Metagenome / Metatranscriptome Family F079375

Overview

Basic Information

• Family ID: F079375
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 116
• Average Sequence Length: 48 residues
• Representative Sequence: MAETQKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTR
• Number of Associated Samples: 108
• Number of Associated Scaffolds: 116

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 94.83 %
• % of genes near scaffold ends (potentially truncated): 98.28 %
• % of genes from short scaffolds (< 2000 bps): 91.38 %
• Associated GOLD sequencing projects: 105
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (78.448 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.483 % of family members)
• Environment Ontology (ENVO): Unclassified (33.621 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (37.931 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 17.57%
  β-sheet: 0.00%
  Coil/Unstructured: 82.43%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF03446	NAD_binding_2	16.38
PF09084	NMT1	12.93
PF02195	ParBc	10.34
PF14833	NAD_binding_11	5.17
PF00355	Rieske	3.45
PF01541	GIY-YIG	0.86
PF07992	Pyr_redox_2	0.86
PF04909	Amidohydro_2	0.86
PF13379	NMT1_2	0.86
PF00872	Transposase_mut	0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	12.93
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	12.93
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.86

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.45 %
Unclassified	root	N/A	21.55 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.45 %
Unclassified	root	N/A	21.55 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.45 %
Unclassified	root	N/A	21.55 %

Level 4

Name	Rank	Taxonomy	Distribution
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.90 %
Unclassified	root	N/A	21.55 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6.03 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	16.38 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.86 %
Unclassified	root	N/A	21.55 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	16.38 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.86 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.86 %
Unclassified	root	N/A	21.55 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	5.17 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5.17 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.86 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.86 %
Unclassified	root	N/A	21.55 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.86 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	16.38 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5.17 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	16.38 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.86 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.86 %
Unclassified	root	N/A	21.55 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5.17 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	16.38 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.86 %
Unclassified	root	N/A	21.55 %
unclassified Sphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium	0.86 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5.17 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	16.38 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.86 %
Sphingobium sp. 15-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. 15-1	0.86 %
Unclassified	root	N/A	21.55 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000574|JGI1357J11328_10112490	All Organisms → cellular organisms → Bacteria	827
3300000655|AF_2010_repII_A100DRAFT_1034887	All Organisms → cellular organisms → Bacteria	920
3300001372|YBBDRAFT_1258912	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	523
3300002149|C687J26657_10130585	All Organisms → cellular organisms → Bacteria	516
3300002485|C687J35088_10144336	All Organisms → cellular organisms → Bacteria	704
3300003324|soilH2_10169325	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2201
3300003349|JGI26129J50193_1015355	All Organisms → cellular organisms → Bacteria	563
3300004061|Ga0055487_10011953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1084
3300004779|Ga0062380_10342988	All Organisms → cellular organisms → Bacteria	639
3300005093|Ga0062594_103296714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	507

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.72%
Host-Associated	Host-Associated	23.28%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	16.38%
Plants	Host-Associated → Plants	23.28%
Terrestrial	Environmental → Terrestrial	60.34%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	1.72%
Freshwater	Environmental → Aquatic → Freshwater	5.17%
Marine	Environmental → Aquatic → Marine	4.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.97%
Roots	Host-Associated → Plants → Roots	0.86%
Sediment	Environmental → Aquatic → Sediment	6.03%
Soil	Environmental → Terrestrial → Soil	58.62%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.86%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.59%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.86%
Loam	Environmental → Terrestrial → Soil → Loam	9.48%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.86%
Sand	Environmental → Terrestrial → Soil → Sand	2.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.72%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.90%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.59%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.17%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.86%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.62%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.03%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.72%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.86%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.86%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.86%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.59%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.31%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.86%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.45%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.72%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.48%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.86%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.45%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.72%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.90%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.72%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental
3300001372	YB-Back-sed	Environmental
3300002149	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2	Environmental
3300002485	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1	Environmental
3300003324	Sugarcane bulk soil Sample H2	Environmental
3300003349	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM	Host-Associated
3300004061	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2	Environmental
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1357J11328_101124902	3300000574	Groundwater	MAEAQYLVGTVRPTNRPESGQELDLDTLIPAKIKF
AF_2010_repII_A100DRAFT_10348871	3300000655	Forest Soil	MPETQKEYVVGTVRPTNRPESGQEIDLDEKIPAKIKFLT
YBBDRAFT_12589121	3300001372	Marine Estuarine	MAESEKEYLVGTVRPTDRPEAGQELDLDTLIPAKIKFLSSTMNFTQGTPE
C687J26657_101305851	3300002149	Soil	MAEAQKEYLVGTVRPTNRPEAGQELDLEALIPAKIKFVS
C687J35088_101443362	3300002485	Soil	MAEAQKEYLVGTVRPTNRPEAGQELDLEALIPAKIKFVSLTMNFT
soilH2_101693252	3300003324	Sugarcane Root And Bulk Soil	MAQKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTRGTEEEFSTSXXXRKSRN*
JGI26129J50193_10153552	3300003349	Arabidopsis Thaliana Rhizosphere	MAEIGKEYLVGTVRPTNRPEAGRELDLDTLIPAKIKFVYLTMNFTRGTEEEFSTSMPG
Ga0055487_100119531	3300004061	Natural And Restored Wetlands	MADSEKEYLVGTVRPTDRPEAGQELDLDTLIPAKIKFLSSTMNFTKGTPEEFS
Ga0062380_103429881	3300004779	Wetland Sediment	MADSEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTQGTP
Ga0062594_1032967141	3300005093	Soil	MAETEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTQGTEEEFSTS
Ga0066678_104689072	3300005181	Soil	MAETQKEYLVGTVRPTNRPEAGHELDLDSLIPAKIKFVYLTMNFTRGTEEEFSTSM
Ga0068996_100384342	3300005218	Natural And Restored Wetlands	MADTQYLVGTVRPTNRPEAGQELDLEALIPAKIKFVSLTMNFTRGT
Ga0065705_112070472	3300005294	Switchgrass Rhizosphere	MSETEKEYIVGTVRPTNRPESGQEIDLDEKIPAKIKLITCTMNFTR
Ga0065707_111092991	3300005295	Switchgrass Rhizosphere	MEDMNMAETEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIK
Ga0070660_1018358722	3300005339	Corn Rhizosphere	MAEAEKEFVVGTVRPTNRPEAGQELDLDTLIPAKIKFLYSTM
Ga0070689_1005938201	3300005340	Switchgrass Rhizosphere	MAETEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLYS
Ga0070671_1000356871	3300005355	Switchgrass Rhizosphere	MAEAEKEYLVGTVRPTNRPETGQELDLDTLIPAKIKFLYSTMNFTRGTEDEFSTSMPGY
Ga0008090_154185391	3300005363	Tropical Rainforest Soil	MTEAQKEYIVGTVRPTNRPESGEELDLETKIPAKIQFLTRTMNFTRGTEEE
Ga0070673_1019415932	3300005364	Switchgrass Rhizosphere	MEDMNMAETEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFL
Ga0070700_1007761571	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPETEKEYLVGTVRPTNRPEAGQEIDLDERIPATIRFVTLTMNFTRGTEDEFRTSMTGYEAKSAELAKMG
Ga0070662_1000780781	3300005457	Corn Rhizosphere	MAEAEKEFVVGTVRPTNRPEAGQELDLDTLIPAKIKFLYSTMNFTRGT
Ga0070662_1019575372	3300005457	Corn Rhizosphere	MPETEKEYLVGTVRPTNRPEAGQEIDLDERIPATIRFVTLTMNFTRGTEDEFR
Ga0070697_1001035603	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAETQREYIVGTVRPTNRPESGQEIDLEEKIPAQIKFLTRTMNFTRGTEEEFS
Ga0070695_1016741992	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MADNEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTRGTEEEFSTSM
Ga0070696_1016241492	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LKYLQRRKIMAEDQKEYLVGTVRPTNRPEAGQELDLDTLIPAKIK
Ga0066905_1017897842	3300005713	Tropical Forest Soil	MAEKQKEYFVGTVRPTNRPEAGHELDLDTLIPEKIKFVTLTMNFTRGTEEEFITSM
Ga0068866_107852372	3300005718	Miscanthus Rhizosphere	MAEAEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLYSTMNFTRGTEDEFSTSM
Ga0066903_1079752962	3300005764	Tropical Forest Soil	MAETLKEYIVGTVRPTNRPESGQELDLETKIPEKIQFL
Ga0074470_114324561	3300005836	Sediment (Intertidal)	MADNEKEYLVGTVRPTDRPEAGQELDLDTLIPANI
Ga0068871_1015005541	3300006358	Miscanthus Rhizosphere	MAEAEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKF
Ga0075428_1000660024	3300006844	Populus Rhizosphere	MPETEKEYIVGTVRPTNRPESGQEIDLDEKIPAKIKLITRTMNFTRGTEEE
Ga0075431_1009890272	3300006847	Populus Rhizosphere	MPDTEKEYIVGTVRPTNRPESGQEIDLDEKIPAKIKLIT
Ga0075431_1014659551	3300006847	Populus Rhizosphere	MAETQKEYLVGTVRPTNRPEAGQELDLDSLIPAKIKFVYLTMNFTRG
Ga0075425_1013240962	3300006854	Populus Rhizosphere	MTETQKEYIVGTVRPTNRPEAGQEIDLEEKIPVKIKFLT
Ga0073934_102495802	3300006865	Hot Spring Sediment	MAENQKEYLVGTVRPTNRPEAGQELDPDTLIPAKIKF
Ga0075436_1001515651	3300006914	Populus Rhizosphere	MAEAQKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNF
Ga0102851_107908962	3300009091	Freshwater Wetlands	MAEAQKEYLVGTVRPTNRPEAGQELDLEALIPAKIKFVSLTMNFTR
Ga0075418_114568901	3300009100	Populus Rhizosphere	MAESEKEYLVGTVRPTNRPEAGQEVDLDTLIPAKIKFLASTMNFTRGTEEEFSTSMPG
Ga0114129_101359011	3300009147	Populus Rhizosphere	MAETQKEYLVGTVRPTNRPEAGQELDLDSLIPAKIKFVYLTMNFTRGTEEEFSTSM
Ga0105094_109027151	3300009153	Freshwater Sediment	MADNEREYLVGTVRPTDRPEAGQELDLDTLIPAKIK
Ga0105076_10080713	3300009816	Groundwater Sand	MPETQKEYIVGTVRPTNRPESGQEIDLDEKIPAKIKLITRT
Ga0126380_120117012	3300010043	Tropical Forest Soil	MGEKEYLVGTVRPTNRPEAGQELDLDALIPERIKFVSLTMNFTRGTEEEF
Ga0126384_118230861	3300010046	Tropical Forest Soil	MTEAQKEYIVGTVRPTNRPEAGQELDLETKIPEKIQFLTRTMNFTRGTEEEF
Ga0126383_121779682	3300010398	Tropical Forest Soil	MTEAQKQYIVGTVRPTNRPESGQELDLETKIPAKIHFLTR
Ga0134121_130977081	3300010401	Terrestrial Soil	MAEAEKEFVVGTVRPTNRPEAGQELDLDTLIPAKIKFLYSTMNFTRGTEDEFSTSMP
Ga0137451_10724451	3300011438	Soil	LEEFNMAADEKEYVVGTVRPTDRPEAGQELDLDTLIPAKIKFLSSTMNFTRGTEEEFSTS
Ga0137382_111840541	3300012200	Vadose Zone Soil	MPETQKEYIVGTVRPTNRPESGQEIDLDEKIPAKIKLITRTMNFTRGTE
Ga0137381_106187251	3300012207	Vadose Zone Soil	MAETQKEYLVGTVRPTNRPEAGQELDLDSLIPAKIKFV
Ga0137386_108973342	3300012351	Vadose Zone Soil	MSETEKEYIVGTVRPTNRPESGQEIDLDDKIPAKIKRLTRTMNFTRGT
Ga0137373_109911652	3300012532	Vadose Zone Soil	MSETEKEYIVGTVRPTNRPESGQEIDLDEKIPAKIKLITRTMNFTR
Ga0157300_10501141	3300012884	Soil	MLENAKNYLVGTVRPTNRPEAGQEIDLDERIPAKIRFVTLTMNFTRGTEEEFRTSMPGY
Ga0157284_102814241	3300012893	Soil	MAEAEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLYSTMNFTRGTE
Ga0157293_100388091	3300012898	Soil	MAEAEKEYLVGTVRPTNRPETGQELDLDTLIPAKIKFL
Ga0137394_103144613	3300012922	Vadose Zone Soil	LEYLQRRKIMAEAQKEYFVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTRGTEEEFS
Ga0137404_104856362	3300012929	Vadose Zone Soil	LLVQRRKIMAESQKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFT
Ga0164303_100468883	3300012957	Soil	MAETKREYIVGTVRPTNRPESGQEIDLEEKIPAQIKFLTRTMNFTRGTEEEFSTSMP
Ga0164299_115345681	3300012958	Soil	MAETKREYIVGTVRPTNRPESGQEIDLEEKIPAQIKFLTRTMNFTRGTE
Ga0157375_133736801	3300013308	Miscanthus Rhizosphere	MAEAEKEYLVGTVRPTNRPETGQELDLDTLIPAKIKFLYSTMNF
Ga0075325_10093131	3300014270	Natural And Restored Wetlands	MAETQKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLYSTMNFTRGTEEE
Ga0075327_11645701	3300014272	Natural And Restored Wetlands	MAETQKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLTSTMNFTQGTEEEFSK
Ga0075322_10137594	3300014311	Natural And Restored Wetlands	MGGKLMAEIEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFVYLTMNFTRGTEEEFST
Ga0157377_107657101	3300014745	Miscanthus Rhizosphere	MAEAEKEFVVGTVRPTNRPEAGQELDLDTLIPAKIKFLYSTMNFTRGTEDEFSTSM
Ga0180066_10533052	3300014873	Soil	MADTPKEYLVGTVRPTNRPEAGQELDLEALIPAKIKFVSLTMNF
Ga0180086_10589102	3300014883	Soil	MAEEKEYLVGTVRPTNRPEAGQELDLDTLIPEKIQFVTLTMNFTRG
Ga0137403_101492974	3300015264	Vadose Zone Soil	MPETQKEYIVGTVRPTNRPESGQEIDLDEKIPAKIKLITRTMNFTRGTEEEFGASMRGYEAKAAELAK
Ga0132258_136387681	3300015371	Arabidopsis Rhizosphere	MAETEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKF
Ga0182032_106636181	3300016357	Soil	MAETQKEYLVGTVRPTNRPEAGQELDFDTLIPAKIKFLSSTMNFTRGTEEEFSTS
Ga0187776_101717382	3300017966	Tropical Peatland	MADSEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLYS
Ga0184612_100134755	3300018078	Groundwater Sediment	MPETQKEYIVGTVRPTNRPESGQEIDLDEKIPAKIKLITRTMNFT
Ga0184627_104351152	3300018079	Groundwater Sediment	MAETDKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTRGTEE
Ga0184629_100067345	3300018084	Groundwater Sediment	MADTQKDYLVGTVRPTNRPEAGQELDLEALIPAKIKFVSLTMNFTRG
Ga0187774_113695351	3300018089	Tropical Peatland	MPENQKDHIVGTGRPTNRPESGQEIDLDERIPAKIKFLTRTMNFTKGTEEE
Ga0190265_128008801	3300018422	Soil	MPETEKEYLVGTVRPTNRPEAGQEIDLDERIPAKIRFL
Ga0190270_121532311	3300018469	Soil	MAAEEKEYVVGTVRPTDRPEAGQELDLDTLIPAKIKFL
Ga0190273_119949962	3300018920	Soil	MAADEKEYDEIEYIVGTVRPTDRPEAGQELDLDTLIPAKI
Ga0193707_10648822	3300019881	Soil	MAESQKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLR
Ga0193739_11006141	3300020003	Soil	MAETDKEYLVGTVRPTNRPEAGQELDLDTLVPAKIKFLSSTMN
Ga0210379_103285122	3300021081	Groundwater Sediment	MAADEKEYDEIEYIVGTVRPTDRPEAGQELDLDTLIPAKIKFLYSTMNFTRGTEEEFSTSMPGY
Ga0126371_126157812	3300021560	Tropical Forest Soil	MAETQKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTR
Ga0209619_102165942	3300025159	Soil	MADTQKEYLVGVVHPTNRPEAGQELNLDTLIPAKIKFVSLTMNFTRGTE
Ga0209342_110207761	3300025326	Soil	MAEAQKEYLVGTVRPTNRPEAGQVLDLEALIPAKIKFVSLTMNFTRGTEEE
Ga0210098_10271373	3300025550	Natural And Restored Wetlands	MAESDKEYLVGTVRPTDRPEAGQELDLDTLIPAKIKFLSSTM
Ga0207688_104348341	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MAETEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTRGTEEE
Ga0207684_108733332	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAQNQEEYIVGTVRPTNRPEAGQELDLETKIPAKIRFLTRTMNFT
Ga0207706_101613031	3300025933	Corn Rhizosphere	MAEAEKEFVVGTVRPTNRPEAGQELDLDTLIPAKIKFLYST
Ga0207706_113123152	3300025933	Corn Rhizosphere	MAEAEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLYST
Ga0207691_114992062	3300025940	Miscanthus Rhizosphere	MPETEKEYLVGTVRPTNRPEAGQEIDLDERIPATIRFVTLTMNFTRGTEDE
Ga0210116_11069202	3300025959	Natural And Restored Wetlands	MADSEKEYLVGTVRPTDRPEAGQELDLDTLIPAKIKFLSS
Ga0207651_115176942	3300025960	Switchgrass Rhizosphere	MAEAEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLYSTMNFTRGTED
Ga0207651_115620401	3300025960	Switchgrass Rhizosphere	MAETEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFL
Ga0208421_10102151	3300026058	Natural And Restored Wetlands	MAEIEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFVYLTMNFTRGTEEEFSTS
Ga0209879_10261872	3300027056	Groundwater Sand	MAETQKEYIVGTVRPTNRPESGQEIDLDEKIPAKIKLITRTMNFTRGTEEEFG
Ga0209818_11283522	3300027637	Agricultural Soil	MAENGKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLYSTMNFTRGNEEEFS
Ga0209798_102236012	3300027843	Wetland Sediment	MAENEKEYLVGTVRPTDRPEAGQELDLDTLIPAKIKFLSSTMNFTKGTPEEFST
Ga0209486_104439492	3300027886	Agricultural Soil	MAENGKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLYSTMNFTRGTEEEFST
Ga0209486_104755901	3300027886	Agricultural Soil	MPETEKGYLVGTVRPTNRPEAGQEIDLDDRIPAKI
Ga0209486_109574881	3300027886	Agricultural Soil	MPETEKEYLVGTVRPTNRPEAGQEIDLDDRIPAKI
Ga0209382_109796561	3300027909	Populus Rhizosphere	MAQTEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTRGTEEE
Ga0209857_10918301	3300027957	Groundwater Sand	MAETQKEYIVGTVRPTNRPESGQEIDLDEKIPAKI
Ga0137415_110091041	3300028536	Vadose Zone Soil	MPETQKEYIVGTVRPTNRPESGQEIDLDEKIPAKIKLITRTMNFTRGTEEEFGASMRGYEAKAA
Ga0307405_101431831	3300031731	Rhizosphere	MLETEKEYLVGTVRPTNRPEAGQEIDLDERIPAKIRFVTLTMNFTRGTEEEFRTSITDYEAKSAELAKIGA
Ga0306918_108833752	3300031744	Soil	MAETEREYIVGTVRPTNRPESGQEIDLEEKIPAQIKFLT
Ga0307475_107544862	3300031754	Hardwood Forest Soil	MAQNQKEYIVGTVRPTNRPEAGQELDLETKIPAKIQFLTRTMNF
Ga0307473_115734092	3300031820	Hardwood Forest Soil	MAETLKQYIVGTVRPTNRPEAGQELDLETKIPAKIQFLTRTMNFTRG
Ga0307413_108520812	3300031824	Rhizosphere	MADSEKEYLVGTVRPTNRPEAGQELDLDTLIPAKINFLYSTMNFTQGTAEEFSTS
Ga0310900_119548671	3300031908	Soil	MAETEKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFTRGTEEEFST
Ga0326597_108227863	3300031965	Soil	MPDAQGEYLVGTVRPTNRPEAGQELDLDTLIPAKIRFVSLTMNFTRGTEEEFG
Ga0307471_1002990183	3300032180	Hardwood Forest Soil	MTETLKEYIVGTVRPTNRPEAGQELDLETKIPEKIQFLTRTMNFTRGTEEEFS
Ga0307471_1016131812	3300032180	Hardwood Forest Soil	MAETKREYIVGTVRPTNRPESGQEIDLEEKIPAQIKFLTRTMNFTR
Ga0307471_1016928472	3300032180	Hardwood Forest Soil	MAQNQEEYIVGTVRPTNRPEAGQELDLETKIPAKIQFLTRTMNFTRGTEEEFSTSMP
Ga0310914_106220942	3300033289	Soil	MAETQKEYLVGTVRPTNRPEAGQELDLDTLIPAKIKFLSSTMNFT
Ga0316604_106470811	3300033406	Soil	MADNEKEYLVGTVRPTDRPEAGQELDLDTLIPAKIKFLYS
Ga0214472_101522171	3300033407	Soil	MAEKEYLVGTVRPTNRPEAGQELDLDTLIPEKIKFVALTMNFTSGTAEE
Ga0316628_1029910682	3300033513	Soil	MADTQKEYLVGTVRPTNRPEAGQELDLDTVIPAKIKF
Ga0364945_0163716_505_669	3300034115	Sediment	LEEFNMAADEKEYVVGTVRPTDRPEAGQELDLDTLIPAKIKFLSSTMNFTRGTEE
Ga0364927_0224524_2_124	3300034148	Sediment	LEEFNMAADEKEYVVGTVRPTDRPEAGQELDLDTLIPAKIK