NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F079906

Metagenome Family F079906

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079906
Family Type Metagenome
Number of Sequences 115
Average Sequence Length 43 residues
Representative Sequence RRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ
Number of Associated Samples 100
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.74 %
% of genes near scaffold ends (potentially truncated) 97.39 %
% of genes from short scaffolds (< 2000 bps) 91.30 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (74.783 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(25.217 % of family members)
Environment Ontology (ENVO) Unclassified
(28.696 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.913 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70
1INPhiseqgaiiFebDRAFT_1010956082
2Ga0062384_1013967141
3Ga0062389_1037214571
4Ga0062386_1013067713
5Ga0062595_1002144512
6Ga0066672_103493662
7Ga0066679_110163222
8Ga0066388_1059191421
9Ga0070662_1009801251
10Ga0073909_104780421
11Ga0070697_1012707712
12Ga0066692_106296671
13Ga0066703_106802301
14Ga0066708_107371581
15Ga0066706_107092021
16Ga0070763_105508123
17Ga0070766_110594891
18Ga0081540_11218411
19Ga0079222_123466581
20Ga0066659_104371792
21Ga0066660_104861271
22Ga0073928_105666762
23Ga0099794_100434633
24Ga0099795_104582862
25Ga0099829_113001173
26Ga0099792_109330751
27Ga0134065_103841291
28Ga0134111_103278373
29Ga0134062_103240331
30Ga0126370_104586661
31Ga0126370_116190731
32Ga0126378_105367511
33Ga0126377_135062312
34Ga0126381_1011520381
35Ga0126383_103359861
36Ga0150983_142025531
37Ga0137392_103755951
38Ga0137392_115869641
39Ga0137391_101500521
40Ga0137389_113556942
41Ga0137389_115744072
42Ga0137388_106929901
43Ga0137388_107286322
44Ga0137388_111233552
45Ga0137363_107584751
46Ga0137399_114261213
47Ga0137362_104990613
48Ga0137362_105735634
49Ga0137362_109769491
50Ga0137360_108455481
51Ga0137361_114394552
52Ga0137390_104466501
53Ga0137397_104108523
54Ga0137359_106965343
55Ga0137413_115837463
56Ga0137413_118136052
57Ga0137416_120170622
58Ga0134110_104246312
59Ga0137411_11979071
60Ga0137412_100340287
61Ga0187825_101260651
62Ga0187821_105076201
63Ga0193718_10917902
64Ga0210407_103069373
65Ga0210399_110838042
66Ga0210401_111194182
67Ga0215015_106715481
68Ga0210404_104656141
69Ga0210404_106870713
70Ga0210406_110043031
71Ga0210400_100936723
72Ga0210400_110746483
73Ga0210405_113787032
74Ga0210393_106238171
75Ga0210389_100467505
76Ga0210389_114067271
77Ga0210387_101776791
78Ga0210386_107470773
79Ga0210384_102281221
80Ga0210384_116660861
81Ga0210390_112857381
82Ga0126371_139093611
83Ga0247664_10510503
84Ga0207664_116653652
85Ga0209863_101529782
86Ga0179587_102658261
87Ga0209736_10683252
88Ga0209530_10343253
89Ga0209581_11264781
90Ga0209178_10025127
91Ga0209178_10344061
92Ga0209328_101914541
93Ga0209038_101829953
94Ga0209167_107576421
95Ga0209283_103345711
96Ga0308309_114267143
97Ga0302310_101859441
98Ga0318542_100115181
99Ga0307476_111895431
100Ga0307474_103032921
101Ga0307475_107163542
102Ga0307475_108288751
103Ga0318509_104675701
104Ga0307473_108472321
105Ga0307478_100160877
106Ga0318564_101934183
107Ga0310910_100244251
108Ga0307479_107574312
109Ga0318505_100710871
110Ga0306924_121061001
111Ga0307471_1030551071
112Ga0306920_1014256892
113Ga0306920_1015072821
114Ga0335079_100370413
115Ga0335072_105735001
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 22.86%    β-sheet: 0.00%    Coil/Unstructured: 77.14%
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Variant

510152025303540RRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
74.8%25.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Bog Forest Soil
Freshwater Sediment
Iron-Sulfur Acid Spring
Soil
Vadose Zone Soil
Tropical Forest Soil
Grasslands Soil
Surface Soil
Soil
Agricultural Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Prmafrost Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Palsa
Tabebuia Heterophylla Rhizosphere
Corn Rhizosphere
3.5%25.2%6.1%3.5%7.8%20.0%7.0%3.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10109560823300000364SoilETLELACGHYSLELAPFSXIAGYRMLTYLRSALA*
Ga0062384_10139671413300004082Bog Forest SoilRHGANPRTLELPCGHYSLELPVFSYLAGYRMLSFFRTTLA*
Ga0062389_10372145713300004092Bog Forest SoilRNGAAPKTVELHCGHYSLELAPFSYIAGYRMLTFLRSSLV*
Ga0062386_10130677133300004152Bog Forest SoilLEALRRHGAPPKTVELHCGHYSLELAPFSYVAGYRMLTFLRSSLV*
Ga0062595_10021445123300004479SoilSRQMLDALRRHGAHPRSLQLHCGHYSLELAPFSYIAGYRVLAFLRAALGH*
Ga0066672_1034936623300005167SoilDSLRRNGASPHTLGLHCGHYSLELAPFSYIAGYRMLAFLRGALSAR*
Ga0066679_1101632223300005176SoilEQMLEALRRHTPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0066388_10591914213300005332Tropical Forest SoilENGASPKTLELACGHYSLELAPFSYIAGYRMLTYLRSALA*
Ga0070662_10098012513300005457Corn RhizosphereRRHGAHPRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAKG*
Ga0073909_1047804213300005526Surface SoilHQPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0070697_10127077123300005536Corn, Switchgrass And Miscanthus RhizosphereRHGAHPRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAKG*
Ga0066692_1062966713300005555SoilHGANPKTLELSCGHYSLELAPFSYIAGIRMLRFLKGALA*
Ga0066703_1068023013300005568SoilLTEQMLEALRRHTPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0066708_1073715813300005576SoilGANPRTLELPCGHYSLELRPFSYIAGYRMLTYLKSALV*
Ga0066706_1070920213300005598SoilRQMLDSLRRHGAAPRTLGLHCGHYSLELFPFSYIAGYRMLTFLRGALSS*
Ga0070763_1055081233300005610SoilTAQMLAALRQHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0070766_1105948913300005921SoilPRSLELHCGHYSLELAPFSYIAGYRMLSFLRSALA*
Ga0081540_112184113300005983Tabebuia Heterophylla RhizosphereDALHAHGANPRTLELPCGHYSLELKPFSYVAGYRMLTYLRSALA*
Ga0079222_1234665813300006755Agricultural SoilHNANPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALA*
Ga0066659_1043717923300006797SoilSLRRHGAAPRTLGLHCGHYSLELFPFSYIAGYRMLTFLRGALSS*
Ga0066660_1048612713300006800SoilQMLDSLRRHGARPRTLALRCGHYSLELFPFSYVAGYRMLAFLRGALSSSG*
Ga0073928_1056667623300006893Iron-Sulfur Acid SpringRRHGSNPRVLELACGHYSLELRPFSYIAGYRMLSFFRRALS*
Ga0099794_1004346333300007265Vadose Zone SoilAALRRHNANPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALA*
Ga0099795_1045828623300007788Vadose Zone SoilALHEHGASPRTLELPCGHYSLELRPFSYIAGYRMLTYLKSALA*
Ga0099829_1130011733300009038Vadose Zone SoilAAPRTLQFHCGHYSLELFPFSYVAGYLMLSFFRSALG*
Ga0099792_1093307513300009143Vadose Zone SoilLTEQMLAALRRYHPHPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA*
Ga0134065_1038412913300010326Grasslands SoilSPHTLGLHCGHYSLELAPFSYIAGYRMLAFLRGALSAR*
Ga0134111_1032783733300010329Grasslands SoilAPRTLALHCGHYSLELAPFSYIAGYRMLSFFRSALT*
Ga0134062_1032403313300010337Grasslands SoilNGASPHTLGLHCGHYSLELAPFSYIAGYRMLAFLRGALSAR*
Ga0126370_1045866613300010358Tropical Forest SoilAPRTLALHCGHYSLELPLFSHIAGYRMLTFLRDALA*
Ga0126370_1161907313300010358Tropical Forest SoilGASPRTLELPCGHYSLELAPFSYIAGYRMLTFLRSALA*
Ga0126378_1053675113300010361Tropical Forest SoilRQMLDSLRRHGATPRTLALHCGHYSLELFPFSYVAGYRMLSFLRYALSA*
Ga0126377_1350623123300010362Tropical Forest SoilDALNEHGANPRTLQLPCGHYSLELAPFSYIAGYRMLTFLRSALA*
Ga0126381_10115203813300010376Tropical Forest SoilNGAKPRTLELHCGHYSLELAPFSYVAGYRMLRFLKSALA*
Ga0126383_1033598613300010398Tropical Forest SoilQMLDSLCRHGARPRTLALHCGHYSLELFPFSYLAGYRMLAFLRGALSRPV*
Ga0150983_1420255313300011120Forest SoilEQMLTALRRYTPHPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALAQVQLALSN*
Ga0137392_1037559513300011269Vadose Zone SoilPRTLALHCGHYSLELAPFSYIAGYRMLSFFRSALA*
Ga0137392_1158696413300011269Vadose Zone SoilPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0137391_1015005213300011270Vadose Zone SoilLRRHNANPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA*
Ga0137389_1135569423300012096Vadose Zone SoilMLAALRRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0137389_1157440723300012096Vadose Zone SoilAHPRTLRLPCGHYSLELAPFSYLAGYNMLSFFRSALAS*
Ga0137388_1069299013300012189Vadose Zone SoilRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA*
Ga0137388_1072863223300012189Vadose Zone SoilRRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0137388_1112335523300012189Vadose Zone SoilAALRRHNAHPRTLALHCGHYSLELPPFSHIAGFRMLTFLRQALA*
Ga0137363_1075847513300012202Vadose Zone SoilNMVEALHEHGANPRTLELPCGHYSLELMPFSYIAGYRMLTYLRSALR*
Ga0137399_1142612133300012203Vadose Zone SoilMLAALRRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALA*
Ga0137362_1049906133300012205Vadose Zone SoilRHKPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLREALAQ*
Ga0137362_1057356343300012205Vadose Zone SoilAALRKHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0137362_1097694913300012205Vadose Zone SoilHGGHPRTLALHCGHYSLELFPFSYIAGYCMLSFLRSALAQ*
Ga0137360_1084554813300012361Vadose Zone SoilPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA*
Ga0137361_1143945523300012362Vadose Zone SoilALHEHGANPRTLELPCDRDSLELGAFSYIAGYRMLTYLRSVLA*
Ga0137390_1044665013300012363Vadose Zone SoilTALRRHNPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALA*
Ga0137397_1041085233300012685Vadose Zone SoilLTALTEQMLAALRRHKPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLREALAQ*
Ga0137359_1069653433300012923Vadose Zone SoilLRRHNAHPRTLALHCGHYSLELPPFSHIAGFRMLTFLRSALA*
Ga0137413_1158374633300012924Vadose Zone SoilTAQMVAALRKHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0137413_1181360523300012924Vadose Zone SoilKPYPRTLALHCGHYSLELPPFSHIAGYRMLSFLRQALA*
Ga0137416_1201706223300012927Vadose Zone SoilVFRKYDFTFVPALSEQTLTALPRHKPPPSTLTVHCGHYSLKLPPFSHISCYRMLPFFRQALA*
Ga0134110_1042463123300012975Grasslands SoilPHTLGLHCGHYSLELAPFSYIAGYRMLAFLRGALS*
Ga0137411_119790713300015052Vadose Zone SoilELTLEMVDALREHGANPRTLELPCGHYSLELGPFSYIAGYRMLTYLRSVLA*
Ga0137412_1003402873300015242Vadose Zone SoilKPYPRTLALHCGHYSLELPPFSHIAGYRMLTFLREALAQ*
Ga0187825_1012606513300017930Freshwater SedimentGAHPRTLRLPCGHYSLELAPFSYLAGYNMLSFFRSALA
Ga0187821_1050762013300017936Freshwater SedimentMLDSLRRHGAHPRSLQLHCGHYSLELPPFRYIAGYRVLSFLRSALA
Ga0193718_109179023300019999SoilHGANPRTLELPCGHYSLELVPFSYIAGYRMLRYLRSALR
Ga0210407_1030693733300020579SoilRRHGAKPRSMELHCGHYSLELAPFSYIAGYRMLTFLRSALAQ
Ga0210399_1108380423300020581SoilALRRHGAHPRSLELSCGHYSLELPPFSYIAGYSVLSFLRSALA
Ga0210401_1111941823300020583SoilDSLRRHGAHPRVLELACGHYSLELPFFSYIAGYRMLSYLRSALA
Ga0215015_1067154813300021046SoilMVEALHEHGANPRTLELPCGHYSLELMPFSYIAGYRMLTYLRSALR
Ga0210404_1046561413300021088SoilEQMLAALRLHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFFRQALAQ
Ga0210404_1068707133300021088SoilTEQMLTALRRYTPHPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA
Ga0210406_1100430313300021168SoilLPELTAQMLAALRQHHANLRTLELHCGHYSLELPGFSHIAGYRMLTFLRSALAQ
Ga0210400_1009367233300021170SoilEQMLAALRRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALAQ
Ga0210400_1107464833300021170SoilTALRRYTPHPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA
Ga0210405_1137870323300021171SoilLRRHGAHPRTLRLPCGHYSLELAPFSYLAGYNMLSFFRSALA
Ga0210393_1062381713300021401SoilMLAALRRHGASPRSLELYCGHYSLELAPFSYIAGYRMLSFLRSALA
Ga0210389_1004675053300021404SoilSHGAHPRSLELHCGHYSLELAPFSYIAGYRVLAFLRSALG
Ga0210389_1140672713300021404SoilLTAQMLAALHQHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALA
Ga0210387_1017767913300021405SoilRSMQLHCGHYSLELPPFSYVAGYRVLSFLRSALAH
Ga0210386_1074707733300021406SoilHGARPRSLELHCGHYSLELAPFSYIAGYRVLAFLRSALG
Ga0210384_1022812213300021432SoilANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRGALAQ
Ga0210384_1166608613300021432SoilAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALAQ
Ga0210390_1128573813300021474SoilNEAAPRTLELHCGHYSLELAPFSYVAGYRMLTYLRSTLLAR
Ga0126371_1390936113300021560Tropical Forest SoilREHGAAPKTLQLACGHYSLELAPFSYIAGYRMLTYLRSALA
Ga0247664_105105033300024232SoilPKTLELACGHYSLELAPFSYIAGYRMLSYLRSALA
Ga0207664_1166536523300025929Agricultural SoilGANPRTLELPCGHYSLELVPFNYIAGYRMLTYLRSALR
Ga0209863_1015297823300026281Prmafrost SoilRTGAPPRTLELHCGHYSLELSPFSYIAGYQMLTFLRNSLTNGAIRP
Ga0179587_1026582613300026557Vadose Zone SoilTALRRHTPHPRTLALHCGHYSLELPPFSHIAGYRMLSFLRQALA
Ga0209736_106832523300027660Forest SoilPRVLELACGHYSLELRPFSYIAGYQMLSFFRRALGNSR
Ga0209530_103432533300027692Forest SoilTPRTLELHCGHYSLELAPFSHVAGYRMLTYLRSTLLAR
Ga0209581_112647813300027706Surface SoilLPCGHYSLELAPFSYIAGYRMLSFFRSALIPKSQLA
Ga0209178_100251273300027725Agricultural SoilHGATPRTLGLHCGHYSLELAPFSYIAGYRMLAFLRSALSQ
Ga0209178_103440613300027725Agricultural SoilHGAHPRTLELPCGHYSLELAPFSYIAGYRMLSFLRSTLSRDSTS
Ga0209328_1019145413300027727Forest SoilRRHDANLRTLELACGHYSLELPPFSHIAGYRMLTFLHSALAQ
Ga0209038_1018299533300027737Bog Forest SoilQHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAQ
Ga0209167_1075764213300027867Surface SoilPELTAQMLAALRQHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAQ
Ga0209283_1033457113300027875Vadose Zone SoilMLAALRRYTPHPRTLALHCGHYSLELPPFSHIAGYRMLSFLRSVLAQ
Ga0308309_1142671433300028906SoilTVELHCGHYSLELAPFSHIAGYKMLTYLRSTLLAG
Ga0302310_1018594413300030737PalsaLRRTGASPRTLELHCGHYSLELSPFSYIAGYRMLTFLRSSLMSSAAHS
Ga0318542_1001151813300031668SoilPKTLELACGHYSLELAPFSYIAGYRMLTYLRSALA
Ga0307476_1118954313300031715Hardwood Forest SoilTHPRSLQLHCGHYSLELPPFSYIAGYRVLSFLRSALAA
Ga0307474_1030329213300031718Hardwood Forest SoilDSLRRHGAHPRSLQLHCGHYSLELPPFSYIAGYRVLSFLRSALAA
Ga0307475_1071635423300031754Hardwood Forest SoilALRRYKPHPRTLALHCGHYSLELPPFSHIAGYRMLSFLRQALT
Ga0307475_1082887513300031754Hardwood Forest SoilYKPHPRTLALHCGHYSLELPPFSHIAGYRMLSFLRQALA
Ga0318509_1046757013300031768SoilADPQTLELACGHYSLELAPFSYIAGIKMLGFLRSALS
Ga0307473_1084723213300031820Hardwood Forest SoilAFTEQMLAALRRHNANPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ
Ga0307478_1001608773300031823Hardwood Forest SoilVEALHEHGANPRTLELPCGHYSLELMPFSYIAGYRMLTYLRSALR
Ga0318564_1019341833300031831SoilREHGAAPKTLELACGHYSLELAPFSYIAGYRMLTYLRSALA
Ga0310910_1002442513300031946SoilRPRTLALRCGHYSLELFPFSYVAGYRMLAFLRGALSGSG
Ga0307479_1075743123300031962Hardwood Forest SoilRHGANPRTLALHCGHYSLELAPFSYIAGYRMLSFFRSALA
Ga0318505_1007108713300032060SoilPRTLALRCGHYSLELFPFSYVAGYRMLAFLRGALSGSG
Ga0306924_1210610013300032076SoilGANPKTLELPCGHYSLELAPFSYVAGYRMLSYLRSALA
Ga0307471_10305510713300032180Hardwood Forest SoilMLAALRRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALAQ
Ga0306920_10142568923300032261SoilRPRTLSLHCGHYSLELPFFSHIAGYRMITFLRDALA
Ga0306920_10150728213300032261SoilQHGAAPKTLELACGHYSLELAPFSYIAGYRMLNYFRAELA
Ga0335079_1003704133300032783SoilMPKIRGADPRTLELPCGHYSLELAPFSYIAGYRMLSFFRSSLAQ
Ga0335072_1057350013300032898SoilLRRHGAKPRSLELHCGHYSLELAPFSYIAGYRVLAFLRSALA


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