Metagenome / Metatranscriptome Family F079701

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079701
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	58 residues
Representative Sequence	VKRITGLDWPLLALAGCLLALSAAGAIAVTHFDDPNVGVFLLLQCVPYAIAAWLVVRG
Number of Associated Samples	96
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.23 %
% of genes near scaffold ends (potentially truncated)	98.26 %
% of genes from short scaffolds (< 2000 bps)	86.09 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.261 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.043 % of family members)
Environment Ontology (ENVO)	Unclassified (35.652 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.957 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 47.67% β-sheet: 0.00% Coil/Unstructured: 52.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF09837	DUF2064	85.22
PF03466	LysR_substrate	4.35
PF00856	SET	2.61
PF00126	HTH_1	2.61
PF01734	Patatin	0.87
PF02518	HATPase_c	0.87
PF16861	Carbam_trans_C	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.87
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.87
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	95.65 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	33.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.00 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	6.09 %
Unclassified	root	N/A	1.74 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.87 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	6.09 %
Unclassified	root	N/A	1.74 %
Xanthobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	0.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	6.09 %
Unclassified	root	N/A	1.74 %
Xanthobacter autotrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter autotrophicus	0.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_5754_length_1405_cov_8.814946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1437	Open in IMG/M
3300000955\|JGI1027J12803_108187737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter autotrophicus	2566	Open in IMG/M
3300001867\|JGI12627J18819_10109633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1138	Open in IMG/M
3300004114\|Ga0062593_102431762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	592	Open in IMG/M
3300005332\|Ga0066388_100017637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6056	Open in IMG/M
3300005332\|Ga0066388_104493597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	710	Open in IMG/M
3300005456\|Ga0070678_101881319	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300005546\|Ga0070696_100475412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	990	Open in IMG/M
3300005553\|Ga0066695_10293524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1026	Open in IMG/M
3300005713\|Ga0066905_100612878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	923	Open in IMG/M
3300005764\|Ga0066903_100875425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1621	Open in IMG/M
3300005764\|Ga0066903_101229287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1393	Open in IMG/M
3300005764\|Ga0066903_104278210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	763	Open in IMG/M
3300005764\|Ga0066903_105965336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300005841\|Ga0068863_102170878	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300005937\|Ga0081455_11052006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300006034\|Ga0066656_10464350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	825	Open in IMG/M
3300006034\|Ga0066656_10743852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629	Open in IMG/M
3300006038\|Ga0075365_10231257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1298	Open in IMG/M
3300006046\|Ga0066652_100801325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	900	Open in IMG/M
3300006880\|Ga0075429_100918614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M
3300006903\|Ga0075426_10853642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300006914\|Ga0075436_101269449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300006954\|Ga0079219_11096630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	674	Open in IMG/M
3300007788\|Ga0099795_10051019	All Organisms → cellular organisms → Bacteria → Proteobacteria	1507	Open in IMG/M
3300009038\|Ga0099829_10022069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4390	Open in IMG/M
3300009147\|Ga0114129_12103653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
3300009792\|Ga0126374_11034641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300009792\|Ga0126374_11066458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300009792\|Ga0126374_11320210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300009840\|Ga0126313_10959047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300010043\|Ga0126380_11241780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645	Open in IMG/M
3300010043\|Ga0126380_11262408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300010335\|Ga0134063_10581658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300010360\|Ga0126372_12769939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300010362\|Ga0126377_11773913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300010366\|Ga0126379_10095828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2622	Open in IMG/M
3300010366\|Ga0126379_10879039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	998	Open in IMG/M
3300010376\|Ga0126381_103049199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	664	Open in IMG/M
3300010398\|Ga0126383_11018169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	917	Open in IMG/M
3300011106\|Ga0151489_1230709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300012199\|Ga0137383_10830461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300012199\|Ga0137383_10918211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	639	Open in IMG/M
3300012202\|Ga0137363_11702662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300012355\|Ga0137369_10174052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1688	Open in IMG/M
3300012924\|Ga0137413_10284469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1149	Open in IMG/M
3300012948\|Ga0126375_10172663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1389	Open in IMG/M
3300012948\|Ga0126375_10918814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M
3300012948\|Ga0126375_11521571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300012957\|Ga0164303_10143067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1255	Open in IMG/M
3300012960\|Ga0164301_10833495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300015357\|Ga0134072_10022170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1593	Open in IMG/M
3300015373\|Ga0132257_101462122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	871	Open in IMG/M
3300016294\|Ga0182041_11345883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300016445\|Ga0182038_11232069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	668	Open in IMG/M
3300017654\|Ga0134069_1071677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1108	Open in IMG/M
3300018465\|Ga0190269_12007509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300018468\|Ga0066662_12575586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	537	Open in IMG/M
3300019873\|Ga0193700_1030357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	888	Open in IMG/M
3300020002\|Ga0193730_1137505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	657	Open in IMG/M
3300021178\|Ga0210408_10362586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1155	Open in IMG/M
3300021377\|Ga0213874_10174299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300021953\|Ga0213880_10071696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	874	Open in IMG/M
3300025922\|Ga0207646_11745591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300026035\|Ga0207703_11998109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300026312\|Ga0209153_1318814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300026340\|Ga0257162_1037100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	607	Open in IMG/M
3300026494\|Ga0257159_1031087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	889	Open in IMG/M
3300027527\|Ga0209684_1081341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300027874\|Ga0209465_10204266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	986	Open in IMG/M
3300028708\|Ga0307295_10012440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2031	Open in IMG/M
3300028721\|Ga0307315_10182969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300028787\|Ga0307323_10265857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300031545\|Ga0318541_10159240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1241	Open in IMG/M
3300031549\|Ga0318571_10001328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4288	Open in IMG/M
3300031549\|Ga0318571_10014224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1963	Open in IMG/M
3300031682\|Ga0318560_10027843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2647	Open in IMG/M
3300031744\|Ga0306918_11335537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300031751\|Ga0318494_10659063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300031764\|Ga0318535_10418718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300031765\|Ga0318554_10048685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2316	Open in IMG/M
3300031769\|Ga0318526_10435650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300031770\|Ga0318521_10040276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2355	Open in IMG/M
3300031770\|Ga0318521_10434701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	785	Open in IMG/M
3300031777\|Ga0318543_10482643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	555	Open in IMG/M
3300031781\|Ga0318547_11080454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300031792\|Ga0318529_10057298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1692	Open in IMG/M
3300031794\|Ga0318503_10049144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1281	Open in IMG/M
3300031794\|Ga0318503_10303603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300031795\|Ga0318557_10023353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2436	Open in IMG/M
3300031819\|Ga0318568_10047377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2468	Open in IMG/M
3300031821\|Ga0318567_10065855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1905	Open in IMG/M
3300031831\|Ga0318564_10027628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2400	Open in IMG/M
3300031859\|Ga0318527_10161474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	942	Open in IMG/M
3300031859\|Ga0318527_10436324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300031860\|Ga0318495_10350815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	653	Open in IMG/M
3300031879\|Ga0306919_10186712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1533	Open in IMG/M
3300031894\|Ga0318522_10031761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1790	Open in IMG/M
3300031897\|Ga0318520_10073689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1858	Open in IMG/M
3300031897\|Ga0318520_10300095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	968	Open in IMG/M
3300031945\|Ga0310913_10860181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300031954\|Ga0306926_11845308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	685	Open in IMG/M
3300031959\|Ga0318530_10028426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1984	Open in IMG/M
3300032039\|Ga0318559_10534961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300032044\|Ga0318558_10003072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5576	Open in IMG/M
3300032044\|Ga0318558_10581588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300032055\|Ga0318575_10007711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3971	Open in IMG/M
3300032055\|Ga0318575_10065662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1700	Open in IMG/M
3300032065\|Ga0318513_10547687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300032094\|Ga0318540_10057779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1757	Open in IMG/M
3300032159\|Ga0268251_10478592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300032261\|Ga0306920_101164565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1115	Open in IMG/M
3300033290\|Ga0318519_10787716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.70%
Host-Associated	Host-Associated	11.30%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.70%
Plants	Host-Associated → Plants	11.30%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.35%
Roots	Host-Associated → Plants → Roots	1.74%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.87%
Phylloplane	Host-Associated → Plants → Phylloplane	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.52%
Loam	Environmental → Terrestrial → Soil → Loam	11.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.35%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.61%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.87%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.87%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.74%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.22%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.35%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.87%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.87%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.87%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.87%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.87%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_01836160	2140918013	Soil	VKRVAGLDWPLLALAGCLLALSVAGAATVDRFDDPKIGLFLLLQSVPYA
JGI1027J12803_1081877371	3300000955	Soil	GRMKRLTGHDWPLLALAFCLLALSLVGTIAVTEVDDPIAGVILLLQSIPYAAAAWLVV
JGI12627J18819_101096332	3300001867	Forest Soil	VKRVAGLDWPLLALAGCLLALSAAGAATVDRFDDPKIGVFLLLQSVPYAIATWLVLR
Ga0062593_1024317622	3300004114	Soil	VKRLTGLDWPILAAAACLLALTIAGATGITNFDDSNVGYVLLLQSAPYAVAAWL
Ga0066388_1000176378	3300005332	Tropical Forest Soil	VKRITGLDWPLWAAAACLLALSLAGAIWITQFDDPNAGLVALLQAPPYVLAAW
Ga0066388_1044935972	3300005332	Tropical Forest Soil	VKRITGLDWPLLTLAGCLLALSAAGAIEITHFDDPTVGVFLLLQCVPYAIAAWLVVWGRPER
Ga0070678_1018813191	3300005456	Miscanthus Rhizosphere	VKRLTGLDWPILTAAACLLALTIAGATGITHFDDANVGYVLLLQSAPYAVAAWLIVSGKPDAAG
Ga0070696_1004754122	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VKRVAGLDWPLLVLAGCLLAISAAGAATVDRFDDPKIGVFLLLQSVPYAIATW
Ga0066695_102935241	3300005553	Soil	VKRITGLDWPLLALAACLLALSAVGAIEVDHFDDPTVGMIMLLQCAPYAVASWLVVRG
Ga0066905_1006128782	3300005713	Tropical Forest Soil	VTRITGLDWPVLALAGCLLALSAVGAIEVDHFDDPAVGVIMLLQCAPYAVASWLVVHGRADRAANGR
Ga0066903_1008754253	3300005764	Tropical Forest Soil	MKRLTGLDWPLLALALCLLALSLVGATAVKEVDDPIAGVVLLLQSIPYAAAA
Ga0066903_1012292873	3300005764	Tropical Forest Soil	VKRITGLDWPVFALALCLVALTLAGAIGIKQFDDPKVGVVLLLQSVPYAAAAWLVVKGK
Ga0066903_1042782102	3300005764	Tropical Forest Soil	VKRITGLDWPLLALACCLLGLSAAGAATVNRFDDPKIGVFLLLQAVPYAIATWLVLRGAA
Ga0066903_1059653361	3300005764	Tropical Forest Soil	VKRITGLDWPLLALAGCLLALSAAGAIAITHFDDPKVGIFLLLQCVPYAIA
Ga0068863_1021708781	3300005841	Switchgrass Rhizosphere	VKRLTGLDWPILTAAACLLALTIAGATGITHFDDANVGYVLLLQSAPYAVAAWLIVSGKP
Ga0081455_110520061	3300005937	Tabebuia Heterophylla Rhizosphere	VKRITGLDWPLLALAFCLVALTLAGAIGITEFDDPKVGIVLLLQSVPYAAAAWLVVKGKPESV
Ga0066656_104643502	3300006034	Soil	VRRITGLDWPMLAVAACLLAFSVVGAIAVTHFDDRNAGTIALLQAVPYAIAAWFVVWGPQRNADSGRA
Ga0066656_107438522	3300006034	Soil	VKRNTGLEWPLLALAGCLLTLSAGGAIGVTHFDDRSVGVVLLLQAVPYAIATWLVRGSPDRV
Ga0075365_102312572	3300006038	Populus Endosphere	VKRITGLEWPLLALALCLVALTLAGAIGITQFDDPKVGVVLLLQSVPYAAA
Ga0066652_1008013252	3300006046	Soil	VRRVTGLDWPLLALGGCLLVLSAAGAIAVTQFDDPNVGVFLLLHCVPY
Ga0075429_1009186141	3300006880	Populus Rhizosphere	VKRITGLEWPLLALALCLVALTLAGAIGITQFDDPKVGVVLLLQSVPYAAAAWLVVKGKPESVTGGR
Ga0075426_108536421	3300006903	Populus Rhizosphere	VKRVTGLDWPLLALACCLLALSAAGAATVNRFDDPKIGVFLLLQAAPYAIATWFVLRSAADG
Ga0075436_1012694491	3300006914	Populus Rhizosphere	VKRVAGLDWPLLALACCLLALSAAGAATVDRFDDPKIGVFLLLQSVPYAIATWFVLRGAADGV
Ga0079219_110966301	3300006954	Agricultural Soil	VKRIVGLDWPLLAVAGCLLALSAAGAATVDHFDDPKIGVFLLLQAVPYAIATWLVL
Ga0099795_100510193	3300007788	Vadose Zone Soil	VRRITGLDWPLLALAGCLLALSAAGAIGVTHFDDPKVGIVLLLQCVPYALATWLVVWGRPDCAASGR
Ga0099829_100220695	3300009038	Vadose Zone Soil	VRRVTGLDWPLLALGGCLLVLSAAGAIAVTQFDDPNVGVVLVLQCAPYA
Ga0114129_121036532	3300009147	Populus Rhizosphere	VRRVTGLDWPLLALGGCLLVLSAAGALAVTQFDDPKVGVVLVLQCVPYAI
Ga0111538_103442093	3300009156	Populus Rhizosphere	MKRITGLDGPLLGAAACLLALTAFGAIWINAFDDPNAGVIPLLQALPYVVAFWLVSRVQREDG
Ga0126374_110346412	3300009792	Tropical Forest Soil	VKRIAGLDWPLLALAGCLLALSAAGAGTVNRFDDPEIGVFLLLQSAPYAIATWLVLRGA
Ga0126374_110664582	3300009792	Tropical Forest Soil	VKRITGLDWPLLAAAACLLALSLAGAIWITQFDDPNAGLVALLQVPPYALAVWLVGKGKESAADN
Ga0126374_113202101	3300009792	Tropical Forest Soil	VRRITGLDWPLLTLAACLLVLSAVGAIEVDHFDDPKVGIFLLLQCLPYAI
Ga0126313_109590471	3300009840	Serpentine Soil	VKRITGLDWPVLALAGCLLTLSAVGAIEIDHFDDPTVGVIMLLQCVPYAVASWLV
Ga0126380_112417802	3300010043	Tropical Forest Soil	VKRVTGLDWPLLALAGCLLALSAAGAATVNRFDDPNIGVFLLLQSVSYAIAT
Ga0126380_112624082	3300010043	Tropical Forest Soil	VKRITGLEWPLLALAFCLVALTLAGAVGITQFDVPQVGVVLLLQSVPYAAAAWLVVKGKPESV
Ga0134063_105816581	3300010335	Grasslands Soil	VKRITGLDWPLLALAGCLLVLSATGAATVNRFDDPKIGVFLLLQAVPYAIATWLVLR
Ga0126372_127699392	3300010360	Tropical Forest Soil	VKRITGLDWPLLALGGCLLALSAAGAIAITHFDDPKVGVFLLLQCVPYAIAAWLVLRGGSGGADN
Ga0126377_117739131	3300010362	Tropical Forest Soil	VRRITGLDWPLLALAACLLVLSAVGAIEVDHFDDPKVGIFLLLQCLPYAIASWLI
Ga0126379_100958281	3300010366	Tropical Forest Soil	VKRITGLDWPLLALACCLLALSAAGAATVNRFDDPKIGVFLLLQAVPYAIATWLVLRGAA
Ga0126379_108790391	3300010366	Tropical Forest Soil	VKRITGLDWPLLTLAACLLALAAGGAIGITHFDDPNVGVFLLLQCVPYAIATWLVVW
Ga0126381_1030491991	3300010376	Tropical Forest Soil	VKRITGLDWPLLTLAACLLALAAGGAIGITHFDDPNVGVFLLLQCVPYAI
Ga0126383_110181691	3300010398	Tropical Forest Soil	MKRITGLDWPLLLLAACLVALSAAGAVTINTFDDPKVGAVMLLQSLPYAVATWLVVRDGEERAASGR
Ga0151489_12307092	3300011106	Soil	VKRITGLDWPLLTLAGCLLALAAAGAIGVTHFDDPNVGVVLLLQCVPYAV
Ga0137383_108304611	3300012199	Vadose Zone Soil	VKRITGLDWPLLALAGCLLALSAVGAIEVDHFDDPTVGMIMLLQCAPYAVASWIVVRGGAERAANGRALA
Ga0137383_109182112	3300012199	Vadose Zone Soil	VRRITGLDWPLLTLAACLLALSAAGALVVNGFDDPKVGAVMLLQCIPYALATWLVVRGRAERAV
Ga0137363_117026621	3300012202	Vadose Zone Soil	VKRITGLDWPLLALAGCLLALSAAGAIGVTHFDDPKVGVFLLLQCVPYAIAT
Ga0137369_101740521	3300012355	Vadose Zone Soil	VKRITGLDWPLLALAGCLMALSAAGAIGITHFDDPKVGVFLLLQCVPYAIATWLVVWGRPES
Ga0137413_102844691	3300012924	Vadose Zone Soil	VKRLTGLNWPLWASAVCLLALSLAGAVAITHFDDPNVGFLLLLQSVPYAVAA
Ga0126375_101726631	3300012948	Tropical Forest Soil	VRRITGLDWPLLTLAACLLVLSAVGAIEVDHFDDPKVGIFLLLQCLPYAIASWLIVRG
Ga0126375_109188142	3300012948	Tropical Forest Soil	VKRITGLDWPLLALAGCLLALAAGGAIGITHFDDPNVGVFLLLQCVPYAIATWLVVWGRP
Ga0126375_115215712	3300012948	Tropical Forest Soil	VKRITGLEWPLLALAFCLVALTLAGAIGITEFDDPKVGVVLLLQSVPYAAAAWLV
Ga0164303_101430672	3300012957	Soil	VKRVAGLDWPLLALAGCLLALSAAGAATVNRFDDPKVGVFLLLQSVPYALA
Ga0164301_108334952	3300012960	Soil	VKRVAGLDWPLLALAGCLLAISAAGAATVDRFDDPKIGVFLLLQSVPYAIATWLVLRGAADGFASGRALA
Ga0134072_100221701	3300015357	Grasslands Soil	VRRITGLDWPLLTLAACLLALSAAGALVVNGFDDPKVGAVMLLQCIPYALATWLV
Ga0132257_1014621222	3300015373	Arabidopsis Rhizosphere	VKRLTGLDWPLLASAVCLLALSLAGAVAITHFDDPNVGFVLLLQSVPYAVAAWLVVRGNPDTA
Ga0182041_113458832	3300016294	Soil	VRRVTGLDWPLLALGGCLLVLSAAGAIAVTQFDDPKVGVVLLLQCVPYAIATWLVLRGG
Ga0182038_112320691	3300016445	Soil	VKRITGLDWPLLALAGCLMALSAAGAIGITHFDDPKVGVVLLLQCVPYAIATWLVVW
Ga0134069_10716771	3300017654	Grasslands Soil	VRRITGLDWPLLTLAACLLALSAAGALVVNGFDDPKVGAVMLLQCIPYALATWL
Ga0190269_120075091	3300018465	Soil	VKRITGLDWPVLALAGCLLTLSAVGAIKIDRFDDPTVGVIMLLQCAPYAVASWLVVRGEAAANGRAV
Ga0066662_125755862	3300018468	Grasslands Soil	VRRITGLDWPLLTLAACLLALSAAGALVVNGFDDPKVGAVMLLQCIPYALATWLVVR
Ga0193700_10303572	3300019873	Soil	VKRLTGLNWPLWASAVCLLALSLAGAVAITHFDDPNVGFVLLLQSVPYA
Ga0193730_11375051	3300020002	Soil	VKRLTGLDWPLWASAVCLLALSLAGAVAITHFDDPNVGFVLLLQSAPYAVAAWLVVC
Ga0210408_103625862	3300021178	Soil	VRRVTGLDWPLLALGGCLLVLSAAGAIAVTHFDDPKVGVVLLLQCVPYAIAAWLVLRGGP
Ga0213874_101742991	3300021377	Plant Roots	VKRITGLDWPLLALACCLLALSAAGAATVNRFDDPKIGVFLLLQAVPYAIATW
Ga0213880_100716961	3300021953	Exposed Rock	VKRITGLDWPLLALACCLLALSAAGAATVNRFDDPKIGVFLLLQAVPYAIATWLVLRG
Ga0207646_117455912	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VKRNTGLDWPLLALAGCLLTLSAGGAIGVTHFDDRSVGVVLLLQAVPYAIATWLVVRGSPDRAASGRAL
Ga0207703_119981091	3300026035	Switchgrass Rhizosphere	VKRLTGLDWPILAAAACLLALTIAGATGITNFDDSNVGYVLLLQSAPYAVAAWLIVSGK
Ga0209153_13188141	3300026312	Soil	VKRITGLDWPLLALAGCLLVLSATGAATVNRFDDPKIGVFLLLQAVPYA
Ga0257162_10371002	3300026340	Soil	VKRNTGLDWPLLALAGCLLTLSAGGAIGVTHFDDRRGVVLLLQAVPYAIATWFVVQG
Ga0257159_10310872	3300026494	Soil	VKRITGLDWSLLALAACLLALSAAGALAVSGFDDPKAGAVMLLQSVPYAVATW
Ga0209684_10813412	3300027527	Tropical Forest Soil	VKRITGLDWPLLALAGCLLALSAAGAIVITQFDEPNVGVFLLLQCVPYAIATWLVVWGRPDR
Ga0209527_10549851	3300027583	Forest Soil	VRRITGLDWPLLALAAGLLALTAFGAHWIITFDDPNVGLILLLHAGPYALAAWHIL
Ga0209465_102042662	3300027874	Tropical Forest Soil	MKRITGLDWPLLLLAACLVALSAAGAVTINTFDDPKVGAVMLLQSLPYAVATWLVVRDGEERAA
Ga0307295_100124401	3300028708	Soil	VKRLTGLDWPLWASAVCLLALSLAGAVAITHFDDPNVGFVLLLQSVPYAVAAWLV
Ga0307315_101829692	3300028721	Soil	VKRLTGLDWPLWASAVCLLALSLAGAVAITHFDDPNVGFVLLLQSVPYAVAAWLVVRGKP
Ga0307323_102658572	3300028787	Soil	VKRITGLDWPLLALAACLLVFSVAGAIWITHFDDPNAGLLVLLQAPPYALAAWLVLAKPDGMDS
Ga0318541_101592402	3300031545	Soil	VKRITGLDWPLLASAACLLVLSAAGALAVTHFDDPKVGVFLLLQSVPYA
Ga0318571_100013281	3300031549	Soil	VKRITGLDWPLLALAGCLIALSVAGAIGITHFDDPNVGVVLVLQCVPYAIATWLVVWG
Ga0318571_100142243	3300031549	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAVTHFDDPNVGVFLLLQCVPYAIAAWLVVRGRP
Ga0318560_100278434	3300031682	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAITQFDDPKVGIFLLLQCVPYAIAAWLVLRERA
Ga0306918_113355372	3300031744	Soil	VKRITGLDWPLLAAAACLLALSFAGAVWITQFDDPNAGLVALLQAPPYALAAW
Ga0318494_106590632	3300031751	Soil	VKRITGLDWPLLASAACLLVLSAAGALAVTHFDDPKVGVFLLLQSVPYAIATWLVVRGGE
Ga0318535_104187182	3300031764	Soil	VRRATGLDWPLLALGGCLLVLAAAGAIAVTHFDDPKVGVFLLFQCVPYAIAVWLVLRGGP
Ga0318554_100486853	3300031765	Soil	VKRITGLDWPLLALAGCLLVLSAAGAIAITQFDDPKVGIFLLLQCVPYAIAAWLVLRERA
Ga0318526_104356502	3300031769	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAVTHFDDPNVGVFLLLQCVPYAIAAWLVVRGRPERAG
Ga0318521_100402763	3300031770	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAITQFDDPKVGIFLLLQCVPYAIATWLVVWGRPDRAGSGRA
Ga0318521_104347011	3300031770	Soil	VKRITGLDWPLLASAACLLVLSAAGALAVTHFDDPKVGVFLLLQSVPY
Ga0318543_104826432	3300031777	Soil	VKRITGLDWPLLALAGCLLVLSAAGAIAITQFDDPKVGIFLLLQCVPYAIAAWLVL
Ga0318547_110804541	3300031781	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAITHFDDPKVGIFLLLQCVPYA
Ga0318529_100572981	3300031792	Soil	VKRITGLDWPLLALAGCLMALSAAGAIGITHFDDPKVGVVLLLQCVPYAIATWLVVWGRPERAGSGRA
Ga0318503_100491442	3300031794	Soil	VKRITGLDWPLLALAGCLLVLSAAGAMGITHFDDPNVGVFLLLQCVPYAIATW
Ga0318503_103036031	3300031794	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAITHFDDPKVGIFLLLQCVPYAIAAWLVVWGRP
Ga0318557_100233534	3300031795	Soil	VKRITGLDWPLLALAGCLLVLSAAGAIAITQFDDPKVGIFLLLQCVPYAIAAWLVLRERAEGA
Ga0318568_100473774	3300031819	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAITQFDDPKVGIFLLLQCVPYAIATWLVV
Ga0318567_100658553	3300031821	Soil	VRRVTGLDWLLLALGGCLLVLSAAGAIGVTHFDDPKVGVILLVQCVPYAIAAWVV
Ga0318564_100276283	3300031831	Soil	VKRITGLDWPLLALAGCLIALSVAGAIGITHFDDPNVGVVLVLQCVPYAIATWLVVWGRP
Ga0318527_101614741	3300031859	Soil	VKRITGLDWPLLALAGCLLVLSAAGAMGITHFDDPNVGVFLLLQCVPYAIATWLVVW
Ga0318527_104363241	3300031859	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAVTHFDDPNVGVFLLLQCVPYAIAAWLVVRG
Ga0318495_103508152	3300031860	Soil	VKRITGLDWPLLALAGCLLVLSAAGAMGITHFDDPNVGVFLLLQCVPYAIATWLVVWGRP
Ga0306919_101867123	3300031879	Soil	VKRITGLDWPLLALAGCLLALSAAGAIVITHFDDPNVGIFLLLQCVPYAIAAWLVVWGRPDRADG
Ga0318522_100317613	3300031894	Soil	VKRITGLDWPLLALAGCLMALSAAGAIGITHFDDPKVGVVLLLQCVPYAIATWLVVWG
Ga0318520_100736893	3300031897	Soil	VKRITGLDWPLLALAGCLLVLSAAGAMGITHFDDPNVGVFLLLQCVPYAIATWLV
Ga0318520_103000951	3300031897	Soil	VKRITGLDWPLLASAACLLVLSAAGALAVTHFDDPKVGVFLLLQSVPYAIATWLVVRGGEERAAS
Ga0310913_108601811	3300031945	Soil	VKRITGLDWPLLASAACLLVLSAAGALAVTHFDDPKVGVFLLLQSVPYAIATWLVVRGGEERAASGRA
Ga0306926_118453082	3300031954	Soil	VRRVTGLDWPLLVLGGCLLVLSAAGAIAVTQFDDPKVGVVLLLQCVPYAIAVWLVLR
Ga0318530_100284261	3300031959	Soil	VKRITGLDWPLLALAGCLLVLSAAGAIAITQFDDPKVGIFLLLQCVPYAIAAWLVLRERAEGAG
Ga0318559_105349612	3300032039	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAITHFDDPKVGIFLLLQCVPYAIAAWLVVWGRPDRAD
Ga0318558_100030726	3300032044	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAVTHFDDPNVGVFLLLQCVPYAIA
Ga0318558_105815882	3300032044	Soil	VKRITGLDWPLLALAGCLIALSVAGAIGITHFDDPNVGVVLVLQCVPYAIATWLVVWGRPESAGSGR
Ga0318575_100077115	3300032055	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAITQFDDPKVGIFLLLQCVPYAIAAWLVL
Ga0318575_100656621	3300032055	Soil	VKRITGLDWPLLALAGCLLVLSAAGAMGITHFDDPNVGVFLLLQCVPYAIATWLVVWGRPERA
Ga0318513_105476872	3300032065	Soil	VKRLTGLDWPLLLLAGCLLAGAAAGAVAISHFDDPNVGTVALTQAVPYA
Ga0318540_100577791	3300032094	Soil	VKRITGLDWPLLALAGCLLALSAAGAIAITQFDDPKVGIFLLLQCVPYA
Ga0268251_104785921	3300032159	Agave	MKRLTGLDWPLLALALCLLALSLVGAVVVRDVDDPITGVILLLQSIPYAAAAWFVVKAKP
Ga0306920_1011645652	3300032261	Soil	VKRITGLDWPLLALAGCLMALSAAGAIGITHFDDPKVGVVLLLQCVPYAIATWL
Ga0318519_107877162	3300033290	Soil	VRRATGLDWPLLALGGCLLVLAAAGAIAVTHFDDPKVGVFLLFQCVPYAIAVWLVL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079701

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences