Basic Information | |
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Family ID | F079461 |
Family Type | Metagenome |
Number of Sequences | 115 |
Average Sequence Length | 46 residues |
Representative Sequence | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENSLKGTVPSN |
Number of Associated Samples | 67 |
Number of Associated Scaffolds | 115 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 95.61 % |
% of genes near scaffold ends (potentially truncated) | 95.65 % |
% of genes from short scaffolds (< 2000 bps) | 93.91 % |
Associated GOLD sequencing projects | 57 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.38 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (54.783 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.217 % of family members) |
Environment Ontology (ENVO) | Unclassified (73.913 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (67.826 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 47.95% β-sheet: 0.00% Coil/Unstructured: 52.05% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.38 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Tropical Forest Soil Soil Forest Soil Soil Tropical Peatland Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
AF_2010_repII_A001DRAFT_101298142 | 3300000793 | Forest Soil | MNRLLAPISIMLAVILLVMNFPALAVDRTFQIEVENSLRGTVPSNWWLHAS |
Ga0066388_1038737081 | 3300005332 | Tropical Forest Soil | MNRLLAPISIMLAVILLVVNFPALAVDRTFQIEVENSLRGTVPSNWWLH |
Ga0066388_1046115092 | 3300005332 | Tropical Forest Soil | MEMAMNRLLAPISIMLAVILLVVNFPALAVDRTFQIEVENSLRGTVPSNWWLHA |
Ga0066388_1052930271 | 3300005332 | Tropical Forest Soil | MNRPLAPTSGLLAAILLAVNVPTLAMDRTFQIEVEKSLKGAVPSNWWLRSSWRDQTLVV |
Ga0066388_1053904331 | 3300005332 | Tropical Forest Soil | MKRLLAPTPILLAVILQAVNTPAISADRTFQIEVENSLKETVPSNWWLHASWRDQ |
Ga0066388_1055560811 | 3300005332 | Tropical Forest Soil | MNRLLAPISIMLAVILLVVNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWRDQTLVVF |
Ga0066388_1087010132 | 3300005332 | Tropical Forest Soil | MKLLLALTSILLAIILLAVNTPAIAVDRTFQIEVENSLKGTVP |
Ga0070713_1011068101 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVENSLKGT |
Ga0070705_1003461564 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | MTRLLTSTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSNWWLHASWRDQTLVVF |
Ga0070699_1002699061 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | MTRLLTPTSILLTVILLAVIIPALAVDRTFQIEVENSLKGTVPSNWWLHAS |
Ga0066903_1046929042 | 3300005764 | Tropical Forest Soil | MTRLLAPTLILSAVILLAVNVPAPAVDRTFQIEIENSLKGTVPPS |
Ga0066903_1091494331 | 3300005764 | Tropical Forest Soil | MARLLAPTSNLLAVILLAMNVPALAVDRTFQTEVEN |
Ga0070717_119780611 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MTRLLTPTSILLTVILLAVNMPALAVDRTFQIEVENSLKGTVP |
Ga0126374_106214782 | 3300009792 | Tropical Forest Soil | MAMNRLLAAISIVLAVILLVVNFPALAVDRTFQIEVENSLRGTVPSNWWV |
Ga0126380_108729411 | 3300010043 | Tropical Forest Soil | MKRLLAPTPILLAVTLLAVNTPAIAVDRTFQSEVENSLKGTVPSNWW |
Ga0126384_109845803 | 3300010046 | Tropical Forest Soil | MNRLLAPISIMLAVILLVMNFPALAVDRTFQIEVENSL |
Ga0126373_124121201 | 3300010048 | Tropical Forest Soil | MKYLLAPTLAVILLAVNTPAIAVDRTFQIEVESSLKGTVPSNWWLHASWRDQT |
Ga0126370_116976831 | 3300010358 | Tropical Forest Soil | MAMNRLLAAISIMLAVILLVVNFPALAVDRTFQIE |
Ga0126372_115545472 | 3300010360 | Tropical Forest Soil | MEATMTRLLTLTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSNWWQHASW |
Ga0126372_116202562 | 3300010360 | Tropical Forest Soil | MKRLLALTSILLVMILLAVNTPAIAVDRTFQIEVENSLKGTVPSNWWLHASW |
Ga0126377_132389181 | 3300010362 | Tropical Forest Soil | MKRLLAPTPILLAVTLLAVNTPAIAVDRTFQSEVENSLKGT |
Ga0126379_109144903 | 3300010366 | Tropical Forest Soil | MAMNRLLAPISIMLAVILLVVNFPALAVDRTFQIEVE |
Ga0124850_10239185 | 3300010863 | Tropical Forest Soil | MEATMTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSNWWLHAS |
Ga0126369_126444281 | 3300012971 | Tropical Forest Soil | MKRLLAPTPILLAVTLLAVNTPAIAVDRTFQSEVENSLKGTVPSNWWL |
Ga0182036_102980071 | 3300016270 | Soil | MNRLLAPISIMLAVILLVMNFPALAVDRTFQIEVENSLRGTVPSNWW |
Ga0182036_107021011 | 3300016270 | Soil | MNRLLAPISIMVAVILLVMNFPALAVDRTFQIEVEN |
Ga0182036_117736661 | 3300016270 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENS |
Ga0182041_107162861 | 3300016294 | Soil | MNRLLAPISIMLAVILLVMNFPALAVDRTFQIEVENS |
Ga0182041_109827031 | 3300016294 | Soil | MNRLLAPISIMLAVILLVVNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWRDQTLVV |
Ga0182041_110501321 | 3300016294 | Soil | MKRLISLTSILLAVTLLAVNTPAIAVDRTFQIEVENILKGTVPSNS |
Ga0182041_111743392 | 3300016294 | Soil | MARLLAPTLNLLAVILLAMNVPALAVDRTFQTEVENSLK |
Ga0182033_120812132 | 3300016319 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENSLKGTVPSNWWLHASWRDQTLVVF |
Ga0182035_114508472 | 3300016341 | Soil | MARLLAPTSNVLAMILLAMNVPAHEVDRKFQIDVENSLKDTV |
Ga0182032_116388792 | 3300016357 | Soil | MNRLLAPISIMLAGILLVVNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWRD |
Ga0182040_114569881 | 3300016387 | Soil | MTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSNWWLHASW |
Ga0182040_119468251 | 3300016387 | Soil | MTRLLAPTSILLTVILLAVNVPALAVDRTFQIEVENSLKGTVPPSWWLHASWLANNFRGWRWR |
Ga0182037_113691181 | 3300016404 | Soil | MKRLLAATSIPLAMTLLAVNTPAIAVDRTFQIEVENSLKGTV |
Ga0182039_114072871 | 3300016422 | Soil | MNRLLAPISIMLAVILLAINFPALAVDPTFQVEVENS |
Ga0182038_105476711 | 3300016445 | Soil | MKRLLAATSIPLAMTLLAVNTPAIAVDRTFQIEVENS |
Ga0187783_110378601 | 3300017970 | Tropical Peatland | MQRLLAPALLLLAAILRAVNTPAAAADRSFQIEVENSLKGT |
Ga0187781_110385412 | 3300017972 | Tropical Peatland | MAHDDPTEMTMNRLLAPISITLAAIALAVNFPALAVDRTFQIEVENSLKGT |
Ga0187770_100447721 | 3300018090 | Tropical Peatland | MTRLLTPVSMLLAMILLSVNVPALAVDRTFQIEVENS |
Ga0187770_102672852 | 3300018090 | Tropical Peatland | MKHLLAPNSILLAVILAVNTPAIAVDRTFQIEVENSLKGTVPPSWWLHASWRDQ |
Ga0126371_116313921 | 3300021560 | Tropical Forest Soil | MNRLLAPISIKLAVILLVVNFPALAVDRTFQIEVENSLRGTVPSN |
Ga0209523_10227831 | 3300027548 | Forest Soil | MTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSNWWLHA |
Ga0318534_103184242 | 3300031544 | Soil | MNRLLAPISIMLAVILLVVNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWREQ |
Ga0318538_106658082 | 3300031546 | Soil | VARLLAPTSILLAVILLAMNVPALAVDRTFQSEVEN |
Ga0318515_104559871 | 3300031572 | Soil | MTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSNWWLHASWR |
Ga0310915_101955621 | 3300031573 | Soil | MARLLAPTSNLLAVILLAMNVPALAVDRTFQSEVENSLKGTV |
Ga0318561_103955731 | 3300031679 | Soil | MARLLAPTSKLIAVILLAMNLPALAVDRTFQNEVENSLKETV |
Ga0318561_107997832 | 3300031679 | Soil | MTRLLAPTPILLAVILLAVNVPALAVDRTFQIEVESSLKGTVPS |
Ga0306917_101531131 | 3300031719 | Soil | MNRLLAPISIMLAVILLVVNFPALAVDRTFQIEVENSL |
Ga0306917_107395871 | 3300031719 | Soil | MKHLLAPNSILLAVILSAVNTPAIAVDRTFQIEVENSLKGTVQS |
Ga0318500_100954676 | 3300031724 | Soil | LIPDALMEATMTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSNWWREL |
Ga0306918_102884942 | 3300031744 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENSLKGT |
Ga0306918_109630842 | 3300031744 | Soil | MTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPS |
Ga0318554_101896501 | 3300031765 | Soil | PTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSNWWRELA |
Ga0318509_104674381 | 3300031768 | Soil | MNRLLAPISIMLAVILLVVNFPALAVDRSFQIEVENSLRGTVPS |
Ga0318543_105606291 | 3300031777 | Soil | MARLLTVTSNLLAVILLAMSVPALAVDRTFQVEVENSLKGTVPSNWWLRAS |
Ga0318547_109892701 | 3300031781 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENSLKGTVPSNWWLHASWRDQSLVVF |
Ga0318529_101443321 | 3300031792 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENSLKGTV |
Ga0318565_103737263 | 3300031799 | Soil | MTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVE |
Ga0318565_106429001 | 3300031799 | Soil | MNRLLAPISIMLAVILLVVNFPALAVDRTFQIEVENSLRG |
Ga0318497_103343891 | 3300031805 | Soil | MNRLLAPISIMLAVILLVMNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWRDQT |
Ga0318511_105262411 | 3300031845 | Soil | MNRLLAPISIMLAVILLVMNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWRDQTL |
Ga0306925_104247313 | 3300031890 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENSLKGTVPPSWWLHASWRDQTLVVF |
Ga0306925_122223071 | 3300031890 | Soil | MNRLLAPISIMLAVILLVMNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWR |
Ga0306925_122613241 | 3300031890 | Soil | MNRLLAPISIMLAVILLAINFPALAVDRTFQVEVENSLRETVPSNWWLHASW |
Ga0318520_101520612 | 3300031897 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIELE |
Ga0306923_101551664 | 3300031910 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENSLKGTVPPSWWLHAS |
Ga0306923_103800841 | 3300031910 | Soil | MKRLLTPQLILLAVTMLAVNTPAIAVDRTFQIEVENSLKGTVPPSWWLHASWRDQTL |
Ga0306923_107342244 | 3300031910 | Soil | MTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVEN |
Ga0306923_109372922 | 3300031910 | Soil | MKRLIAPTSILLAVTLLAVNTPAIAVDRTFQIEVENILKGTVPSNWW |
Ga0306923_113730861 | 3300031910 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIELENSLKGTVPSNWWLHASWRDQTLV |
Ga0306923_119107631 | 3300031910 | Soil | MNRLLAPISIMVAVILLVVNFPALAVDRTFQIEVE |
Ga0306921_106199592 | 3300031912 | Soil | MNRLLAPISIMLAGILLVVNFPALAVDRTFQIEVENSLRGTVPSNW |
Ga0306921_106857332 | 3300031912 | Soil | MNRLLAPISIMVAVILLVMNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWRDQ |
Ga0306921_118469031 | 3300031912 | Soil | MARLLATSNLLAVILLAMNVPALAVDRTFQTEVENS |
Ga0306921_127175231 | 3300031912 | Soil | MKHLLAPTPILLAVILSAVNTPAIAVDRTFQIEVENSLKGTVPSNWWLHASWRNQTLV |
Ga0310912_107828591 | 3300031941 | Soil | MKRLLTPQLILLAVTMLAVNTPAIAVDRTFQIEVENS |
Ga0310912_112601101 | 3300031941 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENSLKG |
Ga0310916_100449455 | 3300031942 | Soil | MNRLLAPISIMLAVILLVVNFPALAVDRSFQIEVENSL |
Ga0310913_101636842 | 3300031945 | Soil | MTRLLAPTPILLTVILLAVNVPALAVDRTFQIEVESSLKGTVPSSWWLRAS |
Ga0310913_109754752 | 3300031945 | Soil | MNRLLAPISIMLAVILLVVNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWRDQT |
Ga0306926_102640542 | 3300031954 | Soil | MTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSNWWRELA |
Ga0306926_109767342 | 3300031954 | Soil | MARLLATSNLLAVILLAMNVPALAVDRTFQTEVENSLKRT |
Ga0306926_118854331 | 3300031954 | Soil | MKHLLAPTPILLAVILSAVNTPAIAVDRTFQIEVENSLKGTVP |
Ga0306926_125039191 | 3300031954 | Soil | MTRLLAPTLNLLAVILLAVNVPALAVDRTFQIEIE |
Ga0306926_127694832 | 3300031954 | Soil | MNRLLDPISIMLAVILLVVNFPALAVDRTFQIEVENSLRGTVPSID |
Ga0306922_107688111 | 3300032001 | Soil | MARLLAPTSNLLAVILLAMNVPALAVDRTFQSEVENSLKGTVPSN |
Ga0306922_108013172 | 3300032001 | Soil | MKRLLTPQLILLAVTMLAVNTPAIAVDRTFQIEVENSLK |
Ga0306922_112976732 | 3300032001 | Soil | MNRLLAPISIMLAVILLVVNFPALAVDRTFQIEVEN |
Ga0306922_113853951 | 3300032001 | Soil | MNRLLAPISIMLAVILLVVNFPALAVDRSFQIEVENSLRGTVPSN |
Ga0306922_116029962 | 3300032001 | Soil | VARLLAPTSILLAVILLAMNVPALAVDRTFQSEVENSLKGTVPSNWWLR |
Ga0310911_102951093 | 3300032035 | Soil | MNRLLAPISIMLAVILLVMNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWRD |
Ga0310911_103939701 | 3300032035 | Soil | MARLLTLTSNLLAVILLAMSFPALAVDRTFQVEVENS |
Ga0318549_101037122 | 3300032041 | Soil | MKRLLAPTSILLAVILLAVNTPAIAVDRTFQIELENSLK |
Ga0318532_103364891 | 3300032051 | Soil | MARLLAPTSNLLAVILLAMNVPSLAVDRTFQTEVENSLKATVPSNW |
Ga0318570_102490532 | 3300032054 | Soil | MTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSSWWLHAS |
Ga0318533_106631942 | 3300032059 | Soil | MKRLIAPTSILLAVTLLAVNTPAIAVDRTFQIEVENILK |
Ga0318553_103361843 | 3300032068 | Soil | MTRLLTPTSILLTVILLAVNIPALAVDRTFQIEVENSLKGTVPSNWWLHASWRVPTKS |
Ga0306924_104202081 | 3300032076 | Soil | MNRLLAPISIMVAVILLVMNFPALAVDRTFQIEVENSLRGTVPSNWWLHAS |
Ga0306924_106632182 | 3300032076 | Soil | MKRLLAATSIPLAMTLLAVNTPAIAVDRTFQIEVENSLKGTVPSN |
Ga0306924_118933602 | 3300032076 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIELENSLKGTVPSNWWLHA |
Ga0306924_124903481 | 3300032076 | Soil | VARLLAPTSILLAVILLAMNVPALAVDRTFQSEVENSLKGTVPSNWWL |
Ga0318577_102924262 | 3300032091 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVVNSLKGT |
Ga0318577_104578531 | 3300032091 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENSLKGTVPSN |
Ga0318540_103745911 | 3300032094 | Soil | MARLLAPTLNLLAVILLAMNVPALAVDRTFQTEVENSLKGTVPSN |
Ga0306920_1000910298 | 3300032261 | Soil | MNRLLAPISIMLAVILLVMNFPALAVDRTFQIEVENSLRGTVPSNWWLHASWRDQTLVVF |
Ga0306920_1002288675 | 3300032261 | Soil | MNRLLAPISIMLAVILLVVNFPALAVDRSFQIEVENSLRGTVPSNWWLHASWRDQTLVVF |
Ga0306920_1006386161 | 3300032261 | Soil | MNRLLAPISIMVAVILLVVNFPALAVDRTFQIEVENSLR |
Ga0306920_1012035501 | 3300032261 | Soil | MKRLLTPQLILLAVTMLAVNTPAIAVDRTFQIEVENSLKGTVPPSWWLHA |
Ga0306920_1019788951 | 3300032261 | Soil | MKRLLAPTSILLAMILLAVNTPAIAVDRTFQIEVENNLKGTVPSNWWL |
Ga0306920_1033106072 | 3300032261 | Soil | MKRLLAPTAILLAMILLAVNTPAIAVDRTFQIEVENSLKGTVPS |
Ga0310914_116028861 | 3300033289 | Soil | MKRLIAPTSILLAVTLLAVNTPAIAVDRTFQIEVENI |
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