Basic Information | |
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Family ID | F079437 |
Family Type | Metagenome |
Number of Sequences | 115 |
Average Sequence Length | 53 residues |
Representative Sequence | VRLRVPQGIGHRNMLLLNVAADGTVEMPESEAESFLRAGWVRVDAGDPTG |
Number of Associated Samples | 74 |
Number of Associated Scaffolds | 115 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 8.77 % |
% of genes near scaffold ends (potentially truncated) | 87.83 % |
% of genes from short scaffolds (< 2000 bps) | 85.22 % |
Associated GOLD sequencing projects | 65 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.63 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (68.696 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.174 % of family members) |
Environment Ontology (ENVO) | Unclassified (78.261 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (51.304 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 19.23% β-sheet: 10.26% Coil/Unstructured: 70.51% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.63 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Bog Forest Soil Tropical Forest Soil Soil Soil Hardwood Forest Soil Bog Forest Soil Tropical Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI26341J46601_100013564 | 3300003219 | Bog Forest Soil | MLAEGAGRQPIARERRVRLRVPAGIGRINLLHLNVAADGTVRMLESAAESLLRAGWVRVD |
JGI26341J46601_102009272 | 3300003219 | Bog Forest Soil | APERRVRLRVPPGIGHRNMLLLNVAADGTVEMPEAEAESFLRAGWVRVDAGDLAGTRTAV |
JGI26340J50214_100915552 | 3300003368 | Bog Forest Soil | AAGERRVRLRVPPGIGRMNMLHLNVAADGTVEMLESEAESFLRAGWVRVNEGDFLE* |
Ga0062385_100050761 | 3300004080 | Bog Forest Soil | GIGRMNMLHLNVAADGTVEMLESEAESFLRAGWVRVNEGDFLE* |
Ga0062385_108061741 | 3300004080 | Bog Forest Soil | MLAEGAGRQPIARERRVRLRVPAGIGRINLLHLNVAADGTVRMLESAAE |
Ga0062389_1035655191 | 3300004092 | Bog Forest Soil | AEEARGQQARREQRVRLRVPAGIGRINLLHLNVAADGTVEMPEDEAESFLRAGWVRVEAGKPPG* |
Ga0062389_1036160361 | 3300004092 | Bog Forest Soil | RVPPGIGRMNMLHLNVGADGTAEMLESEAESFLRAGWVRVDGGKPPG* |
Ga0062389_1037135291 | 3300004092 | Bog Forest Soil | GIGRMNMLHLNVAADGTVEMLESEAESFLRAGWVRVEAGKPPG* |
Ga0062386_1003924443 | 3300004152 | Bog Forest Soil | GIGHRNMLLLNVAADGTVEMPESEAESFLRAGWVRMEAGGLPE* |
Ga0062388_1000164232 | 3300004635 | Bog Forest Soil | ERRVRLRVPPGIGRMNMLHLNVAADGTVEMLESEAESFLRAGWVRVNEGDFLE* |
Ga0066903_1007583985 | 3300005764 | Tropical Forest Soil | VPAGIGHRNMLLLNVAADGTAEMSEEDAEPLLRAGWVRVDTGDSAE* |
Ga0066903_1036510922 | 3300005764 | Tropical Forest Soil | VPAGIGHRNMLLLNVAADGTAEMSEEDAEPLLRAGWVRVDDKRSTDSNCF* |
Ga0066903_1052485471 | 3300005764 | Tropical Forest Soil | GGLGRQARVEQRVRLRVPSGIGRMNLLHLNVAADGTCEMLESEAESLLRAGWERVDDL* |
Ga0066903_1078916531 | 3300005764 | Tropical Forest Soil | TVRLRVPPGIGRMNMLHLNVAADGTVEMPEDEAESFLRAGWVRVDVGDATV* |
Ga0074044_100256203 | 3300010343 | Bog Forest Soil | MLAEGAGRQPTARERRVPLRVPAGIGRINLLHLNVAADGTVEMLETAAESLLRAGWVRVD |
Ga0126378_101057467 | 3300010361 | Tropical Forest Soil | GEAAKRRTVRLRVPPGIGRMNMLHLNVAADGTVEMPEDEAQSFLRAGWIRVGDGN* |
Ga0126378_119106451 | 3300010361 | Tropical Forest Soil | VRLRVPPGIGRINLLHLNVAADGTVEMPEEEAQSFLRAGWIRVEAG* |
Ga0126381_1016582931 | 3300010376 | Tropical Forest Soil | VRLRVPPGIGRINMLHLNVAADGTVEMPEEEAESFLRAGWVRVVAGDAPA* |
Ga0126381_1047828741 | 3300010376 | Tropical Forest Soil | RERRVRLRVPQGIGRMNLLHLNVASDGTVEMPEAEAESFLRAGWEWADA* |
Ga0182036_115730781 | 3300016270 | Soil | QRRVRLRVPQGIGHRNMLLLNVAPDGTVEMSEEDAEPFLRAGWVRVDGGDARG |
Ga0182033_106261742 | 3300016319 | Soil | VRLRVPPGIGRVNMLHLNVAADGTVEMPEEEAESFLRAGWVRVGDDAE |
Ga0182035_110014073 | 3300016341 | Soil | RAEELRRGEAERQRRVRLRVPQGIGHRNMLLLNVAADGTVEMPESEAESFLRAGWVRVDAGDPTG |
Ga0182035_116970991 | 3300016341 | Soil | EVRRGEAERQRRVRLRVPPGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWVKVDSTA |
Ga0182032_100794121 | 3300016357 | Soil | AHGQQADRERRVRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL |
Ga0182032_110843951 | 3300016357 | Soil | GEAERQRRVRRRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED |
Ga0182032_112736441 | 3300016357 | Soil | ARGQQAQRERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRAGWERVDAGDLAGTRGSGSQ |
Ga0182032_113232172 | 3300016357 | Soil | RVPQGIGRMNLLHLNVGPDGTVEMPEGEAESFLRAGWVRVDTGDLQG |
Ga0182034_103077022 | 3300016371 | Soil | YRQRAGEARGQQAQRERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRAGWERVDAGDLAGTRGSGSQ |
Ga0182040_110989462 | 3300016387 | Soil | LRVPTGIGRMNLLHLNVAADGTLEMPEAEAESFLRAGWVRVDTGEPPG |
Ga0182040_116404802 | 3300016387 | Soil | VPSGIGRMNMLHLGVAADGTVEMQEEEAESFLRAGWVRVDYQ |
Ga0182037_110851632 | 3300016404 | Soil | RPATRRRVRLRVPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGWVRVDYQ |
Ga0182038_100906443 | 3300016445 | Soil | VLGSRFQHERQRRVRLRVPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWVKADAGDGQG |
Ga0210407_110368751 | 3300020579 | Soil | RMRAEAARGQQGGREQRVRLRVPAGIGRMNMLHLNVAADGTCEMLESEAESFLRAGWERVDAGEP |
Ga0210401_112282181 | 3300020583 | Soil | VRLRVAPGIGRMNLLHLNVGSDGTVEMPESEAESFLRAGWVRDD |
Ga0126371_135693481 | 3300021560 | Tropical Forest Soil | RLRVPPGIGRMNLLHLNVGSDGTVELPEEEAQSFLRAGWVRVEAGDAPA |
Ga0209040_101825633 | 3300027824 | Bog Forest Soil | EARRQQAEGDRRVRLRVPQGIGRMNLLHLNVAADGTVEMPESEAESFLRAGWIRVEAGD |
Ga0209040_103043742 | 3300027824 | Bog Forest Soil | RIRLRAPAGIGHRNMLLLNIAADGTVEMPEAEAESFLRAGWVRVDASDLSGTGSSGLRSSRARS |
Ga0318534_101845511 | 3300031544 | Soil | GQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318534_108411642 | 3300031544 | Soil | RRVRLRVPAGIGRMNMLHLNVAADGTVEMLEEEAESFLRAGWVRVDDPLS |
Ga0318541_102268353 | 3300031545 | Soil | VPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGWVRVDYQ |
Ga0318538_105110433 | 3300031546 | Soil | CVPPGVGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318571_104500282 | 3300031549 | Soil | GQQAQRERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRAGWERVDAGDLAGTRGSGSQ |
Ga0318528_101078953 | 3300031561 | Soil | VRLRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED |
Ga0318528_101701911 | 3300031561 | Soil | QADRERRVRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL |
Ga0318528_101938624 | 3300031561 | Soil | VRLRVPPGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWVKVDSTA |
Ga0318528_102237832 | 3300031561 | Soil | ERRRRVRLRVPPGIGHRNMLLLNVAADGTVEMSESEAESFLRAGWVKVDADDRRG |
Ga0318515_107567012 | 3300031572 | Soil | QRRVRLRVPPGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWVKVDSTA |
Ga0318572_107719692 | 3300031681 | Soil | EELRELQARRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0307474_107649641 | 3300031718 | Hardwood Forest Soil | RRQQDRREQRVRLRVPPGIGRMNLLHLNAAADGTVEMPESEVESFLRAGWEKVDAGEPPG |
Ga0318493_107377681 | 3300031723 | Soil | YRMRAEELRELQARRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318500_106072222 | 3300031724 | Soil | GEAARQRRVSLRAPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWVKVDTHELQG |
Ga0318501_101573301 | 3300031736 | Soil | QDRREQRVRLRVPAGIGRMNMLHLNVGPDGTVEMPVREAESFLRAGWEKVDAGEPPG |
Ga0318501_106762212 | 3300031736 | Soil | GQQADRERRVRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL |
Ga0306918_111149802 | 3300031744 | Soil | IGRVNMLHLNVAADGTVEMPEEEAESFLRAGWVRVGDDAE |
Ga0318502_104407431 | 3300031747 | Soil | PGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWVKVDSTA |
Ga0318502_108752072 | 3300031747 | Soil | RRVSLRAPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWVKVDTHELQG |
Ga0318502_109724542 | 3300031747 | Soil | SRVRLCVPPGIGHRNLLLLNVAADGTVEMLASEAEACLRAGWLRVD |
Ga0318535_101364574 | 3300031764 | Soil | ARRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318521_101724774 | 3300031770 | Soil | PQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED |
Ga0318546_102712154 | 3300031771 | Soil | ERQRRVRLRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED |
Ga0318543_103305291 | 3300031777 | Soil | VRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318547_110437441 | 3300031781 | Soil | VRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL |
Ga0318552_107064121 | 3300031782 | Soil | EAERQRRVRLRVPQGIGHSNMLLLNVAADGTVEMPEEDAESFLRARWVKVDPGDLLG |
Ga0318529_101617321 | 3300031792 | Soil | RRRVRLRVPPGIGHRNMLLLNVAADGTVEMSESEAESFLRAGWVKVDADDRRG |
Ga0318503_102199971 | 3300031794 | Soil | AGIGRMNMLHLNVAADGTVEMLESEAESFLRAGWVRVDTDNKAQ |
Ga0310917_102741261 | 3300031833 | Soil | LRVPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGWVRVDYQ |
Ga0318517_101481472 | 3300031835 | Soil | DRQRAGEARGQQAQRERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRAGWERVDAGDLAGTRGSGSQ |
Ga0306919_100485351 | 3300031879 | Soil | LRRGEAARRRRVRLRVPQGIGHMNMLLLNVAADGTCEMTEEDAESFLRAGWVRVDAGDPT |
Ga0306919_107673101 | 3300031879 | Soil | VRLRVPPGIGRRVNMLHLNVAADGTVEMPEEEAQSFLRAGWERVGVGDAPS |
Ga0306925_116251331 | 3300031890 | Soil | LRVPQAIGHRNMLLLNLAADGTVEMSEAEAESFLRAGWVRVDVGD |
Ga0318551_103114252 | 3300031896 | Soil | VRLRVPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGWVRVDYQ |
Ga0318520_106728011 | 3300031897 | Soil | RQRRVRLRVPPGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWVKVDSTA |
Ga0306923_101634072 | 3300031910 | Soil | VLGSRFQHERQRRVRLRVPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWVKVDAGDGRGLE |
Ga0306923_102169623 | 3300031910 | Soil | VLGSRFQHERRRRVRLRVAQGIGDRNMLLLNVAADGTCEMTEEDAESFLRAGWVRVDTGHLQG |
Ga0306923_105741021 | 3300031910 | Soil | YRQRAKELRRGEAERQRRVRLRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED |
Ga0306923_113449791 | 3300031910 | Soil | YRQRAEELRRGEAERQRRVRLHVPQGIGRMNLLQLNVAADGTAEMLEEEAESFLRAGWVKVDAGDGRG |
Ga0306923_113677393 | 3300031910 | Soil | ERQRRVRLRVPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWIRVDAGDGRG |
Ga0306921_110674311 | 3300031912 | Soil | AARRRRVRLRVPQGIGHMNMLLLNVAADGTCEMTEEDAESFLRAGWERVDAGDGRG |
Ga0306921_112327542 | 3300031912 | Soil | VRLRVPSGIGRMNMLHLGVAADGTVEMPEDEAESFLR |
Ga0310912_104115461 | 3300031941 | Soil | VRLRVPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGW |
Ga0310916_101036791 | 3300031942 | Soil | HGQQADRERRVRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL |
Ga0310916_102683091 | 3300031942 | Soil | ELCRGETERRRRVRLRVPPGIGHRNMLLLNVAADGTVEMSESEAESFLRAGWVKVDADDRRG |
Ga0310910_111426271 | 3300031946 | Soil | RQRRVRLRVPQGIGRMNLLHLNVASDGTVEMPESEAQSFLRAGWEWADA |
Ga0310909_100164331 | 3300031947 | Soil | RLRVPQGIGRMNLLHLNVASDGTVEMPESEAQSFLRAGWEWADA |
Ga0310909_102399395 | 3300031947 | Soil | RRVRLRVPAGIGQRNMLLLDVAADGTVEMPEAEAESFLRAGWVKVDTGELQG |
Ga0306922_115640051 | 3300032001 | Soil | SPGIGHANLRHLNVAADGTVEMPESEAESFLRAGWVRVDLGEKSVF |
Ga0310911_108161542 | 3300032035 | Soil | ELRRGEAERQRRVRLRVPQGIGHRNMLLLSVAADGTVEMPEAEAESFLRAGWVRVDAGDGRG |
Ga0318549_100307344 | 3300032041 | Soil | PQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318545_100373355 | 3300032042 | Soil | ELYRMRAEELRELQARRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318556_101537481 | 3300032043 | Soil | HQARRERRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318558_102303311 | 3300032044 | Soil | EEARRQQARREHRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318532_102328701 | 3300032051 | Soil | EEARGQQAWGERWVRLCVPPGIGRMNLLHLNVAADGTVEMLESEAQSFLRAGWERVHADGLAGTESSDLT |
Ga0318575_102799793 | 3300032055 | Soil | RVPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGWVRVDYQ |
Ga0318575_104655652 | 3300032055 | Soil | LRVPQGIGQHNMLLLNVAADGTVEMPEAEAESFLRAGWVRVDAGDERG |
Ga0318533_100031621 | 3300032059 | Soil | RVRLRVPPGIGHRNMLLLNVAADGTVEMSESEAESFLRAGWVKVDADDRRG |
Ga0318533_101412815 | 3300032059 | Soil | RAEELCRGKAERQRRVRLRVPAGIGQRNMLLLDVAADGTVEMPEAEAESFLRAGWVKVDTGELQG |
Ga0318504_103469402 | 3300032063 | Soil | VRLRVPSGIGRMNMLHLNVAADGTVEMPEEEAQSFLRAGWERVDAGDAPAQQSG |
Ga0318510_100512014 | 3300032064 | Soil | RMRAEELRELQARRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318510_102831801 | 3300032064 | Soil | RRVRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL |
Ga0318513_102310901 | 3300032065 | Soil | AGEARGQQAQRERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRAGWERVDAGDLAGTRGSGSQ |
Ga0318514_102258472 | 3300032066 | Soil | LQQVERQRRVRLRVPQGIGRMNLLHLNVASDGTVEMPESEAQSFLRAGWEWADA |
Ga0318524_105048992 | 3300032067 | Soil | RRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL |
Ga0318524_105880501 | 3300032067 | Soil | RERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRVGWERVDAGDLAGTRGSGS |
Ga0306924_101267934 | 3300032076 | Soil | VRLRVPQGIGHRNMLLLNVAADGTVEMPESEAESFLRAGWVRVDAGDPTG |
Ga0318518_101045374 | 3300032090 | Soil | VRRRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED |
Ga0306920_1004236802 | 3300032261 | Soil | AEEARRQQAAGERRVRLRVPQGIGRMNMLHLNVAADGTVEMLESEAESLLRAGWVRVDAGKPQT |
Ga0306920_1017187853 | 3300032261 | Soil | RQRRVRLRVPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWIRVDAGDGRG |
Ga0306920_1020402652 | 3300032261 | Soil | LRVPPGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWIRVDGTS |
Ga0306920_1024378091 | 3300032261 | Soil | VRLRVPQGIGHRNLLLLNVAAGGTCETLESEAESFLQAGWEQVGT |
Ga0306920_1029953332 | 3300032261 | Soil | FCPVLGSRFQHERQRRVRLRVPQGIGHRNMLLLNVAADGTCDMTEEDAESFLRVGWIRVDGTS |
Ga0306920_1043853182 | 3300032261 | Soil | RLRLRVRPGIGHMNRRHLNVATCGTVEMPESEAESLLRAGWV |
Ga0310914_107709713 | 3300033289 | Soil | GEAERQRRVRLRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED |
Ga0310914_109115872 | 3300033289 | Soil | QRAEEVRRGEAERQRRVRLRVPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWVKADAGDGQG |
Ga0310914_118091321 | 3300033289 | Soil | GSRPAANAGRLRVPQGIGRMNMLHLNVAADGTCEMSEEDAESFLRAGWDRADLGDQRG |
Ga0318519_100174861 | 3300033290 | Soil | RVRLRVPQGIGRMNLLHLNVASDGTVEMPESEAQSFLRAGWEWADA |
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