NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F079369

Metagenome Family F079369

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079369
Family Type Metagenome
Number of Sequences 116
Average Sequence Length 60 residues
Representative Sequence MPRKDRPTDPAEIQRSIEEAIQDLVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH
Number of Associated Samples 86
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 75.86 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 83.62 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (81.034 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(50.862 % of family members)
Environment Ontology (ENVO) Unclassified
(49.138 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(55.172 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 22.99%    β-sheet: 20.69%    Coil/Unstructured: 56.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF00580UvrD-helicase 7.76
PF14520HHH_5 6.03
PF01864CarS-like 6.03
PF07883Cupin_2 2.59
PF01266DAO 2.59
PF13245AAA_19 1.72
PF04293SpoVR 1.72
PF08282Hydrolase_3 0.86
PF00476DNA_pol_A 0.86
PF12850Metallophos_2 0.86
PF00082Peptidase_S8 0.86
PF00239Resolvase 0.86
PF13391HNH_2 0.86
PF02537CRCB 0.86
PF13361UvrD_C 0.86
PF00589Phage_integrase 0.86
PF11154DUF2934 0.86
PF13489Methyltransf_23 0.86
PF04392ABC_sub_bind 0.86
PF13458Peripla_BP_6 0.86
PF00501AMP-binding 0.86
PF13191AAA_16 0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 116 Family Scaffolds
COG0210Superfamily I DNA or RNA helicaseReplication, recombination and repair [L] 7.76
COG10743’-5’ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)Replication, recombination and repair [L] 7.76
COG3973DNA helicase IVReplication, recombination and repair [L] 7.76
COG0575CDP-diglyceride synthetaseLipid transport and metabolism [I] 6.03
COG2719Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation (function unknown)Cell cycle control, cell division, chromosome partitioning [D] 1.72
COG0239Fluoride ion exporter CrcB/FEX, affects chromosome condensationCell cycle control, cell division, chromosome partitioning [D] 0.86
COG0560Phosphoserine phosphataseAmino acid transport and metabolism [E] 0.86
COG0561Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatasesCoenzyme transport and metabolism [H] 0.86
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 0.86
COG1877Trehalose-6-phosphate phosphataseCarbohydrate transport and metabolism [G] 0.86
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.86
COG2217Cation-transporting P-type ATPaseInorganic ion transport and metabolism [P] 0.86
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.86
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.86
COG3769Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamilyCarbohydrate transport and metabolism [G] 0.86

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms81.03 %
UnclassifiedrootN/A18.97 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2209111022|2221208829All Organisms → cellular organisms → Bacteria → Proteobacteria1808Open in IMG/M
3300000956|JGI10216J12902_110985411All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales812Open in IMG/M
3300001402|JGI20195J14853_1041207All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales623Open in IMG/M
3300001593|JGI12635J15846_10685100Not Available591Open in IMG/M
3300001661|JGI12053J15887_10111851All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1468Open in IMG/M
3300001661|JGI12053J15887_10236216All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069914Open in IMG/M
3300001661|JGI12053J15887_10242177All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069900Open in IMG/M
3300001661|JGI12053J15887_10482429Not Available592Open in IMG/M
3300002245|JGIcombinedJ26739_100737273All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069864Open in IMG/M
3300002245|JGIcombinedJ26739_101707572All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300002886|JGI25612J43240_1020299All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.982Open in IMG/M
3300005436|Ga0070713_101553857All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria642Open in IMG/M
3300005561|Ga0066699_10375067All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00691017Open in IMG/M
3300006055|Ga0097691_1001108All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales20748Open in IMG/M
3300006055|Ga0097691_1002960All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium10807Open in IMG/M
3300006642|Ga0075521_10377561All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium688Open in IMG/M
3300006864|Ga0066797_1286974All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069574Open in IMG/M
3300007255|Ga0099791_10548440All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069563Open in IMG/M
3300007258|Ga0099793_10285732All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300007258|Ga0099793_10564844All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069568Open in IMG/M
3300007788|Ga0099795_10636651Not Available509Open in IMG/M
3300009029|Ga0066793_10681126Not Available584Open in IMG/M
3300009038|Ga0099829_10183565All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1685Open in IMG/M
3300009038|Ga0099829_10249175All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1448Open in IMG/M
3300009038|Ga0099829_10284397All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00691354Open in IMG/M
3300009038|Ga0099829_10789976All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales788Open in IMG/M
3300009088|Ga0099830_10000651All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria16107Open in IMG/M
3300009088|Ga0099830_11755358All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069518Open in IMG/M
3300009089|Ga0099828_10791487All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069850Open in IMG/M
3300009174|Ga0105241_12687387Not Available501Open in IMG/M
3300010159|Ga0099796_10326801All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium656Open in IMG/M
3300011269|Ga0137392_10010930All Organisms → cellular organisms → Bacteria → Proteobacteria6024Open in IMG/M
3300011270|Ga0137391_10285140Not Available1426Open in IMG/M
3300011271|Ga0137393_10009331All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria6685Open in IMG/M
3300011271|Ga0137393_11604912Not Available540Open in IMG/M
3300012096|Ga0137389_10045040All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3299Open in IMG/M
3300012189|Ga0137388_10203368All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1786Open in IMG/M
3300012189|Ga0137388_11725928All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales559Open in IMG/M
3300012200|Ga0137382_10628019All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales768Open in IMG/M
3300012200|Ga0137382_10631802All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300012200|Ga0137382_11211840All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales536Open in IMG/M
3300012202|Ga0137363_10898826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens752Open in IMG/M
3300012202|Ga0137363_10953004All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii729Open in IMG/M
3300012203|Ga0137399_10220609Not Available1546Open in IMG/M
3300012203|Ga0137399_10264732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00691413Open in IMG/M
3300012203|Ga0137399_10406747All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00691135Open in IMG/M
3300012203|Ga0137399_10639869All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium895Open in IMG/M
3300012203|Ga0137399_11064230Not Available681Open in IMG/M
3300012285|Ga0137370_10872707All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae557Open in IMG/M
3300012359|Ga0137385_10989402All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii694Open in IMG/M
3300012362|Ga0137361_10209794All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1764Open in IMG/M
3300012582|Ga0137358_10429895All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens892Open in IMG/M
3300012582|Ga0137358_10552325All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069774Open in IMG/M
3300012685|Ga0137397_10037468All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3468Open in IMG/M
3300012685|Ga0137397_10144974Not Available1758Open in IMG/M
3300012685|Ga0137397_10694652All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium756Open in IMG/M
3300012685|Ga0137397_10754787Not Available722Open in IMG/M
3300012903|Ga0157289_10125902All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium763Open in IMG/M
3300012922|Ga0137394_10950774All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium716Open in IMG/M
3300012923|Ga0137359_10478345All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1100Open in IMG/M
3300012924|Ga0137413_10202181All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1336Open in IMG/M
3300012927|Ga0137416_10796059All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.836Open in IMG/M
3300012930|Ga0137407_10301599All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00691465Open in IMG/M
3300012939|Ga0162650_100098620Not Available514Open in IMG/M
3300012944|Ga0137410_10049640All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2986Open in IMG/M
3300012958|Ga0164299_11310400All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069554Open in IMG/M
3300012960|Ga0164301_10581011Not Available823Open in IMG/M
3300012986|Ga0164304_10759101All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011744Open in IMG/M
3300012987|Ga0164307_11705882Not Available534Open in IMG/M
3300012988|Ga0164306_11981165Not Available507Open in IMG/M
3300013308|Ga0157375_13352841All Organisms → cellular organisms → Bacteria → Proteobacteria534Open in IMG/M
3300014056|Ga0120125_1139377All Organisms → cellular organisms → Bacteria → Proteobacteria586Open in IMG/M
3300015242|Ga0137412_10112966All Organisms → cellular organisms → Bacteria2204Open in IMG/M
3300015373|Ga0132257_103225391All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens594Open in IMG/M
3300018056|Ga0184623_10498631All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens520Open in IMG/M
3300018469|Ga0190270_10052580All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2843Open in IMG/M
3300018482|Ga0066669_10849725All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Ferrovales → Ferrovaceae → Ferrovum → Ferrovum myxofaciens812Open in IMG/M
3300021086|Ga0179596_10408806All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae685Open in IMG/M
3300021168|Ga0210406_10893169All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales669Open in IMG/M
3300021170|Ga0210400_10339683All Organisms → cellular organisms → Bacteria1235Open in IMG/M
3300021178|Ga0210408_10062130All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00692919Open in IMG/M
3300021413|Ga0193750_1081170Not Available603Open in IMG/M
3300021478|Ga0210402_11704181All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens557Open in IMG/M
3300022694|Ga0222623_10147477All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium916Open in IMG/M
3300025457|Ga0208850_1001138All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria7547Open in IMG/M
3300025484|Ga0208587_1013758All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2820Open in IMG/M
3300025553|Ga0208080_1094463All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae633Open in IMG/M
3300025854|Ga0209176_10065767All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069823Open in IMG/M
3300025878|Ga0209584_10433862All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069507Open in IMG/M
3300026285|Ga0209438_1015591All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2549Open in IMG/M
3300026285|Ga0209438_1038014All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1594Open in IMG/M
3300026374|Ga0257146_1088622Not Available506Open in IMG/M
3300026498|Ga0257156_1076035Not Available696Open in IMG/M
3300026555|Ga0179593_1055604All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00692884Open in IMG/M
3300026557|Ga0179587_10128180All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1564Open in IMG/M
3300026557|Ga0179587_10284741All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00691063Open in IMG/M
3300026920|Ga0208575_1020289Not Available600Open in IMG/M
3300027587|Ga0209220_1035223All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1341Open in IMG/M
3300027591|Ga0209733_1096164All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069749Open in IMG/M
3300027610|Ga0209528_1008091All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2256Open in IMG/M
3300027629|Ga0209422_1030359All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1331Open in IMG/M
3300027671|Ga0209588_1033748All Organisms → cellular organisms → Bacteria1642Open in IMG/M
3300027681|Ga0208991_1126963All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium759Open in IMG/M
3300027846|Ga0209180_10037578All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2632Open in IMG/M
3300027846|Ga0209180_10066119All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2019Open in IMG/M
3300027846|Ga0209180_10155245All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1319Open in IMG/M
3300027846|Ga0209180_10166218All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens1272Open in IMG/M
3300027862|Ga0209701_10006326All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium7735Open in IMG/M
3300027862|Ga0209701_10103364All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1778Open in IMG/M
3300027903|Ga0209488_10191583Not Available1541Open in IMG/M
3300027903|Ga0209488_10741942All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069701Open in IMG/M
3300028047|Ga0209526_10131903Not Available1754Open in IMG/M
3300028536|Ga0137415_10617719All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium895Open in IMG/M
3300028819|Ga0307296_10132715Not Available1341Open in IMG/M
3300031231|Ga0170824_122915492All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria846Open in IMG/M
3300032180|Ga0307471_102151177All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales702Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil50.86%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil11.21%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.76%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil7.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.17%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.72%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.86%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.86%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.86%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.86%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.86%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.86%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.86%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.86%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.86%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.86%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.86%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.86%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.86%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2209111022Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichmentEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001402Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002886Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cmEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300006055Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012EnvironmentalOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006864Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193EnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012903Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1EnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012939Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014056Permafrost microbial communities from Nunavut, Canada - A20_5cm_0MEnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021413Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1EnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300025457Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025484Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025553Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025854Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes)EnvironmentalOpen in IMG/M
3300025878Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)EnvironmentalOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300026498Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-AEnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300026920Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027610Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027629Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
22220451372209111022Grass SoilMARKERPTDLAEIQLAIEEAIQDLVRKGLVVDSGQRRWSQPTGRYAIVWEPTGFGKAFH
JGI10216J12902_11098541133300000956SoilMPRKDRPTDPAEIQLAIEAAIQELVRKGLVVDSGQRRWSERTGRYEIVWESKLFGKTFH*
JGI20195J14853_104120713300001402Arctic Peat SoilDGSSEAAALSTEIQRSIEEAIQEAVRKGWLYDSGQKRWSPRTGRYEIVWESTIFGKTFQ*
JGI12635J15846_1068510013300001593Forest SoilMKRKDWPTDPAEILRSIDEAIQDLVRKGLVVDSGQRRWSKRTGRYETVWESTVFGKTFH*
JGI12053J15887_1011185113300001661Forest SoilMARKDWPADPAEILRSIEEAIQDLVRKGLLIDSGRKKWSQRTGRYEIVWESKLFGK
JGI12053J15887_1023621623300001661Forest SoilMARKDRATDPTEIQRSIEEAIQDFVRKGLVVDSGQRRWSPRTGRYEIVWARPGAGETAH*
JGI12053J15887_1024217723300001661Forest SoilMRRKDWPTDPAEIQRSIEEAIQDLARKGLVVDSGQRRWSQRTGRYEIVLESKLFGKTFH*
JGI12053J15887_1048242913300001661Forest SoilMARKDRSADPAEIQLAIEATIRDFAGKGLIADSGQRRWSLRTGRYEIVWESKLFGKTFH*
JGIcombinedJ26739_10073727333300002245Forest SoilMPRKDWPTDPAEIQRSIEEAIQKLVRMGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH*
JGIcombinedJ26739_10170757213300002245Forest SoilMTIKPTEREIDMARKDRSADPAEIQLAIEAAIQDFVRKGLVADSGQRRWSQRTGRYEIVWESKLFGKTFH*
JGI25612J43240_102029913300002886Grasslands SoilMARKDRPTDPAEIQLAIEEAIQHFVRKGWIVDSGQRRWSQRNGRYEIVWESKLFGKTFH*
Ga0070713_10155385723300005436Corn, Switchgrass And Miscanthus RhizosphereMPRKDWPTDPAEIQRSIEEAIQELVTKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH*
Ga0066699_1037506723300005561SoilMRRKDWPTDPAEIRRSIDEAIQDLVRKGLVVDSGQRRWSKRTGRYETVWESTVFGKTFH*
Ga0097691_1001108123300006055Arctic Peat SoilMRRKDWPTDPAEIRRSIDEAIQDLVRKGLVVDSGQRRWSKRTGRYETVWESTVFGKTLQ*
Ga0097691_100296083300006055Arctic Peat SoilMRRKDWPTDPAEIQRSIEEAIQEAVRKGWLVDSGQKRWSPRTGRYEIVWESTIFGKMFQ*
Ga0075521_1037756123300006642Arctic Peat SoilMRRKDWPTDPTEIQRSIEEAIQEAVRKGWLVDSGQKRWSPRTGRYEIVWESTIFGKTFQ*
Ga0066797_128697413300006864SoilMRRQDWPTDPTEIQRSIEEAIQEAVRKGWLVDSGQKRWSPRTGRNEIVWESTIFGKTFQ*
Ga0099791_1054844023300007255Vadose Zone SoilMARKDRPTDPAEIQLAIEEAIQHFVRKGWIVDSGQRRWSQRNGRYEIVWESK
Ga0099793_1028573213300007258Vadose Zone SoilMRRKDWPTDPAEIRRSIDEAILVRKGLVVDSGQRRWSKRTGRYETVWESTVFGKTFH*
Ga0099793_1056484423300007258Vadose Zone SoilMPRKDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRTWSQRTGRYEIVWESKLFGKTFH*
Ga0099795_1063665123300007788Vadose Zone SoilMARQDRSADPAEIQLAIEAAIRNFVRRGLVADSGHRRWSERTGRYEIVWE
Ga0066793_1068112613300009029Prmafrost SoilMARKDRSADPAEIQLAIEAAIQELVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH*
Ga0099829_1018356523300009038Vadose Zone SoilMARKDWPKDPAEIQRSIEEAIQHFVKKGWLVDSGQRRWSQRTGRYEIVWESTVFGKTLQ*
Ga0099829_1024917523300009038Vadose Zone SoilMTRKDWPTDPAEIRRSIEEAIQELVRKGLVVDSSQRRWSQRTGRYEIVWESTVFGKTFH*
Ga0099829_1028439723300009038Vadose Zone SoilMPRKDRPTDPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH*
Ga0099829_1078997613300009038Vadose Zone SoilMPRKDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGRYEIVWEYTAAGKMFLNTEHKSN*
Ga0099830_10000651123300009088Vadose Zone SoilMARKDRPTDPAEIQLAIEEAIQHFVRKGWIVDSGHKRWSQRTGRYEIVWESKVAGKTFR*
Ga0099830_1175535813300009088Vadose Zone SoilMTIKPTEREIDMARKDRSADPAEIQLAIEAAIQDFVAKGLVADSGQRRWSQRTGRFEIVWEAKIVGKT
Ga0099828_1079148713300009089Vadose Zone SoilMPRKDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQHTGRYEIVWEYTAAGKMFLNTEHKSN*
Ga0105241_1268738713300009174Corn RhizosphereMTRKKRPTDPAEIQLVIEEAIQDLVRKGLVVDSGQGRWSQPTGRYTGFGKAFH*
Ga0099796_1032680123300010159Vadose Zone SoilMPRKDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH*
Ga0137392_1001093063300011269Vadose Zone SoilMPRKDRPTDPAEIQRSIEEAIQDLVRKGLVVDSGQRRWSQRTGRYEIAWESKLFGKTFH*
Ga0137391_1028514023300011270Vadose Zone SoilMPRKDWPTDPAEIQRSIEEAIQKLVRKGLVVDSGQRRWSQRTGRYEIVWESTVAGKTFH*
Ga0137393_1000933173300011271Vadose Zone SoilMPRKDRPTDPAEIQRSIEEAIQDLVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH*
Ga0137393_1160491213300011271Vadose Zone SoilKDRSADPAEIQLAIEAAIQDFVAKGLVADSGQRRWSQRTGRFEIVWESKIVGKTFH*
Ga0137389_1004504063300012096Vadose Zone SoilMVMARKDRPTDPAEIQLAIEEAIQHFVRKGWIVDSGHKRWSQRTGRYEIVWESKVAGKTFR*
Ga0137388_1020336843300012189Vadose Zone SoilPRKDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGRYEIVWEYTAAGKMFLNTEHKSN*
Ga0137388_1172592813300012189Vadose Zone SoilNLNMPRKDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH*
Ga0137382_1062801923300012200Vadose Zone SoilMARQDRSADPAEIQLAIEAAIQDFVGRGLVADSGQRRWSERTGRYEIVWEYTAAGKMFLNTKYKGN*
Ga0137382_1063180213300012200Vadose Zone SoilRELKTRKGNLNMSRKDWTKDPAEIQRSIEEAIQKLVRKGLVVDSGQRRWSKRTGRYETVWESTVFGKTFH*
Ga0137382_1121184013300012200Vadose Zone SoilRELKTRKGNLNMSRKDWTKDPAEIQRSIEEAIQKLVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH*
Ga0137363_1089882613300012202Vadose Zone SoilLQRAQHKERNFNMARKDWPTDPAEIQRSIEEAIQDLVRKGLLIDSGRKKWSQRTGRYEIVWDSKLFGKTFH*
Ga0137363_1095300413300012202Vadose Zone SoilRPIQGREIVMARKDRPTDPAQIQHAIEEAIQHFVRKGWIVDSGHKRWSQRTGRYEIVWES
Ga0137399_1022060913300012203Vadose Zone SoilMPRKDWPADPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGPYEIVWESKLFGKTFH*
Ga0137399_1026473213300012203Vadose Zone SoilMARQDRSADPAEIQLAIEAAIQDFVGRGLVADSGQRRWSERTGRYEIVWEYTAAGRMFLNTEYKSN*
Ga0137399_1040674723300012203Vadose Zone SoilMARKDWPADPAEILRSIEEAIQDLVRKGLLIDSGRKKWSQRTGRYEIVWESKLFGKTLH*
Ga0137399_1063986923300012203Vadose Zone SoilMARNDWPTDPAEIRRSIETAIQELVEQGLLVDSGERRWSQQTKRYEIVWVAIGAGNTGH*
Ga0137399_1106423013300012203Vadose Zone SoilMARKDRPTDPAEIQLAIEEAIQHLVRKGLVVDSGQRRWSERTGRYEIVWESKIAGEKFH*
Ga0137370_1087270723300012285Vadose Zone SoilMARKDRPTDPAEIQLAIEAAIQDFVGRGLVADSGQRRWSERTGRYEIVWKYTAAGKMFLNTEYRSD*
Ga0137385_1098940223300012359Vadose Zone SoilMARKDRPTDPAQIQLAIEEAIQHFVRKGWIVDSGQRRWSQRTGRYEIVWESKIAGKTFH*
Ga0137361_1020979423300012362Vadose Zone SoilMPRKDWPTDPAEIQRSIEEAIQKLVRKGLVVDSGQRRWSERTGRYEIVWESKLFGKTFH*
Ga0137358_1042989523300012582Vadose Zone SoilMARKDWPADPAEIQRSIEEAIQDLVRKGLLFDSGRKKWSQRTGRYEIVWESKLFGKTFR*
Ga0137358_1055232513300012582Vadose Zone SoilTRAQDDNRNYESSTQGTEIIMRRKDWPTDPTEIQRSIEEAIQEAVRKGWLVDSGQKRWSPRTGRYEIVWESTIFGNTFH*
Ga0137397_1003746833300012685Vadose Zone SoilMARKDWPADPAEIQRSIEEAIQDLVRKGLLIDSGRKKWSQRTGRYEIVWESKLFGKTLH*
Ga0137397_1014497413300012685Vadose Zone SoilMARKDRPTDPAEIQLAIEEAIQHFVRKGWLVDSGHKRWSQRTGRYEIVWESKVFGQTFH*
Ga0137397_1069465213300012685Vadose Zone SoilMPRKDWPADPAEIQRSIEEAIQELVRKGLVVGSGQRRWSQRTGRYEIVWESKLFGKTFH
Ga0137397_1075478713300012685Vadose Zone SoilDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH*
Ga0157289_1012590223300012903SoilMPRKDRPADTEIQGLIEEAIQDLVRKGLVIDSGQRRWSQRTGRYEIVWESKVFGKAFH*
Ga0137394_1095077423300012922Vadose Zone SoilMVMARKDRPTDPAEIQLAIEEAIQHFVRKGWIVDSGQRRWSQRNGRYEIVWESKLFGKTFH*
Ga0137359_1047834543300012923Vadose Zone SoilMARKDWPADPAEIQRSIEEAIQDHVRKGLLIDSGRKKWSQRTGRYEIVWEPKLFGKTLH*
Ga0137413_1020218113300012924Vadose Zone SoilNLNMPRKDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRAWSQRTGRYEIVWESKLFGKTFH*
Ga0137416_1079605913300012927Vadose Zone SoilMVMARKDRPTDPAEIQLAIEEAIQHFVRKGWIVDSGQRRWSQRNGRYEIVWESKLFGKTFQ*
Ga0137407_1030159923300012930Vadose Zone SoilMVMARKDRPTDPAEIQLAIEEAIQHFVRKGWIVDSGHKRWSQRTGRYEIVWESKVAGKTFD*
Ga0162650_10009862013300012939SoilMARKDWPADPAEIQRSIEEAIQDLVRKGLLIDSGRKKWSQRTGRYEIVWESKLFGKTFH*
Ga0137410_1004964043300012944Vadose Zone SoilMARKDWPADPAEIQRSIEEAIQDLVRKGLLIDSGRKKWSQLTGRYEIVWESKLFGKTLH*
Ga0164299_1131040023300012958SoilMPRKDMPRKDRPADAEIQRLIEEAIQDLVRKGLVVDSGQRRWSQRTGRYEIVWESTVFGKTFQ*
Ga0164301_1058101123300012960SoilMARKERPTDLAEIQLVIEEAIQDLVRKGMVVDSGQRRWSQPTGRYAIVWEPTGFGKAFH*
Ga0164304_1075910133300012986SoilRKDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRRWSERTGRYEIVWESKLFGKTSH*
Ga0164307_1170588213300012987SoilRLDREDRPTDAEIQELRLIQEAIQDLGKMGLVVDSGQRRWSQRTGRYEIVWESTVFGKTSSECEAQ*
Ga0164306_1198116513300012988SoilNMPRKDMPRKDRPADAEIQRLIEEAIQDLVRKGLVVDSGQRRWSQRTGRYEIVWESTVFGKTFQ*
Ga0157375_1335284113300013308Miscanthus RhizosphereMPRKDWPTDLAETQRSIEEAIQDLVRKGLVVDSGQRRWSNRTGRYETVWQSTVFGKTFH*
Ga0120125_113937723300014056PermafrostGREYESTTQMKEIDMARKDWPTDPAEIRRSIDKAIQDLVRKGLVVDSSQRRWSNRTGRYETVWESTVFGKTFH*
Ga0137412_1011296633300015242Vadose Zone SoilMPRKDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRAWSQRTGRYEIVWESKLFGKTFH*
Ga0132257_10322539113300015373Arabidopsis RhizosphereAEIQRSIEEAIQDLGLLIDSGRKKWSQRTGRYEIVWVSKLFGKTFH*
Ga0184623_1049863123300018056Groundwater SedimentEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH
Ga0190270_1005258023300018469SoilMPRKDWPTDPAEIQRSIEEAIQDLARKGLVVDSGQRRWSERTGRYEIVWESKLFGKTSH
Ga0066669_1084972523300018482Grasslands SoilMPRKDWPTDPAEIQRSIEEAIQKLVRKGLVVDSGQRRWSKRTGRYETVWESTVFGKTFH
Ga0179596_1040880613300021086Vadose Zone SoilKGNMVMARKDRPTDPAEIQLAIEEAIQHFVRKGWIVDSGHKRWSQRTGRYEIVWESKVAGKTFR
Ga0210406_1089316913300021168SoilMARKDRLTDPTEIQLAIEAAIQDFVRRGLVADSGQRKWSERTGRYEIVWEHTAAGKMFLNTEYKSN
Ga0210400_1033968313300021170SoilMRRKDWPTDPAEIRRSIDEAIQDLVRKGLVVDSGQRRWSKRTGRYETVWESTVFGKTFH
Ga0210408_1006213043300021178SoilMARKDRSADPAEIQFAIEKAIQDFVRKGLVADSGQRRWSERTGRYEIVWEYTAAGKMFLNTEYKGN
Ga0193750_108117013300021413SoilAEIQLAIEAAIRNFVRRGLVADSGQRRWSERTGRYEIVWEYTAAGKMFLNTEYKCN
Ga0210402_1170418123300021478SoilMARKERPTDLAEIQLAIEEAIQDLVRKGMVVDSGQRRWSQPTGRYEIVWEPTGFGKAFH
Ga0222623_1014747723300022694Groundwater SedimentMARKDWPTDPAEIQRSIEEAIQELVRKGLLADSGQRRWSERSKRYEIVWKATDAGRKLHSANSA
Ga0208850_1001138123300025457Arctic Peat SoilMRRKDWPTDPAEIRRSIDEAIQDLVRKGLVVDSGQRRWSKRTGRYETVWESTVFGKTLQ
Ga0208587_101375833300025484Arctic Peat SoilKDWPTDPAEIRRSIDEAIQDLVRKGLVVDSGQRRWSKRTGSYETVRESAVFGKTLH
Ga0208080_109446323300025553Arctic Peat SoilMRRKDWPTDPAEIRRSIDEAIQDLVRKGSVVDSGQRRWSKRTGSYETVRESAVFGKTLH
Ga0209176_1006576733300025854Arctic Peat SoilMSRKDWPTDPAEIQRSIEAAIQEAVRKGWVVDSGQKRWSPRTGRYEIAWESTILGKTFH
Ga0209584_1043386213300025878Arctic Peat SoilMRRKDWPTDPTEIQRSIEEAIPEAVRKGWLVDSGQKRWSPRTGRYEIVWESTIFGKTFQ
Ga0209438_101559123300026285Grasslands SoilMARKDWPADPAEIQRSIEEAIQDLVRKGLLIDSGRKKWSQRPGRYEIVWESKLFGKTLH
Ga0209438_103801433300026285Grasslands SoilMRRKDWPTDPAEIRRSIDEAILVRKGLVVDSGQRRWSKRTGRYETVWESTVFGKTFH
Ga0257146_108862223300026374SoilMPRNDRPTDAEIQRLIEEAVQDLVRKGLVVDSGQRRWSQRTKRYEICLRQIDQY
Ga0257156_107603523300026498SoilMARKDRSADPAEIQLAIEAAIQDFVGKGLVADSGRRRWSERTGRYEI
Ga0179593_105560413300026555Vadose Zone SoilRETQHEDGNQNMPRKDMPRKDRPADAEIQRLIEEAIQDLVRKGLVIDSGQRRWSQRTGRYEIVWESKVFGKTFH
Ga0179587_1012818023300026557Vadose Zone SoilMARKDWPADPAEIQRSIEEAIQDLVRKGLLIDSGRKKWSQRPGRYEIVWESKLFGRTLH
Ga0179587_1028474133300026557Vadose Zone SoilMARQDRSADPAEIQLAIEAAIQNFVGRGLVADSGQRRWSERTGRYEIVWEYTAAGKMFLNTEYK
Ga0208575_102028913300026920SoilMARQDRSADPAEIQLAIEAAIQDFVGRGLVADSGQRRWSERTG
Ga0209220_103522313300027587Forest SoilMKRKDWPTDPAEILRSIDEAIQDLVRKGLVVDSGQRRWSKRTGRYETVWESTVFGKTFH
Ga0209733_109616423300027591Forest SoilMRRKDWPTDPAEVQRSIEEAIQQLVRMGLVVDSGQKRWSKRTGRYETVWESTIFGETFH
Ga0209528_100809133300027610Forest SoilMRRKDWPTDPAEIRRSIDEAIQDLVRKGLVVVSGRRRWSKRTGRYETVWESTVFGKTFH
Ga0209422_103035923300027629Forest SoilMRRKDWPTDPAEIRRSIDEAIQDLVRKGLVVDSGQRRWSKRTGRYETLWESTVFGKTFH
Ga0209588_103374823300027671Vadose Zone SoilMVMARKDRPTDPAEIQLAIEEAIQHFVRKGWIVDSGQRRWSQRNGRYEIVWESKLFGKTF
Ga0208991_112696323300027681Forest SoilMRRKDWPTDPAEIRRSIEEAIQDFVRKGLVVDSGQRRWSERTGRYEIVWARPGAGETAH
Ga0209180_1003757833300027846Vadose Zone SoilMARKDWPKDPAEIQRSIEEAIQHFVKKGWLVDSGQRRWSQRTGRYEIVWESTVFGKTLQ
Ga0209180_1006611933300027846Vadose Zone SoilIQGREIVMARKDRPTDPAQIQLAIEEAIQHFVRKGWIVDSGHKRWSQRTGRYEIVWESKVAGKTFR
Ga0209180_1015524523300027846Vadose Zone SoilMPRKDWPTDPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGRYEIVWEYTAAGKMFLNTEHKSN
Ga0209180_1016621833300027846Vadose Zone SoilMTRKDWPTDPAEIRRSIEEAIQELVRKGLVVDSSQRRWSQRTGRYEIVWESTVFGKTFH
Ga0209701_1000632673300027862Vadose Zone SoilMARKDRPTDPAEIQLAIEEAIQHFVRKGWIVDSGHKRWSQRTGRYEIVWESKVAGKTFR
Ga0209701_1010336423300027862Vadose Zone SoilMPRKDRPTDPAEIQRSIEEAIQDLVRKGLVVDSGQRRWSQRTGRYEIAWESKLFGKTFH
Ga0209488_1019158343300027903Vadose Zone SoilMPRKDWPADPAEIQRSIEEAIQELVRKGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH
Ga0209488_1074194223300027903Vadose Zone SoilMRRKDWPTDPTEIQRSIEEAIQEAVRKGWLVDSGQKRWSPRTGRYEIVWESTIFGNTFH
Ga0209526_1013190323300028047Forest SoilMPRKDWPTDPAEIQRSIEEAIQKLVRMGLVVDSGQRRWSQRTGRYEIVWESKLFGKTFH
Ga0137415_1061771923300028536Vadose Zone SoilMARKDWPADPAEILRSIEEAIQDLVRKGLLIDSGRKKWSQRTGRYEIVWESKLFGKTLH
Ga0307296_1013271523300028819SoilIGLNPISKADIWRNFDMARKDWPTDPAEIQRSIEEAIQELVRKGLLADSGQRRWSERSKRYEIVWKATDAGRKLHSANSA
Ga0170824_12291549223300031231Forest SoilMPRKDMPRKDRPADAEIQRLIEEAIQDLVRKGLVVDSGQRRWSQRTGRYEIVWESTVFGKTFH
Ga0307471_10215117713300032180Hardwood Forest SoilEIQRSIEAAIQELVRKGLVVDSGQRRWSERTGRYEIVWESKLFGETFH

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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