpA	1.74
PF03061	4HBT	0.87
PF13185	GAF_2	0.87
PF02781	G6PD_C	0.87
PF12704	MacB_PCD	0.87
PF00296	Bac_luciferase	0.87
PF01694	Rhomboid	0.87
PF08308	PEGA	0.87
PF08818	DUF1801	0.87
PF13620	CarboxypepD_reg	0.87
PF12680	SnoaL_2	0.87
PF08281	Sigma70_r4_2	0.87
PF01979	Amidohydro_1	0.87
PF03551	PadR	0.87
PF00873	ACR_tran	0.87
PF00106	adh_short	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	62.61
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	1.74
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.87
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.87
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.87
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.87
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.87
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.87
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.04 %
Unclassified	root	N/A	6.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.04 %
Unclassified	root	N/A	6.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.04 %
Unclassified	root	N/A	6.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	14.78 %
Unclassified	root	N/A	6.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.17 %
Unclassified	root	N/A	6.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.74 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	12.17 %
Unclassified	root	N/A	6.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.74 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12.17 %
Unclassified	root	N/A	6.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.74 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.74 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.87 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.74 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.87 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.74 %
Granulicella sp. GAS466	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	0.87 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10011970	All Organisms → cellular organisms → Bacteria	3439	Open in IMG/M
3300001867\|JGI12627J18819_10020158	All Organisms → cellular organisms → Bacteria	2717	Open in IMG/M
3300001867\|JGI12627J18819_10101079	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300003505\|JGIcombinedJ51221_10074176	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300005174\|Ga0066680_10604428	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300005447\|Ga0066689_10164298	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300005468\|Ga0070707_100208106	All Organisms → cellular organisms → Bacteria	1907	Open in IMG/M
3300005534\|Ga0070735_10355909	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300005541\|Ga0070733_10022373	All Organisms → cellular organisms → Bacteria	3935	Open in IMG/M
3300005541\|Ga0070733_11138117	Not Available	523	Open in IMG/M
3300005542\|Ga0070732_10765260	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300005591\|Ga0070761_10822073	Not Available	585	Open in IMG/M
3300006028\|Ga0070717_10003390	All Organisms → cellular organisms → Bacteria	11394	Open in IMG/M
3300006176\|Ga0070765_100056016	All Organisms → cellular organisms → Bacteria	3241	Open in IMG/M
3300006176\|Ga0070765_102003716	Not Available	542	Open in IMG/M
3300006755\|Ga0079222_10738838	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300006804\|Ga0079221_10139206	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300006854\|Ga0075425_100618378	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300007982\|Ga0102924_1003857	All Organisms → cellular organisms → Bacteria	15494	Open in IMG/M
3300009137\|Ga0066709_100118671	All Organisms → cellular organisms → Bacteria	3299	Open in IMG/M
3300012083\|Ga0154000_1100720	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	603	Open in IMG/M
3300012925\|Ga0137419_10022566	All Organisms → cellular organisms → Bacteria → Acidobacteria	3709	Open in IMG/M
3300012927\|Ga0137416_10011348	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5356	Open in IMG/M
3300012944\|Ga0137410_10808900	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	787	Open in IMG/M
3300020579\|Ga0210407_10003799	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12099	Open in IMG/M
3300020579\|Ga0210407_10007168	All Organisms → cellular organisms → Bacteria	8444	Open in IMG/M
3300020579\|Ga0210407_10043059	All Organisms → cellular organisms → Bacteria	3359	Open in IMG/M
3300020579\|Ga0210407_10217967	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300020579\|Ga0210407_10408180	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300020580\|Ga0210403_10118438	All Organisms → cellular organisms → Bacteria	2154	Open in IMG/M
3300020580\|Ga0210403_10154849	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300020580\|Ga0210403_10216526	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300020580\|Ga0210403_10903442	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300020581\|Ga0210399_10999923	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300020582\|Ga0210395_10162825	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300020583\|Ga0210401_10037950	All Organisms → cellular organisms → Bacteria	4575	Open in IMG/M
3300020583\|Ga0210401_10315173	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300020583\|Ga0210401_10315616	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300020583\|Ga0210401_10495729	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300020583\|Ga0210401_10907354	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300021088\|Ga0210404_10000245	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	32379	Open in IMG/M
3300021088\|Ga0210404_10600640	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300021168\|Ga0210406_10016214	All Organisms → cellular organisms → Bacteria	7071	Open in IMG/M
3300021168\|Ga0210406_10164926	All Organisms → cellular organisms → Bacteria	1854	Open in IMG/M
3300021171\|Ga0210405_10017146	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5933	Open in IMG/M
3300021180\|Ga0210396_10005559	All Organisms → cellular organisms → Bacteria	12172	Open in IMG/M
3300021180\|Ga0210396_10089523	All Organisms → cellular organisms → Bacteria	2789	Open in IMG/M
3300021404\|Ga0210389_10702974	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300021420\|Ga0210394_11222289	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	644	Open in IMG/M
3300021432\|Ga0210384_10343489	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300021432\|Ga0210384_10409491	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300021432\|Ga0210384_11206115	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	661	Open in IMG/M
3300021433\|Ga0210391_10987122	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300021474\|Ga0210390_10527841	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300021475\|Ga0210392_10638120	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300021479\|Ga0210410_10012817	All Organisms → cellular organisms → Bacteria	7218	Open in IMG/M
3300021479\|Ga0210410_10059975	All Organisms → cellular organisms → Bacteria	3321	Open in IMG/M
3300021559\|Ga0210409_10081689	All Organisms → cellular organisms → Bacteria	2993	Open in IMG/M
3300021559\|Ga0210409_10176394	All Organisms → cellular organisms → Bacteria	1952	Open in IMG/M
3300021559\|Ga0210409_11205750	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	632	Open in IMG/M
3300022557\|Ga0212123_10010129	All Organisms → cellular organisms → Bacteria	13442	Open in IMG/M
3300025915\|Ga0207693_10621245	Not Available	840	Open in IMG/M
3300025922\|Ga0207646_10170533	All Organisms → cellular organisms → Bacteria	1965	Open in IMG/M
3300026320\|Ga0209131_1273291	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	647	Open in IMG/M
3300026332\|Ga0209803_1168210	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300026538\|Ga0209056_10175788	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300026998\|Ga0208369_1005735	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300027050\|Ga0209325_1000020	All Organisms → cellular organisms → Bacteria	6116	Open in IMG/M
3300027070\|Ga0208365_1041233	Not Available	615	Open in IMG/M
3300027071\|Ga0209214_1002197	All Organisms → cellular organisms → Bacteria	1888	Open in IMG/M
3300027109\|Ga0208603_1005038	All Organisms → cellular organisms → Bacteria	2195	Open in IMG/M
3300027161\|Ga0208368_106636	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300027326\|Ga0209731_1002151	All Organisms → cellular organisms → Bacteria	2232	Open in IMG/M
3300027371\|Ga0209418_1004161	All Organisms → cellular organisms → Bacteria	1977	Open in IMG/M
3300027502\|Ga0209622_1008965	All Organisms → cellular organisms → Bacteria	1661	Open in IMG/M
3300027502\|Ga0209622_1095126	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300027548\|Ga0209523_1107574	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300027576\|Ga0209003_1020516	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300027583\|Ga0209527_1045025	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300027767\|Ga0209655_10002384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	6675	Open in IMG/M
3300027795\|Ga0209139_10042914	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300027826\|Ga0209060_10316543	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300027867\|Ga0209167_10009074	All Organisms → cellular organisms → Bacteria	4756	Open in IMG/M
3300027867\|Ga0209167_10688503	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	559	Open in IMG/M
3300027986\|Ga0209168_10110972	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300028536\|Ga0137415_10015714	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7504	Open in IMG/M
3300029636\|Ga0222749_10000221	All Organisms → cellular organisms → Bacteria	36876	Open in IMG/M
3300029636\|Ga0222749_10142580	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300030730\|Ga0307482_1288034	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031057\|Ga0170834_107972733	Not Available	562	Open in IMG/M
3300031715\|Ga0307476_10000122	All Organisms → cellular organisms → Bacteria	81609	Open in IMG/M
3300031715\|Ga0307476_10000847	All Organisms → cellular organisms → Bacteria	20771	Open in IMG/M
3300031715\|Ga0307476_10485377	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	915	Open in IMG/M
3300031715\|Ga0307476_10535623	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300031715\|Ga0307476_10693544	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300031718\|Ga0307474_10003732	All Organisms → cellular organisms → Bacteria	10989	Open in IMG/M
3300031718\|Ga0307474_10210865	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300031753\|Ga0307477_10555896	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300031753\|Ga0307477_10640724	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300031753\|Ga0307477_10727448	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300031753\|Ga0307477_11001195	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	548	Open in IMG/M
3300031754\|Ga0307475_10244311	All Organisms → cellular organisms → Bacteria	1438	Open in IMG/M
3300031754\|Ga0307475_10248420	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300031754\|Ga0307475_10304565	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300031754\|Ga0307475_10585389	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300031754\|Ga0307475_10630557	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300031754\|Ga0307475_11159044	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300031823\|Ga0307478_10534153	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300031962\|Ga0307479_10436889	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300031962\|Ga0307479_11353449	Not Available	672	Open in IMG/M
3300032174\|Ga0307470_10005811	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	4845	Open in IMG/M
3300032174\|Ga0307470_10124744	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300032174\|Ga0307470_10275126	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300032180\|Ga0307471_100056449	All Organisms → cellular organisms → Bacteria	3281	Open in IMG/M
3300032180\|Ga0307471_102617159	Not Available	639	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.26%
Host-Associated	Host-Associated	1.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.78%
Aquatic	Environmental → Aquatic	3.48%
Plants	Host-Associated → Plants	0.87%
Fungi	Host-Associated → Fungi	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.78%
Freshwater	Environmental → Aquatic → Freshwater	1.74%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.87%
Mycelium	Host-Associated → Fungi → Mycelium	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.91%
Loam	Environmental → Terrestrial → Soil → Loam	20.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.74%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.87%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	56.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.74%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.04%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	22.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.48%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.61%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.74%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.87%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300012083	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC084 MetaG	Host-Associated	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026998	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027161	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_100119702	3300001867	Forest Soil	MCDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIEPTGKRTEVQDMIPRRPNTRTVQRKDKVA*
JGI12627J18819_100201583	3300001867	Forest Soil	MPMFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYREAEIETTGKKTKVPDMTPRRLYTSTVQRNGKVA*
JGI12627J18819_101010792	3300001867	Forest Soil	MCDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIETTGKRTEVQDMTPRSLHTRTVQRKGKVA*
JGIcombinedJ51221_100741761	3300003505	Forest Soil	DLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIETTGKRTEVQDMIPWRPNTRTVQRKDKVA*
Ga0066680_106044281	3300005174	Soil	ESSPCATLRGLTSLDLHGDEMSMFDFFLAALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKREVERKCKVA*
Ga0066689_101642982	3300005447	Soil	MSMFDFFLAALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKREVERKCKVA*
Ga0070707_1002081061	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSIFDFFLAALSLASVGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGPGGPGHDRAGAAQEVESKCKTA*
Ga0070735_103559092	3300005534	Surface Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEVEDMTPRRLYTRTVQRNGKVA*
Ga0070733_100223735	3300005541	Surface Soil	MSMFDFFLAALSLAPLGLFLLFWRMFPRDRGIHPIYRDAEIEMRDNGTGAQETARRLHKSEIERNCKAA*
Ga0070733_111381171	3300005541	Surface Soil	MFDFFLAALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIETIDSGTGTQESARRLQKREVERKCKAA*
Ga0070732_107652602	3300005542	Surface Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKKTEVPDMTPRRLHTRTVQRNGKVA*
Ga0070761_108220731	3300005591	Soil	MSMFDLFLAALSLAPVGLFLLFWRIFPRDRGIHPIYRESGIEMIDNGTGAQDTARRLHKREVERKCKAA*
Ga0070717_100033908	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESELETTGKRTKVPDMTPRRPHTRTVQRKGKVA*
Ga0070765_1000560164	3300006176	Soil	MSMFDLFLAALSLAPVGLFLLFWRMFPRDRGVHPIYRESGIETIDNGTEVQDATARRPQMRTVERKGKVG*
Ga0070765_1020037162	3300006176	Soil	MFDLFLATLSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEVPDMTPRRLHTRTVQRKRKVA*
Ga0079222_107388382	3300006755	Agricultural Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYREPEIETRGKGAEVQGRTPRRLHTRTVQRKGKVA*
Ga0079221_101392062	3300006804	Agricultural Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGERTEVPDMIPRRLHTRTVQRKRKVA*
Ga0075425_1006183782	3300006854	Populus Rhizosphere	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYREPEIETTGKRAEVQGRTPRRLHTRTVQRKGKVA*
Ga0102924_100385712	3300007982	Iron-Sulfur Acid Spring	MSGFFLAALSLAPLGVFLLFWRMFPRDRGIHPIYRESGIETIEKRTEVKDAAERRPPIIGEVERNGKVA*
Ga0066709_1001186713	3300009137	Grasslands Soil	MFDFFLAALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKREVERKCKVA*
Ga0154000_11007202	3300012083	Attine Ant Fungus Gardens	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKKTKVPDITPRRLHTRTVQRNGKVA*
Ga0137419_100225662	3300012925	Vadose Zone Soil	MFDFFLGALSLAPVGLFLLFWRMFPPDRSVHPIYRESGIEMIENGTEVQDAIARRLHMRELERKGKVA*
Ga0137416_100113483	3300012927	Vadose Zone Soil	MFDFFLGALSLAPVGLFLLFWRMFPPDRGVHPIYRESGIEMIENGTEVQDAIARRLHMRELERKGKVA*
Ga0137410_108089002	3300012944	Vadose Zone Soil	MFDFFLGALSLAPVGLFLLFWRMFPPDRSVHPIYRESGIEMIDNGTEVQDAIARRLHMREVERKGKVA*
Ga0210407_1000379913	3300020579	Soil	MFILDFFLAALSLAPVGLFLLFWKMFPRDRGVHPIYRESGAEMIDSGTEVQDATARRLQMRKGERKGKVA
Ga0210407_100071688	3300020579	Soil	MFDLLLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEVPDMTPRRLHTRTVQRKGKVA
Ga0210407_100430595	3300020579	Soil	MFDFLLLGLSLAPLGLLLFFWRVFPRDRGIHPIYRESEIETTGKRTEVPDTCRTIRP
Ga0210407_102179672	3300020579	Soil	MLDFFLAALSLAPVGLFLLFWKMFPRDRGVYPIYRESAIEMIDNGTGARETARRLHKSEVEHKCEAA
Ga0210407_104081802	3300020579	Soil	MFDFFLAALTLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKRERLSANGKTA
Ga0210403_101184383	3300020580	Soil	MSMFDFFVAVLSLAPLGLFLVFWTMFPRDRGVHPIYRESGIEMIDNGTEVLDATARRPQMKKIERKGKAA
Ga0210403_101548493	3300020580	Soil	MSIFDFFLGALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMPARRLHMKEVGRKCKVS
Ga0210403_102165262	3300020580	Soil	MSMFDFFLVALSLAPVGLFLLIWRMFPRDRGVHPIYRESGIEMICNGPEVQDATARRPQMRKVERKGEVA
Ga0210403_109034421	3300020580	Soil	MCDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIETTGKRTEVQDMIPWRPNTRTVQ
Ga0210399_109999232	3300020581	Soil	HGDETSMFDFFLAALSLAPVGLLLLFWRMFPRDRGVHPIYRESGIEMIDNGTEVEDATAGRPQLRKVERKGKVG
Ga0210395_101628251	3300020582	Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEVPDITPRRLHTRTVQRKGKVA
Ga0210401_100379505	3300020583	Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIETTGKRTEVPDMTPRRLHTRTVQRKGKVA
Ga0210401_103151732	3300020583	Soil	MSMFDLFLAALSLAPVGLFLLFWRMFPRDRGVHPIYRESGIETMDNGTEVQDATARRPQMRTVERKGKVG
Ga0210401_103156161	3300020583	Soil	PVGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKREVERKCKVA
Ga0210401_104957291	3300020583	Soil	LFWRMFPRDRGVHPIYRGSGIEMIDNGTGVQDMTAPRLHKREVERKWKAA
Ga0210401_109073542	3300020583	Soil	MFDFFLAALSLAPVGLFLLFWRMFPRDRGVHPIYRKSGIEMIDNGTRVQDMTARGLHKRLKANAKQLEH
Ga0210404_1000024512	3300021088	Soil	MSMFDFFLGALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIGNGTGVQDMTAEAAQETG
Ga0210404_106006401	3300021088	Soil	TLRELCGIRVAREKVVFVVRSTWSEISMFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYREPEIETTGKRAEVQDTTPRRLHTRTVQRKGKVA
Ga0210406_100162142	3300021168	Soil	MSMLDFFLAALSLAPVGLFLLFWKMFPRDRGVHPIYRESAIEMIDNGTGARETARRLHKSEVEHKCEAA
Ga0210406_101649263	3300021168	Soil	MSMFDLFLAALSLAPVGLFLLFWRMFPRDRGVHPIYRESGIETMDNGTEVQDATARRPQMRTIERKGKVG
Ga0210405_100171467	3300021171	Soil	MSMFDFFLVALSLAPVGLFLLIWKMFPRDRGVHPNYRESGIEMICNGPEVQDATARRPQMRKVERKGKVA
Ga0210396_1000555918	3300021180	Soil	TAMCDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIEPTGKRTEVQDMIPRRPITRTVQRKDKVA
Ga0210396_100895233	3300021180	Soil	MCDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIETTGKRTEVEDMTPRRLYTRTVQRKGKVA
Ga0210389_107029742	3300021404	Soil	MSMLDFFSAALSLAPVGLFLLFWKMFPRDRGVHPIYRESAIEMIDNGTGARETARRLHKSEVEHKCEAA
Ga0210394_112222892	3300021420	Soil	MSMFDFFLVALSLAPVGLFLLIWRMFPRDRGVHPIYRESGIEMICNGPEVQEATARRPQMRKVERKGEVA
Ga0210384_103434892	3300021432	Soil	MSIFDFLLAALSLAPVGLFLLFWRMFPRDRGVHPIYRESGIEMIDSGTEVQDATARRPQLRKVERKAKGLEQ
Ga0210384_104094911	3300021432	Soil	DLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIETTGKRTEVPDMTPRRLHTRTVQRKGKVA
Ga0210384_112061152	3300021432	Soil	MSIFDFFLAAFSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTAPRLHKREVEPKWKAA
Ga0210391_109871221	3300021433	Soil	MSMFDFFLAALSLAPVGLFLLIWRMFPRDRGVHPIYRESGIEMICNGPEVQDATARRPQMRKVERKGEVA
Ga0210390_105278412	3300021474	Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTDVHPIYRESEIETTGKRTEVPDMTPRRLHTRTVQRKGKVA
Ga0210392_106381201	3300021475	Soil	LDFFLAALSLAPVGLFLLFWKMFPRDRGVHPIYRESAIEMIDNGTGARETARRLHKSEVEHKCEAA
Ga0210410_100128178	3300021479	Soil	MSMFDLFLAALSLAPVGLFLLFWRMFPRDRGVHPIYRESGIEAMDNGTEVQDATARRPQMRTVERKGKVG
Ga0210410_100599753	3300021479	Soil	MSMLDFFLAALSLAPVGLFLLFWRMFPRDRGVHPIYRKSAIEMIDNGTRAQETARRLHKREVERKCEAA
Ga0210409_100816892	3300021559	Soil	MSMVDFFLAALSLAPVGLFLLFWRMFPRDRGVHPIYRESGNETIDNGTEVQDMTARGLQRRLRADAKQLEH
Ga0210409_101763943	3300021559	Soil	MFDFFLAALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARSLHKREVERKWKAA
Ga0210409_112057502	3300021559	Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDSSVHPIYQESEIETTGKRTEVQDMTLQRLHTRTVQRKGKVA
Ga0212123_1001012910	3300022557	Iron-Sulfur Acid Spring	MSGFFLAALSLAPLGVFLLFWRMFPRDRGIHPIYRESGIETIEKRTEVKDAAERRPPIIGEVERNGKVA
Ga0207693_106212452	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESELETTGKRTKVPDMTPRRPHTRTVQRKGKVA
Ga0207646_101705331	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSIFDFFLAALSLASVGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGPGGPGHDRAGAAQEVESKCKTA
Ga0209131_12732912	3300026320	Grasslands Soil	MPPEFARRSAGLTSLDLHGDEMSMFHFFLAALSLAPIGLFLLFWRMFPRDRGIHPIYRESGTETIGKRTEAQDVTARRLHMKEVGRKCKVA
Ga0209803_11682102	3300026332	Soil	DFFLAALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKREVERKCKVA
Ga0209056_101757882	3300026538	Soil	MSMFDFFLAALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKREVERKCKVA
Ga0208369_10057352	3300026998	Forest Soil	MCDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEVPDMTPRRLHTRTVQRKGKVA
Ga0209325_10000205	3300027050	Forest Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYREPEIETMGKGAEVQGRTPRRLHTRTVQRKGKVA
Ga0208365_10412332	3300027070	Forest Soil	MSMLDFFLGVISLAPVGLFLLFWRMFPHDRGIHPIYRESGTETIGERTESLSVTALRLHMKEVGRKCKVA
Ga0209214_10021972	3300027071	Forest Soil	MCDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETMGKGAEVQGRTPRRLHTRTVQRKGKVA
Ga0208603_10050382	3300027109	Forest Soil	MSMFDFLLAALSLAPVGLFLLLWRIFPRDRGLHPIYRESGTETMGERTESQDVTPRRLHMKEVERKCKVA
Ga0208368_1066361	3300027161	Forest Soil	KVVFVVRSTWSETAMCDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIETTGKRTEVQDMIPWRPNTRTVQRKDKVA
Ga0209731_10021511	3300027326	Forest Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEVPDMTPR
Ga0209418_10041612	3300027371	Forest Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYREAEIETTGKKTKVPDMTPRRLYTSTVQRNGKVA
Ga0209622_10089652	3300027502	Forest Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEVPDMTPRRLHTRTVQRNGKVA
Ga0209622_10951261	3300027502	Forest Soil	LAPPFTREKVVFVVRSTWSETAMCDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIEPTGKRTEVQDMIPRRPITRTVQRKDKVA
Ga0209523_11075742	3300027548	Forest Soil	LRELCGIGALVTRETVAFVIRFTWSEMPMFDLFLAALSLAPLGLFLLFWRVFPRDTGAHLIYRESDIETTGKKTEVPDMTPRRLHARTVQRNGKVA
Ga0209003_10205162	3300027576	Forest Soil	MCDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIEPTGKRTEVQDMIPRRPNTRTAQRKDKVA
Ga0209527_10450252	3300027583	Forest Soil	MCDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKKTEVQDMIPRRPNTRTVQCKDKVA
Ga0209655_100023847	3300027767	Bog Forest Soil	MFGFFLAALSLAPLGVFLLFWRMFPRDHGIHPIYRESGIETIEKRTEVKDAAVRRPPIGEVEPNGKVA
Ga0209139_100429142	3300027795	Bog Forest Soil	MFGFFLAALSLAPLGVFLLFWRMFPRDRGIHPIYRESGIETIEKRTEVKDAAARRPPIGEVEPNGQVA
Ga0209060_103165432	3300027826	Surface Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEGPGITPRRLHTRTVQRKDKVA
Ga0209167_100090741	3300027867	Surface Soil	MSMFDFFLAALSLAPLGLFLLFWRMFPRDRGIHPIYRDAEIEMRDNGTGAQETARRLHKSEIERNCKAA
Ga0209167_106885032	3300027867	Surface Soil	MSMFDFFLAALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIETIDSGTGTQESARRLQKREVERKCKAA
Ga0209168_101109722	3300027986	Surface Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEVEDMTPRRLYTRTVQRNGKVA
Ga0137415_100157143	3300028536	Vadose Zone Soil	MSMFDFFLGALSLAPVGLFLLFWRMFPPDRSVHPIYRESGIEMIENGTEVQDAIARRLHMRELERKGKVA
Ga0222749_100002213	3300029636	Soil	MCDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIETTGKRTEVQDMIPWRPNTRTVQRKDKVA
Ga0222749_101425801	3300029636	Soil	MFDLFLAALSLAPVGLFLLFWRMFPRDRGVHPIYRESGIELIGNGTGVQDMTARRLHKRQVERTCKA
Ga0307482_12880341	3300030730	Hardwood Forest Soil	MFDLFLAALSLAPLGLFLLLWRVFPRDSSVHPIYRESEIETMGKRIEVQDMTLRRL
Ga0170834_1079727331	3300031057	Forest Soil	RSFDPHGDEISMFDFFLAVLSLAPPGLFLLFWRMFPRDRGIHPIYRESVIEMIDNATGVQDIAAPRLHKKDVERKCKAA
Ga0307476_1000012251	3300031715	Hardwood Forest Soil	MFDLFLAALSLAPLGLFLLLWRVFPRDSSVHPIYRESEIETMGKRIEVQDMTLRRLHTRRVQRKGKVT
Ga0307476_1000084710	3300031715	Hardwood Forest Soil	MPIFDFFLAALSLAPVGLFLLFWRIFPRDRGIHPIYRESGTETRGERTESQDVTARRLHMKEVGRKCKIA
Ga0307476_104853772	3300031715	Hardwood Forest Soil	MFDFFLGALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGAQDMTARRLHKTEVERKCKAA
Ga0307476_105356231	3300031715	Hardwood Forest Soil	MSRFDFFLAALSLAPLGLFLVFWRMFPRDRGVHPIYRKSRFEMMGNETGVQDMTARRLQMKEVERKCKAA
Ga0307476_106935442	3300031715	Hardwood Forest Soil	MSMFDFFLVALSLAPVGLFLLIWRVFPRDRGVHPIYRESGIEMICNGPEVQDATARRPQMRKVERKGKVA
Ga0307474_100037326	3300031718	Hardwood Forest Soil	MSRFDFFLAALSLAPLGLFLVFWRMFPRDRGVHPIYRKSRIEMMGNETGVQDMTARRLQMKEVERKCKAA
Ga0307474_102108651	3300031718	Hardwood Forest Soil	ALSLAPLGLLLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKTEVERKCKA
Ga0307477_105558962	3300031753	Hardwood Forest Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESELETTGKGAKVSDMTPRRLHTRTVQRKGKVA
Ga0307477_106407241	3300031753	Hardwood Forest Soil	MCDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIEAAGKRTEVADMTPRRLHTRTVQRKGKVA
Ga0307477_107274481	3300031753	Hardwood Forest Soil	LRELCGIRVTREKVVFVVRFTWSEMSMFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEVPDMTPRRPHTRTVQRKGKVA
Ga0307477_110011951	3300031753	Hardwood Forest Soil	MFDFFLAALSLAPLGLLLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKREVERKWKAA
Ga0307475_102443112	3300031754	Hardwood Forest Soil	MSMVDFFLGALSLAPLGLFLLFWRMFPRDRGIHPIYRESATEMIGERIKSPAVTARRLHTKEVGRKCEVA
Ga0307475_102484202	3300031754	Hardwood Forest Soil	MSMFDFFLAALSLAPLGLFLLFWRMFPRDRGIHPIYRESGTETIGKRTESQDVTARRLHKREVERKCKAA
Ga0307475_103045653	3300031754	Hardwood Forest Soil	GDDMSRFDFFLAALSLAPLGLFLVFWRMFPRDRGVHPIYRKSRIEMMGNETGVQDMTARRLQMKEVERKCKAA
Ga0307475_105853891	3300031754	Hardwood Forest Soil	IFDFLLAALSLVPLGLFLLFWRMFPRDRGVHPIYRESGIEMTDNGTGVQDMTARRLHKTEVERKCKAA
Ga0307475_106305572	3300031754	Hardwood Forest Soil	MSIFDFLLAALSLAQVGLFLLFWRMFPRDRGVHPIYRESGNEMIDNGTGVQDMTARGLQKRLKADAKQLEH
Ga0307475_111590441	3300031754	Hardwood Forest Soil	MSIFDFLLAALSLAPVGLFLLFWRMFPRDRGVHPIYRGSGIEMINNGTGVQDMTARGLHKRLKANAKQLEH
Ga0307478_105341532	3300031823	Hardwood Forest Soil	MSIFDFLLAALSLAPVGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGTGVQDMTARRLHKREVERKWKAA
Ga0307479_104368892	3300031962	Hardwood Forest Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYRESEIETTGKRTEVPDMTPRRLHTRTVQRKGKVA
Ga0307479_113534491	3300031962	Hardwood Forest Soil	MFDLFVAALSLAPLGLFLLFWRVFPRDSSVHPIYRESEIETMDKGTEVKDMTLQRLHT
Ga0307470_100058113	3300032174	Hardwood Forest Soil	MSMFDFFVAALSLAPFGLLLLFWRMFPRDGCIHPIYRESGIEVIENGTEVQDATTRRSQVRKVEHKGKVA
Ga0307470_101247443	3300032174	Hardwood Forest Soil	TVFVVRSTWSEMSMFDLFLAALSLAPLGLFLLFWRVFPRDTAVHPIYREPEIETMGKGAEVQGRTPRRLHTRTVQRKGKVA
Ga0307470_102751262	3300032174	Hardwood Forest Soil	MFDLFLAALSLAPLGLFLLFWRVFPRDSAVHPIYRESEIETTGKRTEVQEMTPRRLHTRTVQRKGKVA
Ga0307471_1000564492	3300032180	Hardwood Forest Soil	MSMFDFLLAALSLAPVGLFLLFWRMFPRDRGVHPIYRESGIEMIDNGNEVQEATARRPQMRKVERKGKVA
Ga0307471_1026171592	3300032180	Hardwood Forest Soil	MFDFLLLGLSLAPLGLLLFFWTVFPKDRGIHPIYRESEIETTGKRTEVPDMTSRRLHTRTVQRKGKVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080279

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences