Basic Information | |
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Family ID | F079460 |
Family Type | Metagenome |
Number of Sequences | 115 |
Average Sequence Length | 39 residues |
Representative Sequence | MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Number of Associated Samples | 60 |
Number of Associated Scaffolds | 115 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 11.30 % |
% of genes near scaffold ends (potentially truncated) | 48.70 % |
% of genes from short scaffolds (< 2000 bps) | 84.35 % |
Associated GOLD sequencing projects | 53 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (52.174 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (28.696 % of family members) |
Environment Ontology (ENVO) | Unclassified (49.565 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (73.913 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 83.78% β-sheet: 0.00% Coil/Unstructured: 16.22% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Vadose Zone Soil Tropical Forest Soil Soil Forest Soil Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
AF_2010_repII_A01DRAFT_10198321 | 3300000580 | Forest Soil | MSLRQFIPAVIVGLLLAALLLWLTLGWLLDVITLPVG* |
AF_2010_repII_A1DRAFT_100138663 | 3300000597 | Forest Soil | MSLRQFLPAVIAGLLLAALLLWLTLGWLLDAITLPVG* |
AF_2010_repII_A1DRAFT_101329753 | 3300000597 | Forest Soil | MSPRQFFIPAVIVGLLLAALLLSLTLGWLLDAYAACWLA |
AF_2010_repII_A100DRAFT_10188432 | 3300000655 | Forest Soil | MSLKQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG* |
Ga0066388_1028849563 | 3300005332 | Tropical Forest Soil | MLERQRIRTGPKRFIPAVIAGLLLAALLLWLTLGWLLDAITLPA |
Ga0066903_1002910614 | 3300005764 | Tropical Forest Soil | MSLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0066903_1003005844 | 3300005764 | Tropical Forest Soil | MSLRQFIPTVIVGLLLSALLLWLTLGWLLDAITLPVG* |
Ga0066903_1014784193 | 3300005764 | Tropical Forest Soil | MSPRQFILAVTAGLLLSALLLWLTLAWLLNAITLPVG* |
Ga0066903_1018786933 | 3300005764 | Tropical Forest Soil | MSPKLFIPGVIVGLLLAALLLWLMLGFLLDEITLPVG* |
Ga0066903_1026872602 | 3300005764 | Tropical Forest Soil | MSLKQFIPAVIVGLLLSALLLWLTLGWLLDAVTLPVG* |
Ga0066903_1027330663 | 3300005764 | Tropical Forest Soil | LCSLVMSLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0066903_1036071103 | 3300005764 | Tropical Forest Soil | MSPRQFFIPAVIVGLLLAALLMWLTLAPLLDAITLPVG* |
Ga0066903_1040090031 | 3300005764 | Tropical Forest Soil | VLGVFLRLSLRQFIPAVIVGLLLAALLLWLTLGWLLDAI |
Ga0066903_1055522222 | 3300005764 | Tropical Forest Soil | MSLRQFIPAVIVGLLLAALLLWLTLAWLLDAITLPVG* |
Ga0066903_1059502341 | 3300005764 | Tropical Forest Soil | MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0066903_1063950822 | 3300005764 | Tropical Forest Soil | VQQFIPAVIAGLLLAALLLWLTLGWLLNTITLPVG* |
Ga0066903_1088032761 | 3300005764 | Tropical Forest Soil | VNRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLRVG* |
Ga0070717_102254022 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MSLRQFIPAVIVGLLLAALLLWFTLGWLLDAITLPVG* |
Ga0126374_106502522 | 3300009792 | Tropical Forest Soil | MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0126374_111516272 | 3300009792 | Tropical Forest Soil | MSPRQFFIPAVIVGLLLAALLLSLTLGWLLDAITLPVG* |
Ga0126380_113935682 | 3300010043 | Tropical Forest Soil | MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLQVRDTKA* |
Ga0126384_105690271 | 3300010046 | Tropical Forest Soil | MSPKRFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0126384_116086272 | 3300010046 | Tropical Forest Soil | MSLRQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG* |
Ga0126382_119223661 | 3300010047 | Tropical Forest Soil | HRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0126373_110141552 | 3300010048 | Tropical Forest Soil | MSPKRFIPGVIAGLLLAALLLWLTLGWLLDAITLPAG* |
Ga0126373_120820381 | 3300010048 | Tropical Forest Soil | GDRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0126373_123037432 | 3300010048 | Tropical Forest Soil | MSLRQFIPAVIAGLLLAALLLWLTLGWLLNTITLPVG* |
Ga0126370_101246754 | 3300010358 | Tropical Forest Soil | MSPKRFIPAVIAGLLLAALLLWLTLGWLLDAITLPAG* |
Ga0126370_125109082 | 3300010358 | Tropical Forest Soil | MSLRQFILAVIVGLLLAALLLWLTLARLLDAITLPVG* |
Ga0126376_101265271 | 3300010359 | Tropical Forest Soil | VSLRQFILAVIVGLLLAALLLWLTLAWLLDAITLPVG* |
Ga0126378_103072561 | 3300010361 | Tropical Forest Soil | MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPV |
Ga0126378_107382542 | 3300010361 | Tropical Forest Soil | MSLRQFIPAIIAGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0126378_130543732 | 3300010361 | Tropical Forest Soil | RMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0126379_110916283 | 3300010366 | Tropical Forest Soil | MSLRQFIPAVIVGLLLATLLLWLTLGWLLDAITLPVG* |
Ga0126379_119424823 | 3300010366 | Tropical Forest Soil | MSPKRFIPAVIAGLLVAALLLWLTLGWLLDAITLPAG* |
Ga0126379_121143051 | 3300010366 | Tropical Forest Soil | MSLWQFIPAVIAGLLLAALLLWFTLGWLLTTITLPVG* |
Ga0126381_1002527251 | 3300010376 | Tropical Forest Soil | MSLKQFIPAVIVGLLLAALLLWLTLGWLLNAITLPVG* |
Ga0126381_1003542781 | 3300010376 | Tropical Forest Soil | HHASHHMSLRQFIPAVIVGLLLAALLLWLALGWLLDAITLPVG* |
Ga0126381_1005134784 | 3300010376 | Tropical Forest Soil | MSLKRFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0126381_1012864161 | 3300010376 | Tropical Forest Soil | RMSPKRFIPAVIAGLLVAALLLWLTLGWLLDAITLPAG* |
Ga0126381_1039515332 | 3300010376 | Tropical Forest Soil | MSLRQFIPAVIVGLLLTALLLWLTLGWLLDAITLPVG* |
Ga0126383_103583532 | 3300010398 | Tropical Forest Soil | MSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG* |
Ga0126383_105047873 | 3300010398 | Tropical Forest Soil | MNLRSFIPAVIVGLLLAALLLWLTLGWLLDAITLSAG* |
Ga0124850_10369181 | 3300010863 | Tropical Forest Soil | KQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG* |
Ga0124850_11092901 | 3300010863 | Tropical Forest Soil | MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLRVG* |
Ga0124844_12443381 | 3300010868 | Tropical Forest Soil | MSLRQFILAVTAGLLLSALLLWLTLARLLDAITLPAG* |
Ga0150983_150452302 | 3300011120 | Forest Soil | MSLRQFIPAIIVGLLLAALLLWLTLAWLLDAITLPVG* |
Ga0137377_110828682 | 3300012211 | Vadose Zone Soil | MSLKHFIPAVIVGLLVAALLLWLTLGWLLNAITLPVG* |
Ga0164303_104079601 | 3300012957 | Soil | MSLRQFIPAIIVGLLLASLLLWLTLAWLLDAITIPVG* |
Ga0126369_104167664 | 3300012971 | Tropical Forest Soil | LIREQFIPAVIVGLLLAALLLWLTLGWLLDAITLPAG* |
Ga0126369_111650161 | 3300012971 | Tropical Forest Soil | MSLRQFIPVVIVGLLLAALLLWLTLAWLLDAITLPVG* |
Ga0126369_111935562 | 3300012971 | Tropical Forest Soil | MSLRHFIPAVIAGLLLAAVPLWLTLDWLLNAITMPVG* |
Ga0126369_134135072 | 3300012971 | Tropical Forest Soil | MSPRQFFIPAVIVGLLLAALLLSLTLGWLLDAITL |
Ga0182041_100525114 | 3300016294 | Soil | LRQFILAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0182041_101519745 | 3300016294 | Soil | MTAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA |
Ga0182033_100910761 | 3300016319 | Soil | ESHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG |
Ga0182032_108138891 | 3300016357 | Soil | RHEHRSARCMSLKQFIPAVIVGLLVAVLLLWLTLGWLLDAITLPVG |
Ga0182032_109946062 | 3300016357 | Soil | ESHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG |
Ga0182034_100880893 | 3300016371 | Soil | VRSFTNSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG |
Ga0182034_102167522 | 3300016371 | Soil | HESHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG |
Ga0182034_102903551 | 3300016371 | Soil | MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPV |
Ga0182034_113738151 | 3300016371 | Soil | CMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG |
Ga0182034_116749291 | 3300016371 | Soil | MGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPV |
Ga0182037_101598123 | 3300016404 | Soil | LRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG |
Ga0182037_102235141 | 3300016404 | Soil | VIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA |
Ga0182037_115175862 | 3300016404 | Soil | MNSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG |
Ga0182038_101762355 | 3300016445 | Soil | HRMSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA |
Ga0126371_101753935 | 3300021560 | Tropical Forest Soil | VSLRQFILAVIVGLLLAALLLWLTLAWLLDAITLPVG |
Ga0126371_102950321 | 3300021560 | Tropical Forest Soil | MSLRQFLPAVIAGLLLAALLLWLTLGWLLDAITLPVG |
Ga0126371_115334963 | 3300021560 | Tropical Forest Soil | MSLKQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG |
Ga0126371_136410111 | 3300021560 | Tropical Forest Soil | MSLRQFIPVVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0207700_114772592 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MSLRQFIPAIIVGLLLAALLLWLTLAWLLDAITLPVG |
Ga0318516_102259922 | 3300031543 | Soil | MSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG |
Ga0318541_102973811 | 3300031545 | Soil | MSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0318573_102596141 | 3300031564 | Soil | MGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0318515_102066981 | 3300031572 | Soil | HRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG |
Ga0310915_100315331 | 3300031573 | Soil | RFGCGVRSFTNSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG |
Ga0310915_100542803 | 3300031573 | Soil | MSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA |
Ga0310915_101367392 | 3300031573 | Soil | MSLKQFIPAVIVGLLLAALLLWLTLAWLLDAITLPVG |
Ga0310915_101861073 | 3300031573 | Soil | NSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLSVG |
Ga0310915_110769932 | 3300031573 | Soil | SLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG |
Ga0306917_103080792 | 3300031719 | Soil | MSLRQFIPAVIVGLLLAALLLWLTLAWLLDAITLPVG |
Ga0306917_103918983 | 3300031719 | Soil | CMSLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0318500_105306191 | 3300031724 | Soil | LPQDVGDRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0318501_108380061 | 3300031736 | Soil | SARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG |
Ga0306918_104010951 | 3300031744 | Soil | DVDLCSLVMSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0306918_105873262 | 3300031744 | Soil | MSPRLFIPAVIVGLLLAALLLWLTLGWLLDAITLPAG |
Ga0306918_114032051 | 3300031744 | Soil | ARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG |
Ga0318554_105712571 | 3300031765 | Soil | LRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0318546_100493791 | 3300031771 | Soil | RMGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0318547_106550632 | 3300031781 | Soil | MSLRQFILAVTAGLLLSALLLWLTLAWLLDAITLPVG |
Ga0318576_100865024 | 3300031796 | Soil | YRHRMSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0318512_105177402 | 3300031846 | Soil | LTCVRSFTSLRQFIPAVIAGLLLTALLLWLTLGWLLDAITLPV |
Ga0306919_100432602 | 3300031879 | Soil | MSLRQFILAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0306919_104181421 | 3300031879 | Soil | DLCSLVMSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0306925_100275456 | 3300031890 | Soil | MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG |
Ga0306925_120201951 | 3300031890 | Soil | LKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0306923_115974481 | 3300031910 | Soil | MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLSVG |
Ga0306921_107698541 | 3300031912 | Soil | MSLKQFIPAVIVGLLVAALLLSLTLGWLLDAITLPVG |
Ga0310916_104669761 | 3300031942 | Soil | VFAMNSHRMSLRQFIPAAIAGLLLAALLLWLTLGWLLDAITLPVG |
Ga0310913_103545011 | 3300031945 | Soil | MSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVC |
Ga0310913_112928241 | 3300031945 | Soil | HRVRHEHRSARCMSLKQFIPAVIVGLLVAVLLLWLTLGWLLDAITLPVG |
Ga0310910_109107371 | 3300031946 | Soil | RSARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG |
Ga0306922_103851981 | 3300032001 | Soil | AHRMGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG |
Ga0318507_100795592 | 3300032025 | Soil | SHRARHERRSARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG |
Ga0318559_103029501 | 3300032039 | Soil | TSLRQFIPAVIAGLLLTALLLWLTLGWLLDAITLPVG |
Ga0318532_100474601 | 3300032051 | Soil | ARHERRSARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG |
Ga0318506_104917211 | 3300032052 | Soil | MSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPTSI |
Ga0318540_105581321 | 3300032094 | Soil | MSPRLFIPAVIVGLLLAALLLWLTLGWLLDAITLP |
Ga0306920_10001444811 | 3300032261 | Soil | MSLRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG |
Ga0306920_1001815031 | 3300032261 | Soil | HRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG |
Ga0306920_1026228951 | 3300032261 | Soil | MSLKQFIPAVIVGLLVAVLLLWLTLGWLLDAITLPVG |
Ga0306920_1031347392 | 3300032261 | Soil | MSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLP |
Ga0310914_101448311 | 3300033289 | Soil | ISLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG |
Ga0310914_103448532 | 3300033289 | Soil | MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLSVG |
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