Basic Information | |
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Family ID | F079549 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 115 |
Average Sequence Length | 43 residues |
Representative Sequence | MADWLLLRLPRADAELATWLVVDARGAPISPPQSGPLGLAAAR |
Number of Associated Samples | 99 |
Number of Associated Scaffolds | 115 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 33.91 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 92.17 % |
Associated GOLD sequencing projects | 97 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.58 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (88.696 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.913 % of family members) |
Environment Ontology (ENVO) | Unclassified (31.304 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (38.261 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 21.13% Coil/Unstructured: 78.87% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.58 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Bog Freshwater Sediment Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Bulk Soil Grasslands Soil Surface Soil Soil Grasslands Soil Soil Soil Hardwood Forest Soil Soil Tropical Peatland Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Palsa Plant Litter Corn Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Ionic Liquid And High Solid Enriched |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPIPI_01892690 | 2088090014 | Soil | MADXXXLLLRLPRADAELATWLVVDARGAPISPPQSGPLGLA |
INPgaii200_10141261 | 2228664022 | Soil | MADWLLLRLPRADAELATWLVVDARGAPISPPQSGPLGLAAAR |
Ga0070680_1012000641 | 3300005336 | Corn Rhizosphere | MADWLLLRLPRAPEQSATWLIVDLRGAPTGPPQGGPLALAAARAAG |
Ga0070688_1006492681 | 3300005365 | Switchgrass Rhizosphere | MADWLLIRLPRTAEQPATWLTVDPRGNPSGPPQSGPLSLAAPRAVG |
Ga0070684_1006213891 | 3300005535 | Corn Rhizosphere | MADWLLLRLPRDPEQPATWLVVDARGVAQGPPQSGPLSLAAPRSAGR |
Ga0070732_106579571 | 3300005542 | Surface Soil | MADWLLLRLPHAGSELATWLVVDARGAPLSPPQSGPLALAAAR |
Ga0068856_1007708881 | 3300005614 | Corn Rhizosphere | MADWLLLRLPRTPAQSATWLVVDPRGTPAGPPQSGPLSLAAPRTAGR |
Ga0070717_116646401 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MADWLLLRLPRTPDQAATWLVVDARGVAQGPPQSGP |
Ga0066710_1005187281 | 3300009012 | Grasslands Soil | MADWLLLRLPRASGEPASWLVADARGAPAGPPQDGPLTLAAPRA |
Ga0126380_116368752 | 3300010043 | Tropical Forest Soil | MADWLLLRLPRADAELATWLVVDARGAPISPPQSGPLGLAA |
Ga0099796_102218611 | 3300010159 | Vadose Zone Soil | MADWLLIRLPRTPEQAVTWLTVDPRGNPSGPPQSGPL |
Ga0126376_114893922 | 3300010359 | Tropical Forest Soil | MADWLLLRLPHAGADLATWLVVDARGAPLSPPQSGPLALAAARV |
Ga0126379_119304921 | 3300010366 | Tropical Forest Soil | MAESLLLRLPRSPEHAATWLVVDARGVPTGPPQSGPLALA |
Ga0126381_1032093531 | 3300010376 | Tropical Forest Soil | MADWLLLRLPRADAELATWLVVDSRGAPISPPQSGPLGLAAAR |
Ga0126381_1038658612 | 3300010376 | Tropical Forest Soil | MADWLLLRLPRTPEQPVSWVVVDPRGNPSGPVLSGPVSLAAPRAAG |
Ga0134126_123642701 | 3300010396 | Terrestrial Soil | MADWLLLRLPRIPDQPATWLVVDPRGVAQGPPQSGPLSLAAPRTAGRRI |
Ga0134121_130176381 | 3300010401 | Terrestrial Soil | MADWLLLRLPRIPDQPATWLVVDPRGVAQGPPQSGP |
Ga0137388_109724092 | 3300012189 | Vadose Zone Soil | MADWLLLRLPRAPEQLASWLVADARGASAGLAQAGPL |
Ga0137364_111814991 | 3300012198 | Vadose Zone Soil | MADWLLLRLPRTPDQAATWLVVDPRGVAQGPPQSGPLTLAAPRAT |
Ga0137370_110087351 | 3300012285 | Vadose Zone Soil | MADWLLLRLPRAAGEPASWLIADARGAPAGPPQSGPLTLAAARAPGRRVC |
Ga0137360_106698941 | 3300012361 | Vadose Zone Soil | MADWLLLRLPRAPEEPASWLVADVRGAPAGPPQGGPLSLAAARAA |
Ga0137395_102108011 | 3300012917 | Vadose Zone Soil | MADWLLLRLPRAPEGPASWLVADARGAPVGPPQSGPLSLAAARAAG |
Ga0137407_107319631 | 3300012930 | Vadose Zone Soil | MADWLLLRLPHAPEEPASWLVADARGAPVGPPQSGPLSLAAARAAG |
Ga0181534_103088591 | 3300014168 | Bog | VAESLLLRLPHDPQRAASWLIVDARGTPVGPPMSGPLNLAAARIGGRQ |
Ga0181531_109818722 | 3300014169 | Bog | MAETLLLRLPHGADQAPTWLIVDARGAAVGPPQSGPLNL |
Ga0137418_102131221 | 3300015241 | Vadose Zone Soil | MADWLLIRLPRTPEQPATWLTVDPRGSPSGPPQSGPLSLAA |
Ga0134072_100778862 | 3300015357 | Grasslands Soil | MADWLLLRLPRAAGEPASWLIADARGAPAGPQQSGPLTLAAARA |
Ga0182034_104902711 | 3300016371 | Soil | MSDWLLLRLPHAGAELATWLVVDARGAPLSPPQSGPL |
Ga0187824_102659081 | 3300017927 | Freshwater Sediment | MADWLLLRLPRTPDQAATWLVVDPRGVPTGPPQGGPLSLAAAR |
Ga0187821_102942592 | 3300017936 | Freshwater Sediment | MADWLLLRLPRTPEGPAAWLIASPAGAPLTATQSG |
Ga0187785_106540041 | 3300017947 | Tropical Peatland | VAETLLLRLPRAPEQLATWLVVDSGGAPTGPPQSGP |
Ga0187783_107855012 | 3300017970 | Tropical Peatland | MSDWLLLRLPRQPDQLPSWLVTDVRGAPLGPPQGGPLELAA |
Ga0187777_106426251 | 3300017974 | Tropical Peatland | MADWLLLRLPHADAELATWLVVDAHGAPLSPPQSGPL |
Ga0187777_111761762 | 3300017974 | Tropical Peatland | MADWLLLRLPREETELATWLVVDSRGAPSSPPQSG |
Ga0187823_100221743 | 3300017993 | Freshwater Sediment | MADWLLLRLPRAPEQSATWLIVDPRGAPTGPPQGGPLTLAAARAAGRRVAVLV |
Ga0187805_104630741 | 3300018007 | Freshwater Sediment | MSDWLLLRLPPSGAELATWLVVDARGAPLSPPQSGPLA |
Ga0187766_101504343 | 3300018058 | Tropical Peatland | MPDWLLLRLPRQPDQLSSWLVTDARGAPLGPPQSGPLPLAA |
Ga0187766_113901102 | 3300018058 | Tropical Peatland | MPDWLLLRLARQPDQLSSWLVTDARGAPLGPPQSGPLPLAA |
Ga0193751_12457342 | 3300019888 | Soil | MADWLLLRLPRAPELPATWLVVDSRGAPTGPPQAGPLSLATPRA |
Ga0210406_101240634 | 3300021168 | Soil | MSDWLLLRLPHADAELATWLVVDARGAPISPPQSG |
Ga0213877_101308652 | 3300021372 | Bulk Soil | MSDWLLLRLPHAGTELATWLVVDARGAPLGPAQSGPLALAAPRVPGRRV |
Ga0213877_102023462 | 3300021372 | Bulk Soil | MAEWLLIRLPRTPEEPATWVVADARGAVSGPPQSGPLTL |
Ga0210387_102437741 | 3300021405 | Soil | MADWLLLRLPRVPDQPATWLVVDPKGVATGPPQSG |
Ga0210384_103464921 | 3300021432 | Soil | MADWLLLRLPRAPEQAATWLVVDARGTPTGAPQSGPLSLAA |
Ga0210384_109656851 | 3300021432 | Soil | MADWLLLRLPRAPEEPASWLVADARGAPAGPPQSGPLSLAA |
Ga0210398_100613461 | 3300021477 | Soil | MAETLLLRLPHAADEAASWLIVDGRGAPVGPPQSGPLNLAAPRVAGRR |
Ga0210409_101429964 | 3300021559 | Soil | MAEWLLLRLPRAPEEPASWLVADARGAPVGPPQSGPLSLAAARAVG |
Ga0126371_115604511 | 3300021560 | Tropical Forest Soil | MAETLLLRMPRAPGQNAGWLIVDARGAPVGPPQAGP |
Ga0126371_131872921 | 3300021560 | Tropical Forest Soil | MADWLLLRLPRTDTELAVWLLVDARGAPASPPQSGPLSLAASRAPGRRVGL |
Ga0126371_135164541 | 3300021560 | Tropical Forest Soil | MSDWLLLRLPHAPDQPASWLVADARGAPMGPPQAGPLELAAPRVSGRRVC |
Ga0247778_11022441 | 3300022894 | Plant Litter | MADWLLIRLPRTAEQPATWLTIDPRGNPSGPPQSGPLSLAAPRAVGGAFV |
Ga0179589_105357162 | 3300024288 | Vadose Zone Soil | MADWLLIRLPRTPERPATWLTVDPRGNPSGPPQSGPLSLATP |
Ga0207874_10830392 | 3300025571 | Ionic Liquid And High Solid Enriched | MADWLLLRLPRAPEQPASWISVDARGAVQDGPHSGPLTLAATQAA |
Ga0207680_106801801 | 3300025903 | Switchgrass Rhizosphere | MADWLLIRLPRTPEHPATWLTVDPRGNPSGPPQSG |
Ga0207647_106807071 | 3300025904 | Corn Rhizosphere | MADWLLIRLPRTAEQPATWLTVDPRGNPSGPPQSGPLSLAAPRAAG |
Ga0207671_104922032 | 3300025914 | Corn Rhizosphere | MADWLLIRLPRTAEQPATWLTVDPRGNPSGPPQSGPLSLAAPR |
Ga0207693_112435301 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MADWLLLRLPRSADQPATWLIVDPRGNAVGPPQSGPLSLAAP |
Ga0207663_102286613 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MAESLLLRLPRDPEQAASWLIVDARGAPVGPPQSGPLNLA |
Ga0207663_109870481 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MADWLLLRLPREETELATWLVVDSRGTPSSPPQSGPLALAAA |
Ga0207665_100302296 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MADWLLLRLPRADAELATWLVVDARGAPISPPQSGPLGLA |
Ga0207674_116373212 | 3300026116 | Corn Rhizosphere | MADWLLLRLPRSPEQPASWLIVDPRGAASGPPQSGPLSLAAARAPGRRICVL |
Ga0209152_100098396 | 3300026325 | Soil | MADWLLLRLPRAAGEPASWLIADARGAPAGPAQSGPLTLAAARAPGRRV |
Ga0209116_10759782 | 3300027590 | Forest Soil | MADWLLLRLPHAAEQPATWLTADARGAPTGLAQSGPLSL |
Ga0209588_11862051 | 3300027671 | Vadose Zone Soil | MADWLLLRLPRAPEGPASWLVADARGAPVGPPQSGPLSLAAAR |
Ga0209526_104256032 | 3300028047 | Forest Soil | MADWLLLRLPRAPEEPASWLVADARGAPAGPPQSGPLSLAAARA |
Ga0268265_120688311 | 3300028380 | Switchgrass Rhizosphere | MADWLLIRLPRTAEQPATWLTVDPRGNPSGPPQSGPLSLAAPRA |
Ga0308309_111131622 | 3300028906 | Soil | MSDWLLLRLPRTPDQPASWLVTDARGTPSGPPQSGPLN |
Ga0222749_101749482 | 3300029636 | Soil | MAEWLLLRLPRAPEEPASWLVADARGAPVGPPQSGPLSLAA |
Ga0302311_109121342 | 3300030739 | Palsa | MSDWLLLRLPRTPDQPASWLVTDARGAPSGPPQSGPLSLAVPRA |
Ga0318541_106587722 | 3300031545 | Soil | MADWLLLRLPRADAELATWLVVDARGAPISPPQSGPLGLAAARAPGRRVCLLV |
Ga0318573_100544091 | 3300031564 | Soil | MADWLLLRLPRAGTELATWLVVDARGAPLSPPQSGPLALAAARVPGRRVC |
Ga0318555_104419881 | 3300031640 | Soil | MSDWLLLRLPRAPEQPATWLVVDPRGVALGPPQAGPLSLAAPRIAGRR |
Ga0318561_102086371 | 3300031679 | Soil | MSDWLLLRLPHAGAELATWLVVDARGAPMSPPQSGPLALAAPRVPGRRV |
Ga0318561_105940311 | 3300031679 | Soil | MSDWLLLRLPHTDTELATWLVVDARGAPLSPPQSGPLALAAPRV |
Ga0307476_101055161 | 3300031715 | Hardwood Forest Soil | MAETLLLRLPHAADEAASWLIVDGRGAPVGPPQSGPLNLAAPRVAG |
Ga0306917_105206331 | 3300031719 | Soil | MSDWLLLRLPHAGAELATWLVVDARGAPMSPPQSGPLALA |
Ga0307477_101358751 | 3300031753 | Hardwood Forest Soil | MADWLLLRLPRAPEQPATWLVADARGTATGPPQSGPLSLAAPRTAG |
Ga0307477_109629742 | 3300031753 | Hardwood Forest Soil | MADWLLIRLPRTPEQPATWLTVDPRGNPSGPPQSGPLSLAAPRSVGR |
Ga0318521_101599271 | 3300031770 | Soil | MSDWLLLRLPQAGAELATWLVVDARGAPLSPPQSGPLA |
Ga0318566_101330412 | 3300031779 | Soil | MSDWLLLRLPHAGVELASWLVVDARGAPLSPPQSGPLALAAPRT |
Ga0318508_10316161 | 3300031780 | Soil | MSDWLLLRLPRADTELATWLVVDARGAPLSPPQSGPLALA |
Ga0318547_100441944 | 3300031781 | Soil | MSDWLLLRLPREDAELATWLVIDARGAPLGPPQSGPLALAAARAPGRRVC |
Ga0318547_109272022 | 3300031781 | Soil | MSDWLLLRLPRAPEQPATWLVVDPRGVALGPPQAGPLSLAAPRIA |
Ga0318552_103803752 | 3300031782 | Soil | MSDWLLLRLPREDAELATWLVIDARGAPLGPPQSGPLALAAARTTGRRVCV |
Ga0318552_106295161 | 3300031782 | Soil | MADWLLLRLPRADAELATWLVVDARGAPISPPQSGPLGLAAARAPGRRVC |
Ga0318503_101779551 | 3300031794 | Soil | MSDWLLLRLPHTDTELATWLVVDARGAPLSPPQSGPLA |
Ga0318503_102039202 | 3300031794 | Soil | MADWLLLRLPRADAELATWLVVDARGAPISPPQSG |
Ga0318557_101903862 | 3300031795 | Soil | MSDWLLLRLPRADTELATWLVVDARGAPLSPPQSGPLALAAARVPGR |
Ga0318557_105763382 | 3300031795 | Soil | MSDWLLLRLPREDAELATWLVIDARGAPLGPPQSGPLALAAARTTGRRVC |
Ga0318568_100142471 | 3300031819 | Soil | MSDWLLLRLPREDAELATWLVIDARGAPLGPPQSGPLALAAARTTG |
Ga0318567_101103331 | 3300031821 | Soil | MSDWLLLRLPHTDTELATWLVVDARGAPLSPPQSGPLALAAPRAS |
Ga0307478_100672475 | 3300031823 | Hardwood Forest Soil | MADWLLLRLPRVPDEPATWLVVDARGTSVGPPQGGPLTLAAARTAGRRV |
Ga0318564_103384072 | 3300031831 | Soil | MPDWLLLRLPREDAELATWLVVDARGAPLSPPQSGPLALAAARIPG |
Ga0318495_100705531 | 3300031860 | Soil | MSDWLLLRLPREDAELATWLVIDARGAPLGPPQSG |
Ga0306919_107486531 | 3300031879 | Soil | MSDWLLLRLPRADTELATWLVVDARGAPLSPPQSGPLALAAARVP |
Ga0318536_101196901 | 3300031893 | Soil | MSDWLLLRLPHTDTELATWLVVDARGAPLSPPQSGPLALAAPRVPG |
Ga0318520_102754481 | 3300031897 | Soil | MSDWLLLRLPHAGAELATWLVVDARGAPLSPPQSGPLALAAPRAPGRRVAV |
Ga0306926_119028131 | 3300031954 | Soil | MADWLLLRLPRTDTELAVWLLVDARGAPASPPQSGP |
Ga0318530_100442513 | 3300031959 | Soil | MSDWLLLRLPHAGAELATWLVVDARGAPLSPPQSGPLA |
Ga0307479_120718492 | 3300031962 | Hardwood Forest Soil | MADWLLLRLPRSPEQLATWLVVDARGVAVGPPQSGPLSLAAARTAGRRVCV |
Ga0318562_100703583 | 3300032008 | Soil | MADWLLLRLPRAGTELATWLVVDARGAPLSPPQSGPLALAAARVPG |
Ga0318507_100943802 | 3300032025 | Soil | MADWLLLRLPRAGTELATWLVVDARGAPLSPPQSGPLALAAARVPGRR |
Ga0318507_101180051 | 3300032025 | Soil | MSDWLLLRLPHAGAELATWLVVDARGAPLSPPQSGPLALA |
Ga0318514_102829152 | 3300032066 | Soil | MSDWLLLRLPREDAELATWLVIDARGAPLGPPQSGPLALAAARAPGR |
Ga0318514_104719001 | 3300032066 | Soil | MSDWLLLRLPHAGAELATWLVVDARGAPLSPPQSGPLALAA |
Ga0318524_103494712 | 3300032067 | Soil | MSDWLLLRLPHAGAELATWLVVDARGAPLSPPQSGPLALAAP |
Ga0318525_103792131 | 3300032089 | Soil | MSDWLLLRLPQAGAELATWLVVDARGAPLSPPQSGPLALAA |
Ga0318577_102493022 | 3300032091 | Soil | MSDWLLLRLPHAGAELATWLVVDARGAPLSPPQSGPLALAAPRTPGRRVAVL |
Ga0307471_1013335001 | 3300032180 | Hardwood Forest Soil | MADWLLLRLARTQEEPATWLVVDARGVPLGPAQSGPLALAAPRT |
Ga0335079_110413652 | 3300032783 | Soil | MADWLLLRLPREETELATWLVVDSRGTPSSPPQSGPLA |
Ga0335070_102675383 | 3300032829 | Soil | MAESLLLRLPRTPEEQASWLIVDTRGTPVGPPQSGPLNLAAPRVTGRRVLVV |
Ga0335075_103682623 | 3300032896 | Soil | MADWLLLRLPRTPQQQATWLIVDGRGAAIGPPQGGPLSLAAPRA |
Ga0335072_115355921 | 3300032898 | Soil | MADWLLLRLPRTPDQPATWLVVDPRGAAAGPPQSGPLSLAAARSAGRRIC |
Ga0335077_102003234 | 3300033158 | Soil | MAETLLLRLPRDPGHAPSWLIVDARGAAVGPPQSGPLNLAAPRVAG |
Ga0310914_113330022 | 3300033289 | Soil | MPDWLLLRLPREDAELATWLVVDARGAPLRPPQSGPL |
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