Metagenome Family F079464

Basic Information
Family ID	F079464
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	46 residues
Representative Sequence	LAGYLPKEWNGQRVAVRFARGRGFDARLVDNNAGGITVEAIK
Number of Associated Samples	37
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.52 %
% of genes near scaffold ends (potentially truncated)	99.13 %
% of genes from short scaffolds (< 2000 bps)	84.35 %
Associated GOLD sequencing projects	37
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (95.652 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (68.696 % of family members)
Environment Ontology (ENVO)	Unclassified (68.696 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (80.870 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1ICChiseqgaiiDRAFT_20121611 2Ga0126307_100169941 3Ga0126307_101421247 4Ga0126307_103317664 5Ga0126307_107698791 6Ga0126307_108930852 7Ga0126307_110745533 8Ga0126307_111671871 9Ga0126307_113792551 10Ga0126313_1000582316 11Ga0126313_100161175 12Ga0126313_100967231 13Ga0126313_101823034 14Ga0126313_102260193 15Ga0126313_103163173 16Ga0126313_107363383 17Ga0126313_112419813 18Ga0126313_115394261 19Ga0126313_115978331 20Ga0126313_117752571 21Ga0126305_100591164 22Ga0126305_101294227 23Ga0126305_102604713 24Ga0126305_103188981 25Ga0126305_103206133 26Ga0126305_103815823 27Ga0126305_105063611 28Ga0126305_107884292 29Ga0126304_101453114 30Ga0126304_104340621 31Ga0126304_106101791 32Ga0126304_106597091 33Ga0126304_112585092 34Ga0126315_102122164 35Ga0126315_109512762 36Ga0126309_100254456 37Ga0126309_100350217 38Ga0126309_100569411 39Ga0126309_100686731 40Ga0126309_102137472 41Ga0126309_105702272 42Ga0126309_112075131 43Ga0126308_100130181 44Ga0126308_102836113 45Ga0126308_111104961 46Ga0126308_111285552 47Ga0126312_100084431 48Ga0126312_1002282711 49Ga0126312_101097865 50Ga0126312_101190831 51Ga0126312_102113762 52Ga0126312_102807561 53Ga0126312_107042962 54Ga0126314_100647185 55Ga0126314_102148141 56Ga0126314_108445451 57Ga0126314_111014641 58Ga0126314_112332542 59Ga0126314_114926921 60Ga0126310_100275459 61Ga0126310_100319734 62Ga0126310_102044331 63Ga0126310_106007881 64Ga0126310_106879321 65Ga0126310_107196641 66Ga0126310_112565022 67Ga0126310_113194911 68Ga0126310_113632011 69Ga0126311_100237891 70Ga0126311_108657011 71Ga0126311_112157792 72Ga0126311_112626822 73Ga0126311_116692901 74Ga0126311_117829422 75Ga0126311_119248361 76Ga0126306_102367441 77Ga0126306_106812871 78Ga0126306_110188072 79Ga0126306_111035441 80Ga0126306_115219161 81Ga0136631_103036452 82Ga0136621_10611203 83Ga0136632_100303041 84Ga0136632_102089811 85Ga0136615_100667024 86Ga0136613_104726791 87Ga0136614_105969192 88Ga0183260_107905621 89Ga0183260_108835921 90Ga0190275_1001848210 91Ga0190275_102428465 92Ga0190275_109861721 93Ga0190275_121782391 94Ga0190269_100694285 95Ga0190268_102308483 96Ga0190268_110195591 97Ga0190268_119574402 98Ga0190270_109310594 99Ga0190271_101455341 100Ga0190271_123814791 101Ga0196959_101616611 102Ga0307276_100158804 103Ga0307285_101955352 104Ga0307297_100026056 105Ga0307408_1019393361 106Ga0307413_108520541 107Ga0307406_117579441 108Ga0307409_1003879021 109Ga0307409_1010365941 110Ga0307409_1017117661 111Ga0307416_1021447012 112Ga0307414_106306941 113Ga0307415_1013473161 114Ga0307415_1018774732 115Ga0334916_023857_579_749
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1ICChiseqgaiiDRAFT_20121611 2Ga0126307_100169941 3Ga0126307_108930852 4Ga0126307_113792551 5Ga0126313_107363383 6Ga0126304_104340621 7Ga0126308_100130181 8Ga0126310_113632011 9Ga0126306_102367441
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1ICChiseqgaiiDRAFT_20121611 2Ga0126307_100169941 3Ga0126307_108930852 4Ga0126307_113792551 5Ga0126313_107363383 6Ga0126304_104340621 7Ga0126308_100130181 8Ga0126310_113632011 9Ga0126306_102367441
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 38.10% Coil/Unstructured: 61.90%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF08706	D5_N	0.87
PF08708	PriCT_1	0.87
PF01381	HTH_3	0.87
PF09329	zf-primase	0.87
PF04434	SWIM	0.87
PF14216	DUF4326	0.87
PF09250	Prim-Pol	0.87
PF11300	DUF3102	0.87
PF03237	Terminase_6N	0.87
PF14163	SieB	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.87
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.87
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	0.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.39 %
Unclassified	root	N/A	2.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.65 %
Unclassified	root	N/A	2.61 %
Viruses	superkingdom	All Organisms → Viruses	1.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Unclassified	root	N/A	2.61 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	93.04 %
Unclassified	root	N/A	2.61 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	93.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Unclassified	root	N/A	2.61 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	80.87 %
Unclassified	root	N/A	2.61 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	80.87 %
Unclassified	root	N/A	2.61 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.22 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	80.87 %
Unclassified	root	N/A	2.61 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.22 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	0.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Unclassified	root	N/A	2.61 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	71.30 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	71.30 %
Unclassified	root	N/A	2.61 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	0.87 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2012161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	589	Open in IMG/M
3300009789\|Ga0126307_10016994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5415	Open in IMG/M
3300009789\|Ga0126307_10142124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1919	Open in IMG/M
3300009789\|Ga0126307_10331766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1224	Open in IMG/M
3300009789\|Ga0126307_10769879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	777	Open in IMG/M
3300009789\|Ga0126307_10893085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	718	Open in IMG/M
3300009789\|Ga0126307_11074553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	651	Open in IMG/M
3300009789\|Ga0126307_11167187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	623	Open in IMG/M
3300009789\|Ga0126307_11379255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	571	Open in IMG/M
3300009840\|Ga0126313_10005823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	7398	Open in IMG/M

Showing 1 to 10 of 115 entries

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Habitat	Taxonomy	Distribution
Environmental	Environmental	91.30%
Host-Associated	Host-Associated	8.70%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	7.83%
Plants	Host-Associated → Plants	8.70%
Terrestrial	Environmental → Terrestrial	83.48%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	7.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.70%
Soil	Environmental → Terrestrial → Soil	83.48%

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	7.83%
Sand	Environmental → Terrestrial → Soil → Sand	0.87%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.70%

Habitat	Taxonomy	Distribution
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	80.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.70%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	7.83%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	0.87%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	7.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	8.70%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	68.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.87%

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_20121611	3300000033	Soil	MAGYLPKEWXGKRVAVRFARGRGFDARLVGDNAGGITVEPIKEEDAEDEEER
Ga0126307_100169941	3300009789	Serpentine Soil	VLAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGITVEP
Ga0126307_101421247	3300009789	Serpentine Soil	LAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPINED
Ga0126307_103317664	3300009789	Serpentine Soil	LAGYLPKEWNGKRVAVRFARGRGFDARLVSDNAGGLTVEPINEDAE
Ga0126307_107698791	3300009789	Serpentine Soil	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGITVEP
Ga0126307_108930852	3300009789	Serpentine Soil	LAGYLSKEWNGQRVAVRFARGRGFDARLVDNNAGGITVEAIKEEGAEEDHARRAFVP
Ga0126307_110745533	3300009789	Serpentine Soil	MAGYLSKEWNGQRIAVRFARGRGFDARLVDNNAGGITVEAIKEEGTE
Ga0126307_111671871	3300009789	Serpentine Soil	LAGYLPKEWNGQRVAVRFTRGRGFDARLVENNAGGITVEAIQEEGAEEDHA
Ga0126307_113792551	3300009789	Serpentine Soil	MGGALAEYLPKEWNGKRVAVRFARGRGFDARLVGDNAG
Ga0126313_1000582316	3300009840	Serpentine Soil	MAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGLTVEPI
Ga0126313_100161175	3300009840	Serpentine Soil	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGLTVEPI
Ga0126313_100967231	3300009840	Serpentine Soil	LAGYLSKEWNGQRVAVRFARGRGFDARLVDNNAGGITVEAIKEEGAE
Ga0126313_101823034	3300009840	Serpentine Soil	MGGALAGYLPKEWNGQRVAVRFGSGRGFDARLVDNNAGGITVEAI
Ga0126313_102260193	3300009840	Serpentine Soil	LAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPVK
Ga0126313_103163173	3300009840	Serpentine Soil	MLAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPV
Ga0126313_107363383	3300009840	Serpentine Soil	LAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEE
Ga0126313_112419813	3300009840	Serpentine Soil	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEGTEED
Ga0126313_115394261	3300009840	Serpentine Soil	LAGYLPKEWNGKRVAVRFSRGRGFDARLVGDNAGGITVEPVKE
Ga0126313_115978331	3300009840	Serpentine Soil	MAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPIEEDTEEEHARSAFVP
Ga0126313_117752571	3300009840	Serpentine Soil	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGI
Ga0126305_100591164	3300010036	Serpentine Soil	VAGYLPKEWNGKRVAVRFARGRGFDARLVSDNAGGLTVEPI
Ga0126305_101294227	3300010036	Serpentine Soil	MAGYLSKEWNGQRIAVRFARGRGFDARLVDNNAGGITVEAIKEEGTEEDHALRAFV
Ga0126305_102604713	3300010036	Serpentine Soil	LAGYLPKEWNGQRVAVRFARGRGFDARLVGDNAGGLTVEPVKEEDA
Ga0126305_103188981	3300010036	Serpentine Soil	LAGYLSKEWNGQRIAVRFESGRGFDAMLVDNNAGGITVEAI
Ga0126305_103206133	3300010036	Serpentine Soil	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKE
Ga0126305_103815823	3300010036	Serpentine Soil	LAGYLPKEWNGKRVAVRFARGRGFDARLVSDNAGGLTVEPI
Ga0126305_105063611	3300010036	Serpentine Soil	LAGYLPKEWNGQRVAVRFARGRGFDARLVENNAGGITVEAIKEEG
Ga0126305_107884292	3300010036	Serpentine Soil	LSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKE
Ga0126304_101453114	3300010037	Serpentine Soil	LAGYLSKEWNGQRVAVRFGSGRGFDARLVDNNAGGITV
Ga0126304_104340621	3300010037	Serpentine Soil	VAGYLPKAWSGKRIGGRFARGRGFDARLVGDNAGGI
Ga0126304_106101791	3300010037	Serpentine Soil	LAGYLPKEWNGKRIVVRFARGRGFDARLVSDNAGGIFVEPIKE
Ga0126304_106597091	3300010037	Serpentine Soil	LAGYLPKEWNGQRVAVRFARGRGFDARLVENNAGGITV
Ga0126304_112585092	3300010037	Serpentine Soil	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEE
Ga0126315_102122164	3300010038	Serpentine Soil	LAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEG
Ga0126315_109512762	3300010038	Serpentine Soil	VAGYLPKEWSGKRIAVRFGTGRGFDARLVGDNAGGITVEP
Ga0126309_100254456	3300010039	Serpentine Soil	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAI
Ga0126309_100350217	3300010039	Serpentine Soil	LAGYLPKEWSGKRVAVRFTRGRGFDARLVGDNAGGL
Ga0126309_100569411	3300010039	Serpentine Soil	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGITVEPIKEEDA
Ga0126309_100686731	3300010039	Serpentine Soil	LAGYLPKEWNGQRVAVRFGSGRGFDARLVDNNAGGITVEAIKEE
Ga0126309_102137472	3300010039	Serpentine Soil	LAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAI
Ga0126309_105702272	3300010039	Serpentine Soil	LAGYLPKEWNGQRVAVRFGSGRGFDARLVDNNAGGITVEAIKEEGTEEDHALRA
Ga0126309_112075131	3300010039	Serpentine Soil	LAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEGTEEDHALRA
Ga0126308_100130181	3300010040	Serpentine Soil	LAGYLPKEWNGQRVAVRFGSGRGFDARLVENNAGG
Ga0126308_102836113	3300010040	Serpentine Soil	MGGAMAGYLPKEWNGQRVAVRFARGRGFDARLVENNAGGITVEAIKEEGAEEDHARRAF
Ga0126308_111104961	3300010040	Serpentine Soil	MGGALAGYLPKEWNGQRVAVRFARGRGFDARLVENNAGGITVEAIKEEGAEEDHARRAF
Ga0126308_111285552	3300010040	Serpentine Soil	LAGYLPKEWNGQRVAVRFGSGRGFDARLVENNAGGITVEAIKEEGAEEDHARRAFVPWAA
Ga0126312_100084431	3300010041	Serpentine Soil	LANRGGALAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPVKEE
Ga0126312_1002282711	3300010041	Serpentine Soil	LAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEGTEEDHA
Ga0126312_101097865	3300010041	Serpentine Soil	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGITVEPI
Ga0126312_101190831	3300010041	Serpentine Soil	MLAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAG
Ga0126312_102113762	3300010041	Serpentine Soil	LAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGLTVEPIKEEDAESEEKSARSAFVP*
Ga0126312_102807561	3300010041	Serpentine Soil	VAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPVKEDAEEEHARR
Ga0126312_107042962	3300010041	Serpentine Soil	LAGYLPKEWNGQRVAVRFGRGRGFDARLVSDNAGGITVEAIKEEGAEEDHARRAFVPWAA
Ga0126314_100647185	3300010042	Serpentine Soil	LAGYLPKEWNGKRVAVRFARGRGFDARLVSDNAGGLTVEPVKEDDEDDEERARS
Ga0126314_102148141	3300010042	Serpentine Soil	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEGT
Ga0126314_108445451	3300010042	Serpentine Soil	VAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGG
Ga0126314_111014641	3300010042	Serpentine Soil	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGIT
Ga0126314_112332542	3300010042	Serpentine Soil	VLAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGIT
Ga0126314_114926921	3300010042	Serpentine Soil	LAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPVKEEDAEEEHA
Ga0126310_100275459	3300010044	Serpentine Soil	LAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEGTEE
Ga0126310_100319734	3300010044	Serpentine Soil	MGGALAGYLPKEWNGKRIAVRFARGRGFDARLVGDNAGGITVEPVKEEDAENEEE
Ga0126310_102044331	3300010044	Serpentine Soil	LAGYLPKEWNGKRVAVRFGSGRGFDARLVDNNAGGI
Ga0126310_106007881	3300010044	Serpentine Soil	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEGTEEDHALRAFVPWAA
Ga0126310_106879321	3300010044	Serpentine Soil	LAGYLPKEWNGKRVAVRFTQGRGFDARLVGDNAGGI
Ga0126310_107196641	3300010044	Serpentine Soil	VLAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGLT
Ga0126310_112565022	3300010044	Serpentine Soil	VAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGLTVEPI
Ga0126310_113194911	3300010044	Serpentine Soil	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGIT
Ga0126310_113632011	3300010044	Serpentine Soil	LPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPINEDAEEDARSAFVPW
Ga0126311_100237891	3300010045	Serpentine Soil	LAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGIT
Ga0126311_108657011	3300010045	Serpentine Soil	LAGYLPKEWNGQRVAVRFARGRGFEARLVDNNAGGLTVEAIKEEDAEEEHARRAFVPW
Ga0126311_112157792	3300010045	Serpentine Soil	LAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITV
Ga0126311_112626822	3300010045	Serpentine Soil	MAGYLSKEWNGQRVAVRFGSGRGFDARLVDNNAGGIT
Ga0126311_116692901	3300010045	Serpentine Soil	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEA
Ga0126311_117829422	3300010045	Serpentine Soil	LAGYLPKEWNGKRVAVRFARGRGFDARLVSDNAGGITVEPIKEDEEDDEERARSAF
Ga0126311_119248361	3300010045	Serpentine Soil	LAGYLPKEWNGQRVAVRFARGRGFDARLVDNNAGGITVEAIK
Ga0126306_102367441	3300010166	Serpentine Soil	MAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGITVEPVKEEDAEEEHARRAFVPWSAVRY
Ga0126306_106812871	3300010166	Serpentine Soil	LAGYLPKEWNGQRVAVRFGRGRGFDARLVDNNAGGITVEAIKEEGAEEDHARRAFVPW
Ga0126306_110188072	3300010166	Serpentine Soil	LAGYLSKEWNGQRIAVRFESGRGFDAMLVDNNAGGITVEAIKEEGAEEDHARR
Ga0126306_111035441	3300010166	Serpentine Soil	MGGALAGYLPKEWNGKRVAVRFARGRGFDARLVDNNAGGITVEPIKEEDAEEE
Ga0126306_115219161	3300010166	Serpentine Soil	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGITVEPIKEDAEEEDA
Ga0136631_103036452	3300012043	Polar Desert Sand	LAGYLPKEWNGQRVAVRFARGRGFDARLVDNNAGGI
Ga0136621_10611203	3300012092	Polar Desert Sand	LAGYLPKEWNGQRVAVRFGRGRGFDARLVDNNAGGITVEAIKEEGAEAKPDHARR
Ga0136632_100303041	3300012093	Polar Desert Sand	MAGYLPKGWNGKRVTVRFGSGRGFDARLVGDNAGGITVET
Ga0136632_102089811	3300012093	Polar Desert Sand	LAGYLPKEWNGKRVAVRFGSGRGFDARLVDNNAGGITVEAIKEEDAEE
Ga0136615_100667024	3300012678	Polar Desert Sand	LAGYLPKEWNGQRVAVRFGRGRGFDARLVDNNAGGITVEAIKEEGAEEDHA
Ga0136613_104726791	3300012681	Polar Desert Sand	VDRGGALAGYLPKEWNGQRVAVRFARGRGFDARLVDNNAGGITVEAIKEEGAEEDHARRA
Ga0136614_105969192	3300012684	Polar Desert Sand	LAGHLPKEWNGQRVAVRFARGRGFDARLVDNNAGGITVEAIKEEGAEED
Ga0183260_107905621	3300017787	Polar Desert Sand	LAGYLPKEWNGQRVAVRFGRGRGFDARLVDNNAGGITVE
Ga0183260_108835921	3300017787	Polar Desert Sand	MAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVETIKEGTDEE
Ga0190275_1001848210	3300018432	Soil	LAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEGTEEDH
Ga0190275_102428465	3300018432	Soil	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEGTEEDHALRAFV
Ga0190275_109861721	3300018432	Soil	LAGYLPKEWNGQRVAVRFGSGRGFDARLVDNNAGGITVEAIKEEGA
Ga0190275_121782391	3300018432	Soil	MAGYLPKGWNGKRVAVRFARGRGFDARLVGDNAGGITVEPIKEDI
Ga0190269_100694285	3300018465	Soil	MAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGLTVEPIEEDAEEERARSAFVPWAAV
Ga0190268_102308483	3300018466	Soil	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGITVEPVKEEDAEDEE
Ga0190268_110195591	3300018466	Soil	LAGYLSKEWNGQRVAVRFARGRGFDARLVDNNAGGITVEAIKEEGAEE
Ga0190268_119574402	3300018466	Soil	VLAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEG
Ga0190270_109310594	3300018469	Soil	LAGYLPKEWNGQRVAVRFARGRGFDARLVENNAGG
Ga0190271_101455341	3300018481	Soil	LAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGLTVEPIKEEDAQDEEESARSAFVPW
Ga0190271_123814791	3300018481	Soil	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGLTVEPIKEEDAQDEEESARSAFVPW
Ga0196959_101616611	3300021184	Soil	LAGYLPKEWNAKRVAVRFARGRGFDARLVGDNAGGITVEPIKEDAEDEEERARSAFVP
Ga0307276_100158804	3300028705	Soil	MAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPIEEDAEEEHARSAFVP
Ga0307285_101955352	3300028712	Soil	MAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPIEEDAEEEHARSAFVPWTAV
Ga0307297_100026056	3300028754	Soil	MAGYLPKGWNGKRVAVRFVQGRGFDARLVDNSAGGITVEPIREE
Ga0307408_1019393361	3300031548	Rhizosphere	LAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGITVEPVKEEDAEDEEERARSAFVPW
Ga0307413_108520541	3300031824	Rhizosphere	LAGYLSKEWNGQRVAVRFGSGRGFDARLVENNAGGITVEAIKEEGTEEDRALRAFVPW
Ga0307406_117579441	3300031901	Rhizosphere	LAGYLPKEWNGKRVAVRFTRGRGFDARLVSDNAGGL
Ga0307409_1003879021	3300031995	Rhizosphere	MAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEG
Ga0307409_1010365941	3300031995	Rhizosphere	LAGYLPKEWNGQRVAVRFTRGRGFDARLVENNAGGITVEA
Ga0307409_1017117661	3300031995	Rhizosphere	LAGYLPKDWNGQRVAVRFARGRGFDARLVENNAGGI
Ga0307416_1021447012	3300032002	Rhizosphere	VAGYLPKEWSGKRIAVRFGTGRGFDARLVGDNAGGITVEPIKEEEEDAEE
Ga0307414_106306941	3300032004	Rhizosphere	LAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEPVKEEDAEEEHAR
Ga0307415_1013473161	3300032126	Rhizosphere	VLAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVE
Ga0307415_1018774732	3300032126	Rhizosphere	LAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGITVEP
Ga0334916_023857_579_749	3300034133	Hypolithic Biocrust	MAGYLPKEWSGKRVAVRFTRGRGFDARLVGDNAGGLTVEPIEEDAEEERRARSAFVP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079464

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences