Metagenome Family F079358

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079358
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	46 residues
Representative Sequence	APVAGTRLLAPFRVSVVSMLANLVIEANRFEATAQPLGASTVADPKAQ
Number of Associated Samples	91
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.76 %
% of genes near scaffold ends (potentially truncated)	93.97 %
% of genes from short scaffolds (< 2000 bps)	95.69 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.724 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.690 % of family members)
Environment Ontology (ENVO)	Unclassified (37.069 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.448 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 40.79% β-sheet: 0.00% Coil/Unstructured: 59.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF04392	ABC_sub_bind	4.31
PF00581	Rhodanese	2.59
PF02321	OEP	2.59
PF03401	TctC	1.72
PF00005	ABC_tran	1.72
PF11306	DUF3108	1.72
PF14216	DUF4326	0.86
PF03734	YkuD	0.86
PF03968	LptD_N	0.86
PF09994	DUF2235	0.86
PF07883	Cupin_2	0.86
PF12697	Abhydrolase_6	0.86
PF13442	Cytochrome_CBB3	0.86
PF00171	Aldedh	0.86
PF01047	MarR	0.86
PF00216	Bac_DNA_binding	0.86
PF00536	SAM_1	0.86
PF02195	ParBc	0.86
PF11799	IMS_C	0.86
PF00211	Guanylate_cyc	0.86
PF06078	DUF937	0.86
PF05050	Methyltransf_21	0.86
PF12680	SnoaL_2	0.86
PF05235	CHAD	0.86
PF01734	Patatin	0.86
PF07369	DUF1488	0.86
PF13458	Peripla_BP_6	0.86
PF00773	RNB	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	5.17
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.31
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.72
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.86
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.86
COG4776	Exoribonuclease II	Transcription [K]	0.86
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.86
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.86
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.86
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.86
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.86
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.86
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.86
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.86
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.86
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.86
COG0557	Exoribonuclease R	Transcription [K]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.72 %
Unclassified	root	N/A	48.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.72 %
Unclassified	root	N/A	48.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.72 %
Unclassified	root	N/A	48.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.24 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.28 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.21 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.59 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.72 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.28 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.93 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	8.62 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.72 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.28 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.17 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.45 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	1.72 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.72 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.86 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.17 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.45 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	1.72 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	1.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.72 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.86 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.17 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.45 %
unclassified Polynucleobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → unclassified Polynucleobacter	1.72 %
Gemmata	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	1.72 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.86 %
Mesorhizobium loti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium loti	0.86 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.17 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.45 %
Polynucleobacter sp. VK13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → unclassified Polynucleobacter → Polynucleobacter sp. VK13	1.72 %
Gemmata palustris	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata palustris	1.72 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.86 %
Mesorhizobium loti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium loti	0.86 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0692143	Not Available	1491	Open in IMG/M
3300000559\|F14TC_100517091	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300000787\|JGI11643J11755_11643107	Not Available	755	Open in IMG/M
3300001431\|F14TB_100433063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1095	Open in IMG/M
3300005332\|Ga0066388_100285727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2293	Open in IMG/M
3300005332\|Ga0066388_106999912	Not Available	567	Open in IMG/M
3300005451\|Ga0066681_10275865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1025	Open in IMG/M
3300005455\|Ga0070663_101040104	Not Available	713	Open in IMG/M
3300005455\|Ga0070663_101379931	Not Available	623	Open in IMG/M
3300005467\|Ga0070706_100884023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	826	Open in IMG/M
3300005617\|Ga0068859_102384302	Not Available	583	Open in IMG/M
3300005713\|Ga0066905_100644339	Not Available	902	Open in IMG/M
3300005764\|Ga0066903_100538542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1996	Open in IMG/M
3300005764\|Ga0066903_102364006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1027	Open in IMG/M
3300005764\|Ga0066903_102728437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	958	Open in IMG/M
3300005764\|Ga0066903_106002048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	636	Open in IMG/M
3300005764\|Ga0066903_107532374	Not Available	561	Open in IMG/M
3300005764\|Ga0066903_108419905	Not Available	526	Open in IMG/M
3300005937\|Ga0081455_10573955	Not Available	741	Open in IMG/M
3300006046\|Ga0066652_100996704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	795	Open in IMG/M
3300006904\|Ga0075424_102073386	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300009167\|Ga0113563_12840586	Not Available	586	Open in IMG/M
3300009553\|Ga0105249_11428747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	764	Open in IMG/M
3300009792\|Ga0126374_10292409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1087	Open in IMG/M
3300010046\|Ga0126384_10794098	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300010322\|Ga0134084_10242379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648	Open in IMG/M
3300010362\|Ga0126377_10228894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1798	Open in IMG/M
3300010376\|Ga0126381_101975226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	841	Open in IMG/M
3300010376\|Ga0126381_103309462	Not Available	636	Open in IMG/M
3300010398\|Ga0126383_11127082	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300010398\|Ga0126383_11186076	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300010398\|Ga0126383_12968990	Not Available	554	Open in IMG/M
3300012208\|Ga0137376_10242232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1563	Open in IMG/M
3300012208\|Ga0137376_11683451	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300012212\|Ga0150985_123048277	Not Available	601	Open in IMG/M
3300012355\|Ga0137369_10224558	All Organisms → cellular organisms → Bacteria → Proteobacteria	1436	Open in IMG/M
3300012356\|Ga0137371_10859700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	690	Open in IMG/M
3300012358\|Ga0137368_10112301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2086	Open in IMG/M
3300012362\|Ga0137361_10501334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1115	Open in IMG/M
3300012469\|Ga0150984_100146965	Not Available	766	Open in IMG/M
3300012912\|Ga0157306_10294876	Not Available	592	Open in IMG/M
3300012948\|Ga0126375_10196678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1319	Open in IMG/M
3300013308\|Ga0157375_13180213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	548	Open in IMG/M
3300014325\|Ga0163163_11076505	Not Available	867	Open in IMG/M
3300015357\|Ga0134072_10147622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	771	Open in IMG/M
3300015371\|Ga0132258_10422296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3318	Open in IMG/M
3300015372\|Ga0132256_102326669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	639	Open in IMG/M
3300016270\|Ga0182036_10610098	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	876	Open in IMG/M
3300016357\|Ga0182032_10403167	Not Available	1106	Open in IMG/M
3300016357\|Ga0182032_11096366	Not Available	683	Open in IMG/M
3300016371\|Ga0182034_11807369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300016387\|Ga0182040_10470205	Not Available	1000	Open in IMG/M
3300016387\|Ga0182040_10904601	Not Available	732	Open in IMG/M
3300016387\|Ga0182040_11047289	Not Available	682	Open in IMG/M
3300016422\|Ga0182039_10461800	Not Available	1090	Open in IMG/M
3300018027\|Ga0184605_10477428	Not Available	546	Open in IMG/M
3300018028\|Ga0184608_10379130	Not Available	617	Open in IMG/M
3300018054\|Ga0184621_10262194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	614	Open in IMG/M
3300018468\|Ga0066662_12494308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300019356\|Ga0173481_10861746	Not Available	507	Open in IMG/M
3300019890\|Ga0193728_1256847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	695	Open in IMG/M
3300021363\|Ga0193699_10089751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1232	Open in IMG/M
3300021560\|Ga0126371_12385917	Not Available	640	Open in IMG/M
3300025905\|Ga0207685_10184276	Not Available	970	Open in IMG/M
3300025905\|Ga0207685_10805089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300025906\|Ga0207699_10711692	Not Available	735	Open in IMG/M
3300028047\|Ga0209526_10349464	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300028381\|Ga0268264_11934280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium loti	599	Open in IMG/M
3300028710\|Ga0307322_10074591	Not Available	851	Open in IMG/M
3300028714\|Ga0307309_10094448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	707	Open in IMG/M
3300028715\|Ga0307313_10249020	Not Available	552	Open in IMG/M
3300028755\|Ga0307316_10002985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → unclassified Polynucleobacter → Polynucleobacter sp. VK13	5289	Open in IMG/M
3300028768\|Ga0307280_10001312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → unclassified Polynucleobacter → Polynucleobacter sp. VK13	5991	Open in IMG/M
3300028768\|Ga0307280_10142289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	824	Open in IMG/M
3300028782\|Ga0307306_10070210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	900	Open in IMG/M
3300028787\|Ga0307323_10066471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1279	Open in IMG/M
3300028787\|Ga0307323_10292610	Not Available	585	Open in IMG/M
3300028828\|Ga0307312_11141608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300028884\|Ga0307308_10048702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1990	Open in IMG/M
3300028885\|Ga0307304_10292350	Not Available	718	Open in IMG/M
3300031543\|Ga0318516_10519874	Not Available	682	Open in IMG/M
3300031544\|Ga0318534_10840302	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata palustris	515	Open in IMG/M
3300031545\|Ga0318541_10517687	Not Available	667	Open in IMG/M
3300031640\|Ga0318555_10287454	Not Available	889	Open in IMG/M
3300031680\|Ga0318574_10285700	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata palustris	957	Open in IMG/M
3300031680\|Ga0318574_10905923	Not Available	516	Open in IMG/M
3300031719\|Ga0306917_10141119	All Organisms → cellular organisms → Bacteria → Proteobacteria	1778	Open in IMG/M
3300031719\|Ga0306917_10449249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1009	Open in IMG/M
3300031744\|Ga0306918_10644796	Not Available	829	Open in IMG/M
3300031770\|Ga0318521_10392841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	826	Open in IMG/M
3300031771\|Ga0318546_10125009	All Organisms → cellular organisms → Bacteria	1713	Open in IMG/M
3300031771\|Ga0318546_11351835	Not Available	500	Open in IMG/M
3300031779\|Ga0318566_10294163	Not Available	804	Open in IMG/M
3300031795\|Ga0318557_10222528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	863	Open in IMG/M
3300031835\|Ga0318517_10117714	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300031835\|Ga0318517_10302443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	723	Open in IMG/M
3300031860\|Ga0318495_10491176	Not Available	536	Open in IMG/M
3300031879\|Ga0306919_10369431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1097	Open in IMG/M
3300031879\|Ga0306919_11005170	Not Available	637	Open in IMG/M
3300031880\|Ga0318544_10188054	Not Available	796	Open in IMG/M
3300031890\|Ga0306925_11615864	Not Available	629	Open in IMG/M
3300031894\|Ga0318522_10301451	Not Available	607	Open in IMG/M
3300031897\|Ga0318520_10873974	Not Available	565	Open in IMG/M
3300031908\|Ga0310900_10509138	Not Available	937	Open in IMG/M
3300031910\|Ga0306923_11702463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300031942\|Ga0310916_11487674	Not Available	552	Open in IMG/M
3300031942\|Ga0310916_11567739	Not Available	535	Open in IMG/M
3300031947\|Ga0310909_10434817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1101	Open in IMG/M
3300031954\|Ga0306926_10415889	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300031954\|Ga0306926_11917520	Not Available	669	Open in IMG/M
3300032043\|Ga0318556_10657232	Not Available	546	Open in IMG/M
3300032059\|Ga0318533_11332566	Not Available	524	Open in IMG/M
3300032060\|Ga0318505_10447362	Not Available	611	Open in IMG/M
3300032261\|Ga0306920_101201446	Not Available	1095	Open in IMG/M
3300032261\|Ga0306920_101981930	Not Available	816	Open in IMG/M
3300033290\|Ga0318519_10132891	Not Available	1375	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.79%
Host-Associated	Host-Associated	11.21%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.34%
Plants	Host-Associated → Plants	11.21%
Aquatic	Environmental → Aquatic	3.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.31%
Sediment	Environmental → Aquatic → Sediment	2.59%
Freshwater	Environmental → Aquatic → Freshwater	0.86%
Roots	Host-Associated → Plants → Roots	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.55%
Loam	Environmental → Terrestrial → Soil → Loam	13.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.59%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.72%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.86%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_06921434	3300000033	Soil	SVVSMLANLVIEANRFESTAQQLGGSTVSDPKAQ*
F14TC_1005170911	3300000559	Soil	RLLAPFRVSVVSMLANLVIEANRFEATARPLGASTVPEPKAAQ*
JGI11643J11755_116431071	3300000787	Soil	LAPFRLSVVSMLANLVIEASRFEAIASPSDASTVADPKAQ*
F14TB_1004330633	3300001431	Soil	EIEIALAPVAGTRLLAPFRVSIVSMLANLVIDANRFEVTPQPASTVADPKAQ*
Ga0066388_1002857276	3300005332	Tropical Forest Soil	DMELALAPAGGTHLLVPFRVSVASRVANLVIEANRFETTGRSQAVADPKAQ*
Ga0066388_1069999121	3300005332	Tropical Forest Soil	LAPVAGTRLLAPFRVSVVMMLANLVIEANRFEATARPLGASMVSDPKAAQ*
Ga0066681_102758653	3300005451	Soil	LKNRVYAVNKPVADTRLLAPFRMSVVSMVANLVIEANRFEATWQPSGASTVADPKPQ*
Ga0070663_1010401043	3300005455	Corn Rhizosphere	ALAPVAGTRLLAPFRLSVVSMLANLVIEASRFEATARPLECFNGC*
Ga0070663_1013799312	3300005455	Corn Rhizosphere	SEGREMEMALAPIAGTRFLVPFRVSVVSMIANLVIVANRFEITAQAGASTLSDPKPE*
Ga0070706_1008840231	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	ADTRLLAPFRMSVVSMVANLVIEANRFEATSQPSGASTVADPKPE*
Ga0068859_1023843021	3300005617	Switchgrass Rhizosphere	FRLSVVSMLAKLVIEASRFEATARTLDASTVAHP*
Ga0066905_1006443393	3300005713	Tropical Forest Soil	APLVGMRLLAPFRVTVVIMLATLVIEANQFEATTRPLGASTVADPKAQ*
Ga0066903_1005385425	3300005764	Tropical Forest Soil	RMLVESALANLVIEANQFEVTAQPQDTSTVADPKAQ*
Ga0066903_1023640062	3300005764	Tropical Forest Soil	MEMALAPAAGTRLLAPFRMLVESALANLVIEANQFEVTAQPQDASTVADPKAQ*
Ga0066903_1027284371	3300005764	Tropical Forest Soil	PVAGTRLLAPFRVSVVMMLANLVIEANRFEATARPLGASTVSDPKAAQ*
Ga0066903_1060020483	3300005764	Tropical Forest Soil	APFRMLVESALANLVIEANQFEVTAQPQDTSTVADPKAQ*
Ga0066903_1075323743	3300005764	Tropical Forest Soil	PVAGTRLLAPFRVSVVMMLANLVIEANRFEATARPLGASMVSDPKAAQ*
Ga0066903_1084199052	3300005764	Tropical Forest Soil	EMEMALAPVAGTRLLAPFRMLVVSALANLVIEANQFEVTVQPQDASTVADPKAQ*
Ga0081455_105739552	3300005937	Tabebuia Heterophylla Rhizosphere	LSEGREMEMVLAPITGTSLLAPFRLSVVSMLANVMIEANRFETSAHPLDASPVAGAKTR*
Ga0066652_1009967041	3300006046	Soil	DTRLLAPFRMSVVSMVANLVIEANRFEATWQPSGAPTVADPKPQ*
Ga0075424_1020733862	3300006904	Populus Rhizosphere	PFRLSVVSMLANIVIEANRFETTSRPLDASTVADPKGQ*
Ga0113563_128405861	3300009167	Freshwater Wetlands	LVPFRMSVVSMLANLVIEANRFETTAPVLDSAVADPKL*
Ga0105249_114287471	3300009553	Switchgrass Rhizosphere	MEIALAPISGTRLLAPFRMSVTSILANVVIEANRFEATGQPADSSPP
Ga0126374_102924093	3300009792	Tropical Forest Soil	PFRMLVVSALVNLVIEADQFEVTAQPRDASTVADPKAQ*
Ga0126384_107940982	3300010046	Tropical Forest Soil	GREMEMALAPVAGTRLLAPFRMLVVSSLANLVIEANQFEVTVQPQDASTVADPKAQ*
Ga0134084_102423791	3300010322	Grasslands Soil	LLAPFRMSVVSMVANLVIEANRFEATSQPLGASTVADPKPQ*
Ga0126377_102288944	3300010362	Tropical Forest Soil	ALAPVAGTRLLAPFRMLVVSALANLVIEANQFEATAQPQDPSTVADPKAQ*
Ga0126381_1019752261	3300010376	Tropical Forest Soil	AGTRLLAPFRMLVVSSLANLVIEANQFEVTVQPQDASTVADPKAQ*
Ga0126381_1033094623	3300010376	Tropical Forest Soil	EMALAPVAGTRLLAPFRMLVESALANLVIEANQFEVIAQPQDTSTVADPKAQ*
Ga0126383_111270823	3300010398	Tropical Forest Soil	LAPVAGTRLLAPFRVSVVIMFANLVIEANRFEATARPLGASTVSDPKAAQ*
Ga0126383_111860761	3300010398	Tropical Forest Soil	LALAPVAGTRLLAPFRMLVVSALANLVIEANQFEVTAQASTVADPKAQ*
Ga0126383_129689901	3300010398	Tropical Forest Soil	RMLVESALANLVIEANQFEVTAQPRDTSKVADPQAQ*
Ga0137376_102422322	3300012208	Vadose Zone Soil	MEVALAPVAGTRLLAPFRVSVVSMLANLVIEANRFEATARPLGASTVPEPKAAQ*
Ga0137376_116834512	3300012208	Vadose Zone Soil	AGTRLLAPFRVSVASRLANLVIEADRFEATSQPRGASTVADPKAQ*
Ga0150985_1230482772	3300012212	Avena Fatua Rhizosphere	RLLAPFRLSVVSMLANLVIEASRFEATARPLDASTVADPKAQ*
Ga0137369_102245581	3300012355	Vadose Zone Soil	PVAGTRLLAPFRVSIVRMLAHWVLDANRFEATAQPASTVADPKAQ*
Ga0137371_108597003	3300012356	Vadose Zone Soil	MLVVSALANLVIEANQFEVTAQPQDASTVADPKAQ*
Ga0137368_101123015	3300012358	Vadose Zone Soil	LAPFRVSVISMLANLVIDANRFEATAQPASTVADPKAQ*
Ga0137361_105013341	3300012362	Vadose Zone Soil	MEVVLAPVAGTRVLAPFGLSIGGTLASLVIWASRFEATVQPPAAPTNADPKQR*
Ga0150984_1001469652	3300012469	Avena Fatua Rhizosphere	REMEMALAPVAGTRLLVPIRVSVVSILANLVIVANRFEVVAQPAGASTLADPKPQ*
Ga0157306_102948761	3300012912	Soil	MALAPIAGTRFLVPFRVSVVSMIANLVIVANRFEITAQAGASTLSDPKPE*
Ga0126375_101966783	3300012948	Tropical Forest Soil	LAPFRMLVVSALANLVIEANQFEVTAQPRDASTVADPKAQ*
Ga0157375_131802132	3300013308	Miscanthus Rhizosphere	PFRVSVVIMFANLVIEANRFEATARPLGASTVSDPKAAQ*
Ga0163163_110765051	3300014325	Switchgrass Rhizosphere	APVAGTRLLAPFRLSVVSMLANIVIEANRFETTSRPLDDSMVADPKGQ*
Ga0134072_101476221	3300015357	Grasslands Soil	VADTRLLAPFRMSVVSMVANLVIEANRFEATSQPSGASTVADPKPQ*
Ga0132258_104222961	3300015371	Arabidopsis Rhizosphere	APVAGTRLLAPFRLSVVSMLANLVIEASRFEATARPLDAYSIMEREK*
Ga0132256_1023266691	3300015372	Arabidopsis Rhizosphere	KYLSEGWDMELALAPAGGTHLLVPFRVSVASRVANLVIEANRFETTGRSQAVADPKAQ*
Ga0182036_106100982	3300016270	Soil	APVAGTRLLAPFRMLVVSSLANLVIEANQFEVTVQPQDASTVADPKAQ
Ga0182032_104031674	3300016357	Soil	GTRLLAPFRMLVESALANLVIEANQFEVTAQPQDTSTVADPKAQ
Ga0182032_110963663	3300016357	Soil	LLAPFRMLVVSALANLVIEANEFEVTARPPDASTAADPKAP
Ga0182034_118073691	3300016371	Soil	MEMALAPVAGTRLLAPFRMLVVSSLANLVIEANQFEVTVQPQDASTVADPKGQ
Ga0182040_104702051	3300016387	Soil	TRLLAPFRMLVESALANLVIEANQFEVTAQPQDASKVADPKAQ
Ga0182040_109046011	3300016387	Soil	VAGTRMLAPFRMLVVSALANLVIEANEFEVTARPPDASTAADPKAP
Ga0182040_110472891	3300016387	Soil	APVAGTRLLAPFRMLVESALANLVIEANQFEVTAQPQDASTIADPKAQ
Ga0182039_104618004	3300016422	Soil	MLVESALANLVIEANQFEVTAQPQDTSTVADPKAQ
Ga0184605_104774281	3300018027	Groundwater Sediment	VAGTRLLAPFRVSVVSLLANLVIQADRFEATAQPLGASTIADPKAQ
Ga0184608_103791301	3300018028	Groundwater Sediment	APVAGTRLLAPFRVSVVSMLANLVIEANRFEATAQPLGASTVADPKAQ
Ga0184621_102621941	3300018054	Groundwater Sediment	REMEMALAPVAGTRLLAPFRLSVASMLANLVIEANRFEATARLDAPVADPKAQ
Ga0066662_124943081	3300018468	Grasslands Soil	EIALAPVADTRLLAPFRMSVVSIVANLVIEANRFEATSQPSGASTVTDPKPQ
Ga0173481_108617461	3300019356	Soil	AGTRLLAPFRMSVVSGLANFVMEANRFEATAHPSDAQIVADPKAQ
Ga0193728_12568472	3300019890	Soil	ALAPVAGTRLLAPFRLSVASMLANLVIEANRFEATARLDAPVADPKAQ
Ga0193699_100897511	3300021363	Soil	LAPVAGTRLLAPFRLSVVSMLANLVIEASRFEATARPLDASTVADPKAQ
Ga0126371_123859171	3300021560	Tropical Forest Soil	RMLVVSSLANLVIEANQFEVTVQPQDASTVADPKAQ
Ga0207685_101842762	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	EVALAPVAGTRLLAPFRLSVVSMLANLVIEASRFEATARPLDASTVADPKAQ
Ga0207685_108050891	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	PVADTRLLAPFRMSVVSMVANLVIEANRFEATSQPSGASTVADPKPQ
Ga0207699_107116923	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	AGTRLLVPFRMSVVSMLANMMIEANRFETTAPALDSAAADPKAQ
Ga0209526_103494641	3300028047	Forest Soil	FRVSVVSMLANLVIEANRFEATASPGAAKVADPKAQ
Ga0268264_119342802	3300028381	Switchgrass Rhizosphere	ITIFVSMLANIVIEANRFETTSRPLDDSMVADPKGQ
Ga0307322_100745914	3300028710	Soil	SEGREIEMALAPVAGTRLLAPFRLSVVSMLANLVIDASRFEATARPLDASTVADPKAQ
Ga0307309_100944481	3300028714	Soil	LAPFRLSVVSMLANLVIEASRFEATARPLDASTVADPKAQ
Ga0307313_102490201	3300028715	Soil	LLAPFQLSVVSMLANLVIEASRFEATARPLDASTVADPKAQ
Ga0307316_100029851	3300028755	Soil	APITGTRLLAPFRLSVMSMLANLVIEASRFEATARPLDASTVADPKAQ
Ga0307280_100013121	3300028768	Soil	MAVPRLLAPFRLSVMSMLANLVIEASRFEATARPLDASTVADPKAQ
Ga0307280_101422892	3300028768	Soil	ALAPVAGTRLLAPFRLSVASMLANLVIEANRFEATARLDAPVTDPKAE
Ga0307306_100702102	3300028782	Soil	APVAGTRLLAPFRLSVASMLANLVIEANRFEATARLDAPVADPKAQ
Ga0307323_100664711	3300028787	Soil	MAVTRLLAPFRLSVMSMLANLVIEASRFEATARPLDASTVADPK
Ga0307323_102926101	3300028787	Soil	LAPITGTRLLAPFRLSVMSMLANLVIEASRFEATARPLDASTVADPKAQ
Ga0307312_111416082	3300028828	Soil	PITGTRLLAPFRMSVTSVLANVVIEANRFEATPQSLEASPVAEPKRP
Ga0307308_100487024	3300028884	Soil	SFRRPRMEIALAPVAGTRLLAPFRVSVVSLLANLVIQADRFEATAQPLGASTIADPKAQ
Ga0307304_102923501	3300028885	Soil	EMALAPVAGTRLLAPFRLSVVSMLANLVIDASRFEATARPLDASTVADPKAQ
Ga0318516_105198742	3300031543	Soil	FRMLVESALANLVIEANQFEVTAQPQDASKVADPKAQ
Ga0318534_108403021	3300031544	Soil	PATRLLAPFRMLVESVLANLVIEANQFEVTAQPQDTSTVADPKTQ
Ga0318541_105176871	3300031545	Soil	MSLDFRRLQRRLLAPFRMLVESVLANLVIEANQFEVTAQPQDTSTVADPKAQ
Ga0318555_102874541	3300031640	Soil	MSLDFRRLQRRLLAPFRMLVESVLANLVIEANQFEVTAQPQDTS
Ga0318574_102857003	3300031680	Soil	RMLVESVLANLVIEANQFEVTAQPQDTSTVADPKAQ
Ga0318574_109059232	3300031680	Soil	MRLLAPFRMLVVSALANLVIEANQFEVTAQASTVADPKAQ
Ga0306917_101411191	3300031719	Soil	ALAPVAGTRLLAPFRMLVESALANLVIEANQFEVTAQPQDASTIADPKAQ
Ga0306917_104492492	3300031719	Soil	MALAPVAGTRLLAPFRMLVESALANLVIEANQFEVTAQPQDAS
Ga0306918_106447961	3300031744	Soil	LAPFRMLVESALANLVIEANQFEVTAQPQDASTIADPKAQ
Ga0318521_103928412	3300031770	Soil	VAGTRLLAPFRMLVVSALANLVIEANQFEATAQPQDASTVIEPKAQ
Ga0318546_101250094	3300031771	Soil	IEMALAPVAGTRLLAPFRMLVESALANLVIEANQFEVTAQPQDTSTVADPKAQ
Ga0318546_113518351	3300031771	Soil	APFRMLVESALANLVIEANQFEVTAQPQDASRVADPKAQ
Ga0318566_102941632	3300031779	Soil	ALAPLAGTRLLAPFRMLVVSALANLVIEANQFEVTAQASTVADPKAQ
Ga0318557_102225282	3300031795	Soil	EIELALAPVAGTRLLAPFRMLVVSALVNLVIEANQFEVTAQPRDASTVADPKAQ
Ga0318517_101177141	3300031835	Soil	VRRHCLFGQPAVTRLLAPFRMLVESALANLVVEANQFEVTAQPQDTSTVADPKAQ
Ga0318517_103024432	3300031835	Soil	MLVVSALVNLVIEANQFEVTAQPRDASTVADPKAQ
Ga0318495_104911761	3300031860	Soil	EMALAPVAGTRLLTPFRMLVESALANLVIEANQFEVTAQPQDASKVADPKAQ
Ga0306919_103694311	3300031879	Soil	PVAGTRLLAPFRVSVVMMLANLVIEANRFEATGASTVSDPKAAQ
Ga0306919_110051701	3300031879	Soil	VRRHCLFGQPAVTRLLAPFRMLVESALANLVIEADQFEVTAQPQDTSTVADPKAQ
Ga0318544_101880542	3300031880	Soil	FRMLVVSALANLVIEANQFEATAQPQDPSTVADPKAQ
Ga0306925_116158642	3300031890	Soil	APFRMLVVSALANLVIEANQFEATAQPQDPSTVADPKAQ
Ga0318522_103014511	3300031894	Soil	VRRHCLFGQPAVTRLLAPFRMLVESALANLVIEANQFEVTAQPQDTSTVADPKAQ
Ga0318520_108739741	3300031897	Soil	GREMEMALAPVAGTRLLAPFRMLVVSSLANLVIEANQFEVTVQPQDASTVADPKAQ
Ga0310900_105091382	3300031908	Soil	IALAPVAGTRLLAPFRLSVVSMLANIVIEANRFETTSRPLDDSMVADPKGQ
Ga0306923_117024632	3300031910	Soil	EMEMALAAVAGTRLLAPFRMLVESALANLVIEANQFEVTAQPQDASTIADPKAQ
Ga0310916_114876741	3300031942	Soil	APFRMLVVSALANLVIEANEFEVTARPPDASTAADPKAP
Ga0310916_115677391	3300031942	Soil	VAGTRLLAPFRMLVVSALANLVIEANQFEATAQPQDPSTVADPKAQ
Ga0310909_104348174	3300031947	Soil	VTLAPVAGTRLLAPFRVSVVMMLANLVIEANRFEATGASTVSDPKAAQ
Ga0306926_104158893	3300031954	Soil	APFRMLVESALANLVIEANQFEVTAQPQDTSTVADPKAQ
Ga0306926_119175202	3300031954	Soil	MEVALAPVAGTRLLAPFRVSVVIMFANLVIEANRFEATARPLGASTVSDAKAAQ
Ga0318556_106572322	3300032043	Soil	MALAPVAGTRLLAPFRMLVVSALANLVIEANEFEVTARPPDASTAADPKAP
Ga0318533_113325661	3300032059	Soil	FRMLVVSALANLVIEANQFEVTVQPQDASTVADPKAQ
Ga0318505_104473622	3300032060	Soil	RLLAPFRMLVVSALANLVIEANQFEVTAQASTVADPKAQ
Ga0306920_1012014463	3300032261	Soil	DGACTGRRHALLTPFRMLVESALANLVIEANQFEVTAQPQDASKVADPKAQ
Ga0306920_1019819302	3300032261	Soil	CTRLLAPFRVSVVIMFANLVIEANRFEATARPLGASTVSDAKAAQ
Ga0318519_101328913	3300033290	Soil	FRMLVESALANLVIEANQFEVTAQPQDTSTVADPKAQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079358

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences