Metagenome / Metatranscriptome Family F079527

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F079527
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	46 residues
Representative Sequence	MQTLALPPGPAEGFDLGGSDESLARLRRYFAEFGDTYRVFAP
Number of Associated Samples	93
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	14.78 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	83.48 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (98.261 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (17.391 % of family members)
Environment Ontology (ENVO)	Unclassified (25.217 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.565 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.00% β-sheet: 0.00% Coil/Unstructured: 80.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF04028	DUF374	68.70
PF08448	PAS_4	4.35
PF01402	RHH_1	1.74
PF08447	PAS_3	1.74
PF06181	Urate_ox_N	0.87
PF04773	FecR	0.87
PF01979	Amidohydro_1	0.87
PF01729	QRPTase_C	0.87
PF00067	p450	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2121	Uncharacterized conserved protein, lysophospholipid acyltransferase (LPLAT) superfamily	Function unknown [S]	68.70
COG0157	Nicotinate-nucleotide pyrophosphorylase	Coenzyme transport and metabolism [H]	0.87
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	0.87
COG2124	Cytochrome P450	Defense mechanisms [V]	0.87
COG3748	Uncharacterized membrane protein	Function unknown [S]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.26 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	93.04 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	71.30 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	5.22 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.74 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	5.22 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.74 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	5.22 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.74 %
Unclassified	root	N/A	1.74 %

Name	Rank	Taxonomy	Distribution
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	5.22 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.74 %
Unclassified	root	N/A	1.74 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100223964	All Organisms → cellular organisms → Bacteria	1772	Open in IMG/M
3300002914\|JGI25617J43924_10240848	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300004082\|Ga0062384_100748698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	678	Open in IMG/M
3300004092\|Ga0062389_100859429	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300004092\|Ga0062389_101207617	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300005436\|Ga0070713_101870237	All Organisms → cellular organisms → Bacteria → Proteobacteria	582	Open in IMG/M
3300005537\|Ga0070730_10966747	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300005538\|Ga0070731_11041125	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300005610\|Ga0070763_10319041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	858	Open in IMG/M
3300005610\|Ga0070763_10447279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	733	Open in IMG/M
3300006050\|Ga0075028_100982163	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300006052\|Ga0075029_100590643	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300006052\|Ga0075029_101108521	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300009143\|Ga0099792_11005558	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300009177\|Ga0105248_13052430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	533	Open in IMG/M
3300009521\|Ga0116222_1152277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	995	Open in IMG/M
3300009525\|Ga0116220_10262169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	756	Open in IMG/M
3300009662\|Ga0105856_1181375	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300009697\|Ga0116231_10458944	All Organisms → cellular organisms → Bacteria → Proteobacteria	699	Open in IMG/M
3300009698\|Ga0116216_10477773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	754	Open in IMG/M
3300009701\|Ga0116228_10917120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	585	Open in IMG/M
3300009709\|Ga0116227_10045564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4132	Open in IMG/M
3300009709\|Ga0116227_10109662	All Organisms → cellular organisms → Bacteria → Proteobacteria	2228	Open in IMG/M
3300009709\|Ga0116227_10119391	All Organisms → cellular organisms → Bacteria → Proteobacteria	2113	Open in IMG/M
3300009709\|Ga0116227_10325935	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300009709\|Ga0116227_11487122	Not Available	507	Open in IMG/M
3300009787\|Ga0116226_11148161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	739	Open in IMG/M
3300009787\|Ga0116226_11227782	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300010341\|Ga0074045_10053651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2907	Open in IMG/M
3300010877\|Ga0126356_10569114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	786	Open in IMG/M
3300010877\|Ga0126356_11203396	All Organisms → cellular organisms → Bacteria → Proteobacteria	636	Open in IMG/M
3300010880\|Ga0126350_10549646	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300012927\|Ga0137416_10237035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1484	Open in IMG/M
3300014168\|Ga0181534_10141247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1229	Open in IMG/M
3300014495\|Ga0182015_10603629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	696	Open in IMG/M
3300014499\|Ga0182012_10656150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	671	Open in IMG/M
3300014838\|Ga0182030_11662000	All Organisms → cellular organisms → Bacteria → Proteobacteria	520	Open in IMG/M
3300015193\|Ga0167668_1009360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2212	Open in IMG/M
3300017823\|Ga0187818_10058527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1658	Open in IMG/M
3300017948\|Ga0187847_10446223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	714	Open in IMG/M
3300018034\|Ga0187863_10235730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1017	Open in IMG/M
3300018034\|Ga0187863_10664047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	588	Open in IMG/M
3300018037\|Ga0187883_10168679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1125	Open in IMG/M
3300018042\|Ga0187871_10018564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4543	Open in IMG/M
3300018042\|Ga0187871_10810939	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300018043\|Ga0187887_10197498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1197	Open in IMG/M
3300018044\|Ga0187890_10662605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	589	Open in IMG/M
3300019789\|Ga0137408_1427727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1577	Open in IMG/M
3300020004\|Ga0193755_1006581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3765	Open in IMG/M
3300020021\|Ga0193726_1034016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2508	Open in IMG/M
3300020199\|Ga0179592_10259231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	779	Open in IMG/M
3300020579\|Ga0210407_10364400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1131	Open in IMG/M
3300020580\|Ga0210403_10019888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5364	Open in IMG/M
3300020580\|Ga0210403_11293066	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300021170\|Ga0210400_10987825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	685	Open in IMG/M
3300021171\|Ga0210405_10579947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	875	Open in IMG/M
3300021171\|Ga0210405_11009497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	627	Open in IMG/M
3300021178\|Ga0210408_10611822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	862	Open in IMG/M
3300021180\|Ga0210396_10697300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	877	Open in IMG/M
3300021405\|Ga0210387_10729745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	877	Open in IMG/M
3300021406\|Ga0210386_10081987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2615	Open in IMG/M
3300021406\|Ga0210386_10521072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1027	Open in IMG/M
3300021411\|Ga0193709_1072336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	777	Open in IMG/M
3300021474\|Ga0210390_10645710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	885	Open in IMG/M
3300021475\|Ga0210392_11037421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	614	Open in IMG/M
3300021477\|Ga0210398_10637933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	864	Open in IMG/M
3300021478\|Ga0210402_11968941	All Organisms → cellular organisms → Bacteria → Proteobacteria	510	Open in IMG/M
3300024232\|Ga0247664_1007602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2481	Open in IMG/M
3300024271\|Ga0224564_1066436	All Organisms → cellular organisms → Bacteria → Proteobacteria	715	Open in IMG/M
3300026551\|Ga0209648_10042962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3903	Open in IMG/M
3300026557\|Ga0179587_10239827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1158	Open in IMG/M
3300026557\|Ga0179587_10260737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1111	Open in IMG/M
3300027590\|Ga0209116_1033549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1087	Open in IMG/M
3300027860\|Ga0209611_10574206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	625	Open in IMG/M
3300027905\|Ga0209415_10253558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1579	Open in IMG/M
3300027908\|Ga0209006_10695609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	833	Open in IMG/M
3300028574\|Ga0302153_10328882	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300028780\|Ga0302225_10029942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2736	Open in IMG/M
3300028808\|Ga0302228_10515462	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300028866\|Ga0302278_10341685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	681	Open in IMG/M
3300028877\|Ga0302235_10143024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1070	Open in IMG/M
3300029910\|Ga0311369_10731659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	808	Open in IMG/M
3300029910\|Ga0311369_10923470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	695	Open in IMG/M
3300029911\|Ga0311361_10529795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1158	Open in IMG/M
3300029939\|Ga0311328_10134042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2006	Open in IMG/M
3300029944\|Ga0311352_10427197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1081	Open in IMG/M
3300029945\|Ga0311330_10884592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	669	Open in IMG/M
3300029954\|Ga0311331_11365176	All Organisms → cellular organisms → Bacteria → Proteobacteria	586	Open in IMG/M
3300030007\|Ga0311338_12016530	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300030503\|Ga0311370_10139694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3356	Open in IMG/M
3300030520\|Ga0311372_12046296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	668	Open in IMG/M
3300030617\|Ga0311356_10288888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1647	Open in IMG/M
3300030677\|Ga0302317_10141620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1128	Open in IMG/M
3300030739\|Ga0302311_10234237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1369	Open in IMG/M
3300030940\|Ga0265740_1006481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	975	Open in IMG/M
3300031027\|Ga0302308_10044235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3253	Open in IMG/M
3300031027\|Ga0302308_10325290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	942	Open in IMG/M
3300031028\|Ga0302180_10048751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2568	Open in IMG/M
3300031057\|Ga0170834_111930985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	593	Open in IMG/M
3300031234\|Ga0302325_10267106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2824	Open in IMG/M
3300031234\|Ga0302325_10388819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2183	Open in IMG/M
3300031234\|Ga0302325_12831750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	567	Open in IMG/M
3300031236\|Ga0302324_100462446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1867	Open in IMG/M
3300031524\|Ga0302320_12109272	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300031708\|Ga0310686_106563414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	830	Open in IMG/M
3300031708\|Ga0310686_110584318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	553	Open in IMG/M
3300031708\|Ga0310686_117594156	All Organisms → cellular organisms → Bacteria → Proteobacteria	733	Open in IMG/M
3300031823\|Ga0307478_10687717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	857	Open in IMG/M
3300031837\|Ga0302315_10331789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	864	Open in IMG/M
3300031962\|Ga0307479_11871456	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300031962\|Ga0307479_12023469	Not Available	525	Open in IMG/M
3300032001\|Ga0306922_11664895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	633	Open in IMG/M
3300034125\|Ga0370484_0092273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	785	Open in IMG/M
3300034130\|Ga0370494_141136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	616	Open in IMG/M
3300034163\|Ga0370515_0445583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	546	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.43%
Host-Associated	Host-Associated	9.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.52%
Aquatic	Environmental → Aquatic	13.91%
Plants	Host-Associated → Plants	9.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.04%
Peat	Environmental → Terrestrial → Peat	23.48%
Freshwater	Environmental → Aquatic → Freshwater	11.30%
Peat Moss	Host-Associated → Plants → Peat Moss	8.70%
Sediment	Environmental → Aquatic → Sediment	2.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	23.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.30%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	8.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.96%
Loam	Environmental → Terrestrial → Soil → Loam	5.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	23.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.43%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	8.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.35%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.48%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	17.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.91%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	8.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	6.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.22%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.61%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.61%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.61%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.61%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.74%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.74%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.87%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.87%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.87%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009662	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060	Environmental	Open in IMG/M
3300009697	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028574	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034130	Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1002239641	3300002245	Forest Soil	MQTTAIPPGPTEGFDLGGSEESLTRLQDYFARFGDVYRVFAPARGVYNYVINH
JGI25617J43924_102408481	3300002914	Grasslands Soil	MQTLALPPGPVEGFDLGGNDESLARFRRYFAEFGDIYRVFAPG
Ga0062384_1007486981	3300004082	Bog Forest Soil	MQTIALPPGPAEGFDLAGSDETLARLRRYFAEFGDIYRVFAPGR
Ga0062389_1008594291	3300004092	Bog Forest Soil	MQTTAIPPGPTEGFDLGGSEESLTRLQHYFARFGDVYRIFAPARGVYNYVINHPEDIKRVLL
Ga0062389_1012076172	3300004092	Bog Forest Soil	MQTTAIPPGPAEGFDLGGSDESLARLQQYFARFGDVYRVFAPGRGVYNYVIN
Ga0070713_1018702372	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQTKAFPPGPSEGFDVGGSDESLERLKRYYAEFGDIYRLFAPSRGVYNYIIN
Ga0070730_109667471	3300005537	Surface Soil	MQTTAIPPGPAEAFDLNGSEETLARLTEYFVRFGDVYRVFSPTRGVYNYVIN
Ga0070731_110411252	3300005538	Surface Soil	MPSASLPPGPAEGFDLGGSDETLPRLCEYFARYGNVYRVFAP
Ga0070763_103190411	3300005610	Soil	MARAACTPVQLRYNAPMQTTALPPGPAEGFDLGGSEASLARLCEYFPRFGDVYRVFAPNRGVFNY
Ga0070763_104472791	3300005610	Soil	MQTIAIPPGPAEGFDIGGSEESLARLQDYFGRFGD
Ga0075028_1009821632	3300006050	Watersheds	MQSTAPPPGPAEGFDLGGSEESLALMRECFARYGDIYRIFAPGRGVYN
Ga0075029_1005906432	3300006052	Watersheds	MRMQSAGIPPGPEAGFDLGATDETLALMRECFPRYGDIYRVFSKIRGVYDYVINNPEDIKRVM
Ga0075029_1011085211	3300006052	Watersheds	MQTTAIPPGPAESFDLGGSDESLARLREYFARYGDVYRVFAPS
Ga0099792_110055581	3300009143	Vadose Zone Soil	MQTTAIPPGPAEGFDLGGSEESLALMRRCFAQYGD
Ga0105248_130524302	3300009177	Switchgrass Rhizosphere	MAMQTLSLPPGPTEGFDLGGSDESLARLRRYFKEYGDLY
Ga0116222_11522772	3300009521	Peatlands Soil	MQTAALPPGPAEGFDLGGSEESLARLREYFSRFGDVYR
Ga0116220_102621692	3300009525	Peatlands Soil	MQTTAIPPGPAESFDLGGSDESLARLREYFARYGDVYRVFAP
Ga0105856_11813751	3300009662	Permafrost Soil	GAQCLSYNAGMQTMAIPPGPTEGFDLGGSEESLSRLQDYFVRFGDVYRIFAPARGVYN*
Ga0116231_104589441	3300009697	Host-Associated	MQTTIPCPGPTEGFNLGGSDESLAKMQDWFALYGDVYRV
Ga0116216_104777732	3300009698	Peatlands Soil	MHTTALPPGPAEGFDLGGSDESLARLREYFARFGDVYRVF
Ga0116228_109171201	3300009701	Host-Associated	MQNTAIPPGPSEGFDIGGSEDSLVRLRDYFARYGDIYRVFAPARGVYSYIINHPEDIK
Ga0116227_100455641	3300009709	Host-Associated	MQTTAIPPGPAEAFDLNGSEETLARLTEYFARFGDLYRVFSPTRG
Ga0116227_101096623	3300009709	Host-Associated	MQTTAIPPGPTEGFDLGASEDSLARMRDYFAEFGDIYRVFAPSRGVFNYV
Ga0116227_101193913	3300009709	Host-Associated	MQTLAVPGPAEGFDLGGTDESLARLRDYFGRFGDVYRVFAPGRGVYN
Ga0116227_103259351	3300009709	Host-Associated	MQSARLPPGPAEGFDLGGSDETLPRLCEYFARYGDVYRVF
Ga0116227_114871221	3300009709	Host-Associated	MQTLALPPGPTEGFDLGGSEESLALMRECFTRYGDIYRVFAPSRGVYNYVIN
Ga0116226_111481612	3300009787	Host-Associated	MQTTTIPPGPSEGFDLGGSDESLARMRTYFAEYGDIYRVFAP
Ga0116226_112277821	3300009787	Host-Associated	MPTTATPPGPAAGFDLGGSDESLELLRHCFARFGDTYRV
Ga0074045_100536513	3300010341	Bog Forest Soil	MPAMQSTALPPGPAEGFDLGGSDESLTRLREYFARFGDVYRVFA
Ga0126356_105691142	3300010877	Boreal Forest Soil	MQIQPAPGPTEGFDLGGSDESLVRLRRYFAEFGDIYRVF
Ga0126356_112033962	3300010877	Boreal Forest Soil	MQTTAIPPGPAEGFDLGGTEESLALMRRCFAQYGDVYRIFAPSRGV
Ga0126350_105496462	3300010880	Boreal Forest Soil	MQTMALPPGPAEGFDLGGSEESLALMRECFARFGDVYRIFAPSRGVYNYV
Ga0137416_102370353	3300012927	Vadose Zone Soil	MQTTAIPPGPAAGFDLGGSEESLALMRRCFAQYGDVYRIF
Ga0181534_101412471	3300014168	Bog	MQTVALPPGPAEGFDLGGSEDSLSMMRDCFAQYGNIYR
Ga0182015_106036292	3300014495	Palsa	MPGMQTTAIPPGPSEGFDIGGSEESLERLRDYFARFGDVYRVFAPARGVYSYIINNPE
Ga0182012_106561502	3300014499	Bog	MQSTALPPGPTEGFDLGGSEDSLSMMRACFARYGDVYRIFAP
Ga0182030_116620002	3300014838	Bog	MQTTALPPCPTEGFDLGGSDESLARLRRYFTQFGDIYRVFAPGR
Ga0167668_10093603	3300015193	Glacier Forefield Soil	MQTTAIPPGPAEGFDLGGSEESLALMRRCFAQYGDVYRIFAPSRGVYN
Ga0187818_100585273	3300017823	Freshwater Sediment	MQTTALPPGPAEGFDLGGSEESLARLCEYFACFGDVYRVFAPSRGVYNYVINH
Ga0187847_104462232	3300017948	Peatland	MQTTAIPPGPAEAFDLNGSEETLARLTEYFARFGDLYRVFSPTRGVYNYVI
Ga0187863_102357302	3300018034	Peatland	MNTIAVPPGPAEGYDLGGSEESLARMRDYFERYGDT
Ga0187863_106640472	3300018034	Peatland	MQTLGPPPGPADGFDLGGNDESLARLGRYFAEFGDIYRVFAPAR
Ga0187883_101686792	3300018037	Peatland	MPGMQTTAVPPGPTAGFDLGGSDESLARMSEYFRQYGDVYRVFAP
Ga0187871_100185641	3300018042	Peatland	MHTTATPPGPPEGYDLGGSDETLSKLREYFARFGDVYRVFAPARGVYDYVINH
Ga0187871_108109392	3300018042	Peatland	MTKMQTTALPPGPAEGFDLGGSDESLTRLREYFARFGDVYRVFAPARGVYNYVIN
Ga0187887_101974981	3300018043	Peatland	MALPPGPTEGFDLGGSEASLQLMRECFTRFGDIYRVFAPSRGVYNYVIN
Ga0187890_106626051	3300018044	Peatland	MQTMTLPPGPAEGFDLGGDEASLAMLRQCFERFGDVY
Ga0137408_14277273	3300019789	Vadose Zone Soil	MQTLALPPGPAEGFDLGGNDESLARFRRYFAEFGDIYRVFAP
Ga0193755_10065811	3300020004	Soil	MQTTAIPPGPTEGYDLGGSDESLTRLRDYFARFGDVYRIF
Ga0193726_10340161	3300020021	Soil	MQTTAIPPGPSEGFDIGGSEESLARLQDYFTRFGDVYRVFAPSRGLYNYVINHP
Ga0179592_102592312	3300020199	Vadose Zone Soil	MQTMALPPGPTEGFDLGGSEESLALMRACFARFGDVYRIFA
Ga0210407_103644001	3300020579	Soil	MQTTAIPPGPAEGFDLGGSEESLALMRRCFAQYGDVYRIFAPSRGVYNYV
Ga0210403_100198881	3300020580	Soil	MQTTAIPPGPSEGFDLGGSDESLTRLQDYFARFGDVYRIFAPARGVYNYVINRPE
Ga0210403_112930661	3300020580	Soil	MQTLTLPPGPADGFDLGGSDESLARLIRYFAQFGDIYR
Ga0210400_109878252	3300021170	Soil	MQTTAIPPGPSEGFDLGGSDESLTRLQDYFARFGDVYRIFAPARGVYNYVINHPE
Ga0210405_105799471	3300021171	Soil	MMQTLALPPGPAEGFNLGGNDETLLRLSRYFAEFGDI
Ga0210405_110094972	3300021171	Soil	MHTIAIPPGPTEGFDLGGSDESLARLQDYFARFGDVYRVFAP
Ga0210408_106118222	3300021178	Soil	MQTLTLPPGPAEGFDLGGNDESLARLNRYFAEFGDVYRVFAPG
Ga0210396_106973002	3300021180	Soil	MQTLALPPGPAEGFDLGGNDESLARFRRYFKEFGDIYRVFAPGRGVY
Ga0210387_107297451	3300021405	Soil	MQTTAIPPGPTEGFDLGGSDESLTRLQDYFARFGDVYR
Ga0210386_100819871	3300021406	Soil	MQTTAIAPGPAEGFDIGGSEESLARLQDYFGRFGDIYRVFATSRG
Ga0210386_105210721	3300021406	Soil	MQSAPLPPGPAEGFDLGGSDETLPRLREYFARYGNVYRVFAPSRGVYDY
Ga0193709_10723361	3300021411	Soil	MQTTVIPPGPAEGFDLGGSEESLALMRRCFAQYGDVYRIFAPSRGVYNYVIN
Ga0210390_106457102	3300021474	Soil	MQTTAIPPGPTEGFDLGGSDESLARLQDYFARFGDVYRV
Ga0210392_110374212	3300021475	Soil	MQTLAIPPGPPEGFDIGGSDESLTRLQDYFGRFGDIYRVFAPSRG
Ga0210398_106379331	3300021477	Soil	MQTIAIPPGPAEGFDIGGSEESLARLQDYFGRFGDIYRVFAPG
Ga0210402_119689411	3300021478	Soil	MQTTAIPPGPAEGFDLGGSEESLALMRRCFAQYGDVYRIFAP
Ga0247664_10076023	3300024232	Soil	MQTLALPPGPTEGFDLGGSDESLARLRRYFKEYGDLYRVFAPGRGVYN
Ga0224564_10664362	3300024271	Soil	MQSAPLPPGPAEGFDLGGSDETLPRLREYFARYGNVYRVFAPSR
Ga0209648_100429623	3300026551	Grasslands Soil	MQTLALPPGPVEGFDLGGNDESLARFRRYFAEFGDIYRVFAPGRGVYNYVINHP
Ga0179587_102398271	3300026557	Vadose Zone Soil	MQTLVLPPGPAEGFDLGGSDESLARLRRYFTEFGDI
Ga0179587_102607372	3300026557	Vadose Zone Soil	MQTMALPPGPTEGFDLGGSEESLALMRACFARFGDVYRIFAPSRGVFNYVINHP
Ga0209116_10335492	3300027590	Forest Soil	MQALTLPPGPTEGFDLGGSDETLVRLRRYFAEFGDIYRVFA
Ga0209611_105742062	3300027860	Host-Associated	MQTKAVPGPAEGFDLGGTDESLARLRDYFGRFGDVYRVFAPSRGVYNYVIN
Ga0209415_102535581	3300027905	Peatlands Soil	MRAMQTTALPPGPAEGFDLGGSDESLTRLRDYFARFGDVYRVFAPAR
Ga0209006_106956091	3300027908	Forest Soil	MQTLALPPGPAEGFDLGGSDESLARLRRYFAEFGDTYRVFAP
Ga0302153_103288821	3300028574	Bog	MQTTAIPPGPTEGYDLGGSDESLERMREYFARYGDTYRVFAPA
Ga0302225_100299421	3300028780	Palsa	MQTIAIPPGPAEGFDIGGSEESLARLQDYFGRFGDIYRVFAPSRGVFNYVI
Ga0302228_105154621	3300028808	Palsa	MQSGPLPPGPAEGFDLGGSDETLPRLREYFARYGNVYRVFAPSRGV
Ga0302278_103416851	3300028866	Bog	VRYNRRMQQSLVPPGPDEGFDLGGSDETLARMREYGARYGDTYRVFAPAR
Ga0302235_101430241	3300028877	Palsa	MAMQSGPLPPGPAEGFDLGGSDETLPRLREYFARYGNVYRVFAPSRGV
Ga0311369_107316592	3300029910	Palsa	MHSGPLPPGPAEGFDLGGSDETLPRLREYFARYGNVYRVFAPSRGVYDYVIN
Ga0311369_109234701	3300029910	Palsa	MQTTAIPPGPTEGFDIGGSEESLGRLRDYFARFGDVYRVFAPARGV
Ga0311361_105297952	3300029911	Bog	MQTPALPPGPAEGFDLGGSDESLARLRRYFAEFGDTYRVFAPSRGVYNYVINH
Ga0311328_101340423	3300029939	Bog	VRYNRRMQQSLVPPGPDEGFDLGGSDETLARMREYGARYGDTYRVFAPA
Ga0311352_104271971	3300029944	Palsa	MRMQSVRLPPGPAEGFDLGGSDQTLPRLCEYFARYGNVYRVFAPSRG
Ga0311330_108845921	3300029945	Bog	MAIPPGPTEGFDLNGNEESLSRLCGYFTRFGDVYRV
Ga0311331_113651762	3300029954	Bog	MQTVALPPGPAEGFDLGGSEDSLSMMRDCFAQYGDIYRIF
Ga0311338_120165302	3300030007	Palsa	MQTTAIPPGPAEAFDLNGSEETLARLTEYFARFGDLYRVFSPTRGVYNY
Ga0311370_101396941	3300030503	Palsa	MQSAHLPPGPAEGFDLGGSDETLPRLCEYFARYGNVYRVFA
Ga0311372_120462961	3300030520	Palsa	MQTTAIPPGPAEAFDLNGSEETLARLTEYFARFGDLYRVFSP
Ga0311356_102888883	3300030617	Palsa	MHSGPLPPGPAEGFDLGGSDETLPRLREYFARYGNVYRVFAPSRG
Ga0302317_101416204	3300030677	Palsa	MQTLALPPGPAEGFDLGGSEESLALMRDCFARYGDVYRIFAPSRGV
Ga0302311_102342371	3300030739	Palsa	MQSASLPPGPAEGFDLGGSEQTLPRLCEYFARYGNVYR
Ga0265740_10064812	3300030940	Soil	MQTLAIPPGPAEGFDIGGSEESLARLQDYFGRFGDIYRVFAPSRGVFNYVINH
Ga0302308_100442353	3300031027	Palsa	MQSASLPPGPAEGFDLGGSDETLPRLCEYFARYGNV
Ga0302308_103252902	3300031027	Palsa	MQSAHLPPGPAEGFDLGGSDETLPRLCEYFARYGNVYRV
Ga0302180_100487511	3300031028	Palsa	MQTIAIPPGPAEGFDIGGSEESLARLQDYFGRFGDIY
Ga0170834_1119309852	3300031057	Forest Soil	MQTTAIPPGPAEGFDIGGSEESLARLQDYFGRFGDIYRVFAPGRGVFN
Ga0302325_102671063	3300031234	Palsa	MHSGPLPPGPAEGFDLGGSDETLPRLREYFARYGNV
Ga0302325_103888193	3300031234	Palsa	MRMQSVRLPPGPAEGFDLGGSDQTLPRLCEYFARYGNVYRVFAPSRGVYDYVI
Ga0302325_128317501	3300031234	Palsa	MQTKGPPPGPADGFDLGGNDESLARLGRYFAEFGDIFRVFAPARGVFNYVI
Ga0302324_1004624461	3300031236	Palsa	MQSASLPPGPAEGFDLGGSEQTLPRLCEYFARYGNVYRVFAPCR
Ga0302320_121092721	3300031524	Bog	MQTTAIPPGPTEGFDIGGSDESLARLRDYYARFGDVYRVFAPARGVYN
Ga0310686_1065634142	3300031708	Soil	MQTAAIPPGPTEGFDLGGSDESLARLQDCFARFGDVYRVFAPG
Ga0310686_1105843181	3300031708	Soil	MGLRYNERMQTIALPPGPAEGFDLGGSEESLSRLSRYFAQF
Ga0310686_1175941561	3300031708	Soil	MQTPALPPGPAEGFDLGGSDESLARLRRYFAEYGDLYRI
Ga0307478_106877172	3300031823	Hardwood Forest Soil	MQTTAIPPGPTEGFDLGGSDESLTRLQDYFARFGDVYRIFAPARGVFNYVINHP
Ga0302315_103317893	3300031837	Palsa	MQTLALPPGPTEGFDLGGSEESLALMRECFSRYGDIYRIFAPSRGVYNYVINHPRDIKTV
Ga0307479_118714562	3300031962	Hardwood Forest Soil	MQTLALPPGPAEGFDLGGNDETLARLNRYFAEFGDTYRVFAPG
Ga0307479_120234692	3300031962	Hardwood Forest Soil	MMQTLTLPPGPAEGFDLGGNDESLARLNRYFAKFGDVYRVFAPGRGVYNYVINH
Ga0306922_116648951	3300032001	Soil	MHTPTLPPGPTEGFDLGGSDETLARLRRYFAEYGDLYRVFAPARG
Ga0370484_0092273_602_784	3300034125	Untreated Peat Soil	MQTVALPPGPTEGFNLGGSEDSLALMRDCFARFGNVYRIFAPSRGVYHYVINHPSDIKRV
Ga0370494_141136_467_616	3300034130	Untreated Peat Soil	MQTTAPPPGPATGFDLGGSEESLSLMRDCFARFGDVYRIFAPSRGVYNYV
Ga0370515_0445583_436_546	3300034163	Untreated Peat Soil	MQALTLPPGPTEGFDLGGSDESLARLRRYFAEFGDIY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079527

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences